The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	976936	985668	4846304	protease,transposase	Dickeya_phage(14.29%)	7	NA	NA
WP_001201751.1|976936_978055_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|978051_979998_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|980127_980349_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|980672_980993_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|981023_983300_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|983491_983950_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_085983316.1|984412_985668_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
>prophage 2
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	1035761	1134567	4846304	portal,protease,lysis,tail,tRNA,terminase,holin	Salmonella_phage(43.64%)	99	NA	NA
WP_001154025.1|1035761_1036565_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1036557_1037880_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1037860_1038565_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572724.1|1038564_1043031_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925872.1|1043375_1045217_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1045476_1046025_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1046052_1046700_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1046761_1047952_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977713.1|1048136_1049228_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1049834_1051235_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1051435_1051897_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544849.1|1052213_1053428_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000191399.1|1055185_1056388_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262308.1|1056582_1057875_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.5	2.9e-252
WP_000065276.1|1057919_1058168_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1058208_1058448_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001539618.1|1058490_1059648_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_000017133.1|1059610_1062496_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
WP_001668146.1|1062622_1062922_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
WP_000917564.1|1062943_1063102_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_014344008.1|1063094_1063355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038966.1|1063404_1063815_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370145.1|1063934_1064174_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001574095.1|1064139_1064514_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000062941.1|1064598_1065582_+	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_000800013.1|1065584_1066334_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.2	1.1e-137
WP_000113629.1|1066344_1066692_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000065108.1|1066688_1067000_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_014343823.1|1067077_1067368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|1067659_1067893_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_000807548.1|1068004_1068226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929805.1|1068308_1068911_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
WP_001096552.1|1069119_1069731_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_001617856.1|1069727_1069874_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047631.1|1069863_1070661_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
WP_010989004.1|1070727_1071045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|1071218_1071344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1071479_1071929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001141973.1|1072289_1072976_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_001574216.1|1073251_1073581_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984586.1|1073564_1074017_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001541990.1|1074034_1074514_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
WP_000371784.1|1074721_1075255_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989241.1|1075211_1077350_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000196190.1|1077346_1077553_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_001009207.1|1077549_1079097_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_001107908.1|1081191_1081515_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_000774239.1|1081507_1081807_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453194.1|1081787_1082354_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000196702.1|1082350_1082752_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
WP_000132756.1|1082763_1083513_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000478859.1|1083558_1083957_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_010989009.1|1083953_1084283_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_010989010.1|1084362_1087350_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
WP_000978296.1|1087346_1087679_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_000725267.1|1087777_1088275_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1088391_1088925_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152415.1|1089014_1089710_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000606351.1|1089719_1090457_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_000246065.1|1090354_1091059_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_001541993.1|1093604_1094480_+	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	77.1	1.1e-48
WP_000178849.1|1094518_1094761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001144679.1|1094814_1097253_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
WP_000143167.1|1097252_1097834_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_001526469.1|1098309_1099278_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
WP_000334547.1|1099925_1100552_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_010989011.1|1100620_1100920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001525490.1|1100904_1101591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1101861_1102053_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1102479_1105092_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000291723.1|1105299_1106310_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1106475_1107018_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1107014_1108124_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086485.1|1108222_1110331_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1110343_1112251_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|1112265_1113519_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1113523_1115164_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1115160_1115724_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1115979_1116147_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1116246_1116765_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156453.1|1116833_1118594_