assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001705545.1_ASM170554v1	NZ_CP016833	Xanthomonas fragariae isolate Fap29 chromosome, complete genome	1	561358-561458	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GCTGACTTGGTGCGGCGCAGGCGTGGCAAACTGTCCAG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|72aa|up_2|NZ_CP016833.1_558133_558349_+,NA|235aa|up_0|NZ_CP016833.1_560486_561191_-,NA	NA|347aa|up_9|NZ_CP016833.1_539652_540693_+	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family	NA|2052aa|up_8|NZ_CP016833.1_541266_547422_+	PRK09169, PRK09169, hypothetical protein; Validated	NA|261aa|up_7|NZ_CP016833.1_547655_548437_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|529aa|up_6|NZ_CP016833.1_549353_550940_-	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]	NA|775aa|up_5|NZ_CP016833.1_551829_554154_-	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|364aa|up_4|NZ_CP016833.1_554436_555528_-	pfam07759, DUF1615, Protein of unknown function (DUF1615)	NA|284aa|up_3|NZ_CP016833.1_555736_556588_-	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|72aa|up_2|NZ_CP016833.1_558133_558349_+	NA	NA|453aa|up_1|NZ_CP016833.1_558968_560327_+	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|235aa|up_0|NZ_CP016833.1_560486_561191_-	NA	NA|304aa|down_0|NZ_CP016833.1_561841_562753_+	cd12837, EcCorA-like_u1, uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily	NA|232aa|down_1|NZ_CP016833.1_563300_563996_-	COG2013, COG2013, Uncharacterized conserved protein [Function unknown]	NA|558aa|down_2|NZ_CP016833.1_564383_566057_-	PRK13272, treA, alpha,alpha-trehalase TreA	NA|357aa|down_3|NZ_CP016833.1_568289_569360_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|964aa|down_4|NZ_CP016833.1_569386_572278_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|902aa|down_5|NZ_CP016833.1_572635_575341_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|469aa|down_6|NZ_CP016833.1_576934_578341_-	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|496aa|down_7|NZ_CP016833.1_578549_580037_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|646aa|down_8|NZ_CP016833.1_580635_582573_+	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH	NA|223aa|down_9|NZ_CP016833.1_582722_583391_+	COG0400, COG0400, Predicted esterase [General function prediction only]
GCF_001705545.1_ASM170554v1	NZ_CP016833	Xanthomonas fragariae isolate Fap29 chromosome, complete genome	2	3547329-3548077	1	CRT	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	TNCTGCCNTANCCGGCGNTCAGNNNGCTG	29	2	2	3547358-3547376|3547886-3547904	NZ_CP016833.1_965788-965770|NZ_CP016833.1_504542-504560	NA	15	15	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|168aa|up_3|NZ_CP016833.1_3543276_3543780_-,NA|70aa|down_0|NZ_CP016833.1_3551635_3551845_+	NA|456aa|up_9|NZ_CP016833.1_3527552_3528920_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|269aa|up_8|NZ_CP016833.1_3537471_3538278_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_7|NZ_CP016833.1_3539270_3539717_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|164aa|up_6|NZ_CP016833.1_3539814_3540306_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_CP016833.1_3540764_3542132_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|307aa|up_4|NZ_CP016833.1_3542344_3543265_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|168aa|up_3|NZ_CP016833.1_3543276_3543780_-	NA	NA|126aa|up_2|NZ_CP016833.1_3543929_3544307_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|377aa|up_1|NZ_CP016833.1_3544730_3545861_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|91aa|up_0|NZ_CP016833.1_3545977_3546250_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|70aa|down_0|NZ_CP016833.1_3551635_3551845_+	NA	NA|528aa|down_1|NZ_CP016833.1_3552382_3553966_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|down_2|NZ_CP016833.1_3554086_3555382_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|739aa|down_3|NZ_CP016833.1_3555599_3557816_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|222aa|down_4|NZ_CP016833.1_3557933_3558599_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|down_5|NZ_CP016833.1_3561022_3562945_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|down_6|NZ_CP016833.1_3563192_3563537_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|down_7|NZ_CP016833.1_3563536_3563947_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|down_8|NZ_CP016833.1_3564000_3564891_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|down_9|NZ_CP016833.1_3564964_3565855_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