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1118779_1119232_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1119303_1120356_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1120712_1121222_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1121438_1122044_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1122030_1124184_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1124202_1124649_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|1124772_1126827_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1126862_1127321_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1127415_1128078_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1128251_1128665_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1128709_1129027_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1129084_1130296_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1130510_1131059_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1131084_1131864_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000072884.1|1131912_1132194_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1132190_1132520_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1132606_1133266_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1133886_1134567_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 3
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	1273010	1329519	4846304	portal,transposase,head,lysis,capsid,integrase,tRNA,terminase,tail	Enterobacteria_phage(34.62%)	69	1283738:1283752	1298136:1298150
WP_000502119.1|1273010_1273469_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_001113672.1|1273559_1274849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000456516.1|1274888_1276010_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_001031687.1|1276090_1277554_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_001537766.1|1277553_1278225_-	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_000423763.1|1278351_1279722_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	8.5e-109
WP_001519653.1|1279725_1280367_-	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_000004541.1|1280453_1281560_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000476067.1|1281613_1282075_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000825957.1|1282086_1282416_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_001249412.1|1282412_1283078_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000444507.1|1283249_1284500_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.1e-19
1283738:1283752	attL	TGAATGGAAAGCTGA	NA	NA	NA	NA
WP_000741325.1|1284612_1285755_-|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	O21929	Phage_21	80.3	8.2e-174
WP_000089141.1|1285744_1285981_-	excisionase	NA	NA	NA	NA	NA
WP_000069465.1|1286030_1286582_-	hypothetical protein	NA	A0A192Y7X3	Salmonella_phage	34.5	2.8e-10
WP_000066251.1|1286578_1286911_-	hypothetical protein	NA	S4TNP2	Salmonella_phage	81.8	8.8e-20
WP_001033922.1|1286903_1287224_-	hypothetical protein	NA	A0A222YY67	Escherichia_phage	59.2	1.8e-33
WP_001126029.1|1287259_1288090_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	72.0	1.3e-104
WP_022664343.1|1288082_1290794_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	H6WRX1	Salmonella_phage	39.6	1.2e-125
WP_000551857.1|1290934_1291105_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	49.0	9.7e-07
WP_000373340.1|1291504_1291711_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	67.6	7.4e-17
WP_000368620.1|1291818_1292904_-	ParA family protein	NA	H2BD62	Pseudomonas_phage	38.0	1.5e-60
WP_000169863.1|1293055_1293523_-	helix-turn-helix domain-containing protein	NA	K7PHG0	Enterobacteria_phage	86.9	3.2e-68
WP_000145711.1|1293536_1293764_+	helix-turn-helix domain-containing protein	NA	K7PKS2	Enterobacteria_phage	95.9	1.5e-34
WP_072143007.1|1293729_1294104_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	97.6	2.8e-62
WP_000024048.1|1294195_1295101_+	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	96.3	4.4e-170
WP_000788827.1|1295097_1295790_+	Replication protein 14	NA	G8C7U6	Escherichia_phage	60.2	1.8e-78
WP_000065092.1|1295804_1296470_+	ead/Ea22-like family protein	NA	A0A1V0E5L5	Salmonella_phage	44.9	2.8e-25
WP_000852188.1|1296471_1296942_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.1e-68
WP_000208067.1|1296944_1297598_+	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	52.0	6.3e-62
WP_000002116.1|1297590_1297872_+	ASCH domain-containing protein	NA	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	95.7	3.2e-47
WP_001217669.1|1298433_1298667_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
1298136:1298150	attR	TGAATGGAAAGCTGA	NA	NA	NA	NA
WP_014343878.1|1298783_1299032_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_000929785.1|1299066_1299666_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	81.0	1.7e-93
WP_000784702.1|1299662_1299857_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	1.4e-12
WP_000926953.1|1299838_1300135_+	DUF1364 family protein	NA	K7P7Q1	Enterobacteria_phage	79.1	3.9e-35
WP_000639984.1|1300131_1300686_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	65.3	3.4e-64
WP_000211401.1|1300952_1301513_+	ORF6N domain-containing protein	NA	A0A2R2Z302	Escherichia_phage	71.1	1.1e-41
WP_000658040.1|1301755_1301944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000690097.1|1302097_1302316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001533418.1|1302327_1302795_-	DUF2441 domain-containing protein	NA	NA	NA	NA	NA
WP_001533331.1|1303044_1303347_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001208107.1|1303324_1303864_+	lysozyme	NA	S5MQK2	Escherichia_phage	74.1	5.7e-77
WP_086015771.1|1304181_1304637_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.8	8.0e-56
WP_000669689.1|1304863_1305265_-	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001102153.1|1305550_1306096_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623088.1|1306067_1307999_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.3e-259
WP_000201415.1|1307982_1308186_+	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_038407364.1|1308182_1309763_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	5.6e-189
WP_001189493.1|1309752_1311249_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.7	4.3e-98
WP_000011260.1|1311261_1311609_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_000522566.1|1311663_1312692_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_038407362.1|1312749_1313115_+	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000083294.1|1313125_1313509_+|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_001534814.1|1313536_1314115_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.7	1.7e-82
WP_038407360.1|1314163_1315294_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	99.2	1.9e-215
WP_000033885.1|1315402_1315804_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000971954.1|1315811_1316558_+	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|1316608_1317004_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|1317000_1317339_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000372072.1|1317310_1320406_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
WP_000447369.1|1320408_1320738_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_001152689.1|1320747_1321446_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000662739.1|1321452_1322190_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_000246126.1|1322087_1322735_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000514918.1|1322796_1326159_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.9	0.0e+00
WP_000178849.1|1326197_1326440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038407301.1|1326493_1328935_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	62.0	2.5e-87
WP_000143179.1|1328934_1329519_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	84.8	1.7e-87
>prophage 4
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	2033222	2112566	4846304	portal,protease,transposase,holin,head,plate,capsid,lysis,integrase,terminase,tail	Salmonella_phage(86.36%)	102	2039760:2039775	2114189:2114204
WP_000502119.1|2033222_2033681_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_000659236.1|2033861_2035067_-	lysine-N-methylase	NA	NA	NA	NA	NA
WP_000079805.1|2035145_2036633_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_000146802.1|2036889_2038293_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_000287764.1|2038307_2038715_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_000204899.1|2038714_2039083_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA	NA
WP_000795487.1|2039154_2040639_+	alpha-amylase	NA	NA	NA	NA	NA
2039760:2039775	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
WP_000754695.1|2040678_2041104_-	lipoprotein	NA	NA	NA	NA	NA
WP_001535233.1|2041289_2042495_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA	NA
WP_000790504.1|2042491_2042725_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_000639596.1|2042989_2043376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719036.1|2043495_2043810_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001276834.1|2044026_2045709_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_000067735.1|2045701_2046697_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_000064163.1|2046689_2047397_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000213257.1|2047396_2048767_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_000046981.1|2048788_2049232_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
WP_000631669.1|2049228_2050446_+	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000132169.1|2050550_2051018_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000502811.1|2051022_2052027_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_001282115.1|2052023_2052437_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_000978276.1|2052436_2052814_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001253410.1|2052813_2053551_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_000187355.1|2053560_2053830_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_000616953.1|2053838_2054633_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000103974.1|2054914_2055538_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_000867218.1|2055576_2055771_-	protein DsrB	NA	NA	NA	NA	NA
WP_000844798.1|2055899_2056127_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA	NA
WP_000948794.1|2056436_2057252_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
WP_001119821.1|2057230_2058943_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
WP_000232161.1|2059107_2059293_-	YodC family protein	NA	NA	NA	NA	NA
WP_085983315.1|2059369_2060287_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001212264.1|2060456_2061377_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000785978.1|2061365_2061836_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001157322.1|2061816_2063247_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377041.1|2063320_2064016_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|2064107_2064407_-	membrane protein	NA	NA	NA	NA	NA
WP_001080680.1|2065056_2066253_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_024131109.1|2066513_2066702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2066712_2066925_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457662.1|2067379_2068648_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000394196.1|2068650_2069070_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000500831.1|2069196_2069358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526483.1|2069988_2070210_-	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_000492926.1|2070422_2071430_+	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_015701331.1|2071714_2072314_-|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	5.9e-107
WP_000554737.1|2072283_2073846_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	100.0	2.6e-287
WP_001207832.1|2073832_2074420_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_014343855.1|2074422_2074944_-|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	100.0	2.9e-94
WP_014343856.1|2074978_2075524_-|plate	baseplate J/gp47 family protein	plate	Q8HAB7	Salmonella_phage	100.0	9.2e-99
WP_000605050.1|2075495_2075909_-	phage GP46 family protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_001273649.1|2075913_2076447_-|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
WP_001066636.1|2076446_2077505_-	hypothetical protein	NA	Q8HAC0	Salmonella_phage	100.0	1.3e-202
WP_000863818.1|2077501_2078842_-	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
WP_000785385.1|2078875_2080804_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.8	0.0e+00
WP_000588852.1|2080888_2081215_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000515952.1|2081211_2081568_-|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_001007991.1|2081567_2083064_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
WP_000497739.1|2083053_2083218_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_000779218.1|2083221_2083782_-	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
WP_001135697.1|2083778_2084291_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
WP_000702408.1|2084262_2084667_-|head	phage head closure protein	head	Q8HAC9	Salmonella_phage	100.0	1.4e-72
WP_000927378.1|2084663_2084987_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000601353.1|2084989_2085190_-	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
WP_000257528.1|2085240_2086446_-|capsid	phage major capsid protein	capsid	Q8HAD2	Salmonella_phage	100.0	1.6e-223
WP_001193639.1|2086460_2087111_-|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000466254.1|2087088_2088330_-|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
WP_000605609.1|2088329_2088512_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_000088182.1|2088523_2090257_-|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
WP_000929191.1|2090253_2090748_-|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
WP_001135225.1|2090873_2091224_-	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
WP_001292890.1|2091284_2091587_-	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
WP_000877027.1|2091806_2092226_-	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
WP_001050825.1|2092438_2092924_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
WP_001005901.1|2092920_2093535_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
WP_001527046.1|2093537_2093882_-|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
WP_014343859.1|2094043_2094478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527054.1|2094407_2094665_-	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
WP_000188927.1|2094797_2095421_-	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
WP_001202278.1|2095431_2096421_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	9.2e-190
WP_001061457.1|2096428_2097289_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
WP_001241579.1|2097305_2097695_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
WP_000066908.1|2097691_2098585_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001684745.1|2098584_2099067_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000061500.1|2099068_2099887_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_000620702.1|2099883_2100108_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_001087402.1|2100104_2101262_-	Rha family phage regulatory protein	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000509731.1|2101258_2101813_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|2101841_2102066_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_001020636.1|2102163_2102859_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_000997190.1|2103673_2104045_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_000080415.1|2104102_2104930_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
WP_000008351.1|2105066_2105606_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000764235.1|2105676_2105907_+	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000071070.1|2105903_2106419_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
WP_000065095.1|2106415_2107033_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
WP_000208068.1|2107029_2107863_+	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
WP_001061334.1|2107866_2108436_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_001527041.1|2108475_2108703_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_000532847.1|2108704_2109694_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_000598920.1|2109985_2110783_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001219015.1|2112092_2112566_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
2114189:2114204	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 5
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	2198560	2209066	4846304		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2198560_2199874_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565905.1|2199900_2200980_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000648784.1|2200984_2201758_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018226.1|2201754_2202747_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973708.1|2202752_2203304_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000857529.1|2203304_2204183_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_001023662.1|2204230_2205130_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697840.1|2205129_2206215_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_000981469.1|2206591_2207485_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111841.1|2207662_2209066_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 6
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	2277374	2286545	4846304	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195332.1|2277374_2279408_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|2279648_2280107_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197952.1|2280278_2280809_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2280865_2281333_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2281379_2282099_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2282095_2283781_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2284003_2284735_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2284794_2284902_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2284882_2285614_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2285597_2286545_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 7
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	2305951	2372344	4846304	holin,tail,lysis	Salmonella_phage(30.0%)	59	NA	NA
WP_000989296.1|2305951_2306647_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_000553526.1|2306800_2307685_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000920081.1|2307861_2308581_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_000605187.1|2308577_2308823_+	DUF2542 family protein	NA	NA	NA	NA	NA
WP_001136409.1|2309027_2310269_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000956095.1|2310262_2311498_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
WP_001275101.1|2311572_2312583_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_000535907.1|2312598_2314119_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.0e-09
WP_001036943.1|2314252_2315251_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_000628631.1|2315749_2316772_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
WP_001526153.1|2316921_2318064_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_001139611.1|2318078_2318747_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	4.1e-56
WP_000425488.1|2319076_2319934_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000876817.1|2319922_2320312_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000443208.1|2320316_2321684_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_000022915.1|2321900_2322788_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_000023807.1|2322820_2324143_+	MFS transporter	NA	NA	NA	NA	NA
WP_000488255.1|2324186_2326178_-	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
WP_000535000.1|2326522_2327992_-	lysine-specific permease	NA	NA	NA	NA	NA
WP_000548308.1|2328181_2329045_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000137961.1|2329165_2330215_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000873909.1|2330293_2331151_+	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	28.5	2.2e-22
WP_000854414.1|2331215_2332904_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000091249.1|2332920_2333859_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_000487287.1|2333858_2334989_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA	NA
WP_000551937.1|2335357_2336539_+	sugar efflux transporter SetB	NA	NA	NA	NA	NA
WP_001213882.1|2336603_2337269_-	membrane protein	NA	NA	NA	NA	NA
WP_001519564.1|2337270_2337393_-	membrane protein	NA	NA	NA	NA	NA
WP_010989043.1|2337780_2338035_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001136822.1|2338358_2338931_+	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
WP_000169350.1|2339143_2340130_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000178095.1|2340159_2340879_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000241015.1|2341292_2341865_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
WP_000957746.1|2342190_2343747_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
WP_000561748.1|2343853_2345659_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000501623.1|2345668_2346763_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_001137764.1|2346762_2347788_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000203622.1|2347789_2349379_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	8.5e-20
WP_001094639.1|2349382_2349727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213347.1|2350117_2351308_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	2.4e-19
WP_001234836.1|2351335_2352031_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000578121.1|2352182_2353943_+	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.9e-100
WP_000494192.1|2354067_2354352_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_000033440.1|2354460_2355081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050806.1|2355108_2356116_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_001135904.1|2356295_2356523_+	YejL family protein	NA	NA	NA	NA	NA
WP_000256150.1|2356554_2358315_+	cardiolipin transport protein PbgA	NA	NA	NA	NA	NA
WP_000806401.1|2358595_2359099_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2359126_2359417_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2359764_2361594_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2361647_2362091_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_001215679.1|2362468_2362996_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2362998_2364240_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2364832_2365162_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000894640.1|2365458_2366790_+	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_010989045.1|2366818_2367187_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_014344510.1|2367201_2368191_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	2.4e-190
WP_001113462.1|2371052_2371256_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2371552_2372344_-|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
>prophage 8
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	2711215	2818357	4846304	portal,protease,transposase,holin,head,capsid,lysis,integrase,tRNA,terminase,tail	Salmonella_phage(33.33%)	112	2735760:2735776	2826261:2826277
WP_000940032.1|2711215_2711947_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553467.1|2712065_2712869_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000174944.1|2713013_2713892_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
WP_000985204.1|2714073_2715117_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA	NA
WP_000017587.1|2715120_2715939_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
WP_000020685.1|2715949_2716963_+	sulfite reductase subunit C	NA	NA	NA	NA	NA
WP_000111027.1|2716963_2717950_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000805728.1|2717940_2718579_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_000982961.1|2718704_2719982_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_001173729.1|2719976_2721116_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_000919178.1|2721311_2722565_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
WP_000883146.1|2722889_2724080_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_001187150.1|2724261_2725806_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA	NA
WP_000100008.1|2726166_2727498_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001100652.1|2727580_2729725_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000856793.1|2729780_2731241_+	dipeptide permease DtpD	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
WP_000717694.1|2731289_2731628_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000625591.1|2731704_2733042_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_001054236.1|2733038_2733803_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001670672.1|2733804_2735235_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
2735760:2735776	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000970045.1|2735884_2739772_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
WP_001747289.1|2739793_2740027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734258.1|2740027_2741572_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001134566.1|2741622_2742174_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|2742198_2742834_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_000361663.1|2742837_2744199_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001048530.1|2744209_2745103_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000995703.1|2745218_2746067_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000684022.1|2746105_2747023_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001276370.1|2747044_2748241_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_001022463.1|2748356_2749283_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001196290.1|2749320_2749581_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_000986043.1|2749692_2750073_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000818972.1|2750072_2750804_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000399380.1|2750815_2751544_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102232.1|2751555_2752461_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|2752457_2753138_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002559.1|2753411_2754386_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|2754402_2756202_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_010989047.1|2756606_2758100_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_001542312.1|2758578_2758716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015589559.1|2759428_2759593_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001738443.1|2760300_2760513_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_010989049.1|2760619_2760847_+	PagK-like protein	NA	NA	NA	NA	NA
WP_000143154.1|2760943_2761522_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_000593433.1|2761511_2762336_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_001144691.1|2762332_2764705_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
WP_000178853.1|2764758_2765001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514917.1|2765039_2768402_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
WP_000246126.1|2768463_2769111_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000662739.1|2769008_2769746_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_001152689.1|2769752_2770451_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000447369.1|2770460_2770790_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_000372072.1|2770792_2773888_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
WP_010989052.1|2773859_2774198_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2774194_2774590_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2774640_2775387_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2775394_2775796_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000817263.1|2775904_2777035_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_000677089.1|2777083_2777662_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000083294.1|2777689_2778073_-|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000201486.1|2778083_2778443_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522566.1|2778500_2779529_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2779583_2779931_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189503.1|2779943_2781440_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
WP_000831821.1|2781429_2783010_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|2783006_2783210_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000623091.1|2783193_2785125_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
WP_001102153.1|2785096_2785642_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669690.1|2785928_2786330_+	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_001533543.1|2786565_2787018_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000984581.1|2787035_2787488_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
WP_001574216.1|2787471_2787801_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110783.1|2788076_2788763_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
WP_000657897.1|2788977_2789166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000211410.1|2789672_2790236_-	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_001097241.1|2790508_2791186_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
WP_000801757.1|2791182_2791323_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001096550.1|2791319_2791931_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_000929791.1|2792139_2792742_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_014343878.1|2792776_2793025_-	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001217669.1|2793141_2793375_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000877757.1|2793617_2794250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664368.1|2794357_2795056_-	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
WP_000801764.1|2795069_2795765_-	hypothetical protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
WP_000024044.1|2795761_2796646_-	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
WP_010835408.1|2796737_2797112_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_000643689.1|2797071_2797314_-	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
WP_000660736.1|2797413_2797809_+	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
WP_001111772.1|2797867_2798707_+	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
WP_000356948.1|2798699_2799086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000950426.1|2799085_2799748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917562.1|2800204_2800363_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
WP_001539619.1|2800384_2800735_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_000017125.1|2800861_2803789_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
WP_077248255.1|2803751_2804909_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
WP_001237031.1|2804951_2805191_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001670787.1|2805231_2805516_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_001007939.1|2805493_2806723_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
WP_000589087.1|2807220_2807700_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2807696_2808653_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_001168374.1|2808652_2809303_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2809334_2809910_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2809906_2810071_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_022657248.1|2810334_2811957_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2811941_2812679_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2812809_2814144_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001526875.1|2814161_2815061_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2815163_2815751_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2815812_2816196_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|2816514_2817204_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|2817319_2818357_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
2826261:2826277	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 9
NZ_CP015157	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome	4846304	4411774	4427920	4846304	tail,plate	Burkholderia_phage(50.0%)	21	NA	NA
WP_000359500.1|4411774_4412407_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4412399_4413515_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4413505_4413865_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4414028_4415576_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703632.1|4415575_4416505_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
WP_000593182.1|4416501_4416864_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_000679398.1|4417191_4417914_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4417923_4418967_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4418954_4419164_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271423.1|4419163_4420117_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262500.1|4420116_4422471_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
WP_001185654.1|4422567_4422696_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4422655_4422973_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4423024_4423549_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4423548_4424976_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4424965_4425163_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4425159_4425615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|4425774_4426089_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270440.1|4426101_4426707_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.4	1.2e-59
WP_001226442.1|4426709_4426997_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4427572_4427920_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
>prophage 1
NZ_CP015158	Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 plasmid unnamed, complete sequence	93829	40860	50156	93829	transposase	Escherichia_phage(28.57%)	11	NA	NA
WP_001541564.1|40860_41277_+	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
WP_001527010.1|41460_41796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001541562.1|41852_42419_+	DUF2913 family protein	NA	NA	NA	NA	NA
WP_000728917.1|42450_43392_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
WP_000427676.1|43806_45012_+	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000064274.1|45011_45986_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	5.1e-84
WP_000457541.1|46067_47342_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	3.0e-156
WP_000925627.1|47341_47764_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
WP_000490265.1|48274_48745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000369839.1|48737_49094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088645.1|49475_50156_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.6e-28