GCF_001705545.1_ASM170554v1	NZ_CP016833	Xanthomonas fragariae isolate Fap29 chromosome, complete genome	3	3549631-3550464	2	CRT	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	NGTGCTGCCNTAGCCGGC	18	3	6	3549649-3549678|3549649-3549678|3549697-3549726|3549697-3549726|3550033-3550062|3550033-3550062	NZ_CP016833.1_3549361-3549390|NZ_CP016833.1_3549505-3549534|NZ_CP016833.1_3549553-3549582|NZ_CP016833.1_3549409-3549438|NZ_CP016833.1_3548593-3548622|NZ_CP016833.1_3548737-3548766	NA	17	17	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|168aa|up_3|NZ_CP016833.1_3543276_3543780_-,NA|70aa|down_0|NZ_CP016833.1_3551635_3551845_+	NA|456aa|up_9|NZ_CP016833.1_3527552_3528920_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|269aa|up_8|NZ_CP016833.1_3537471_3538278_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_7|NZ_CP016833.1_3539270_3539717_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|164aa|up_6|NZ_CP016833.1_3539814_3540306_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_CP016833.1_3540764_3542132_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|307aa|up_4|NZ_CP016833.1_3542344_3543265_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|168aa|up_3|NZ_CP016833.1_3543276_3543780_-	NA	NA|126aa|up_2|NZ_CP016833.1_3543929_3544307_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|377aa|up_1|NZ_CP016833.1_3544730_3545861_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|91aa|up_0|NZ_CP016833.1_3545977_3546250_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|70aa|down_0|NZ_CP016833.1_3551635_3551845_+	NA	NA|528aa|down_1|NZ_CP016833.1_3552382_3553966_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|432aa|down_2|NZ_CP016833.1_3554086_3555382_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|739aa|down_3|NZ_CP016833.1_3555599_3557816_+	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|222aa|down_4|NZ_CP016833.1_3557933_3558599_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|641aa|down_5|NZ_CP016833.1_3561022_3562945_+	PRK06814, PRK06814, acyl-[ACP]--phospholipid O-acyltransferase	NA|115aa|down_6|NZ_CP016833.1_3563192_3563537_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|137aa|down_7|NZ_CP016833.1_3563536_3563947_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|297aa|down_8|NZ_CP016833.1_3564000_3564891_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|297aa|down_9|NZ_CP016833.1_3564964_3565855_-	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
GCF_001705545.1_ASM170554v1	NZ_CP016833	Xanthomonas fragariae isolate Fap29 chromosome, complete genome	4	3634921-3637049	1,2,3,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGCGTAGGCAGCTCAGAAA,GTTCACTGCCGCGTAGGCAGCTCAGAAA,NNNNNNNNNGTTCACTGCCGCGTAGGCAGCTCAGAAA,GTTCACTGCCGCGTAGGCAGCTCAGAAA	28,28,37,28	2	2	3636090-3636121|3636930-3636961	NZ_CP016833.1_2119574-2119543|NZ_CP016833.1_2120357-2120326	I-F:I-F:I-F:I-F	28,35,35,28	35	TypeI-F	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|81aa|down_0|NZ_CP016833.1_3638320_3638563_-	NA|207aa|up_9|NZ_CP016833.1_3620383_3621004_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|388aa|up_8|NZ_CP016833.1_3621132_3622296_+	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|537aa|up_7|NZ_CP016833.1_3622306_3623917_+	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|675aa|up_6|NZ_CP016833.1_3624160_3626185_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	cas1|330aa|up_5|NZ_CP016833.1_3626365_3627355_+	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1	cas3-cas2|1122aa|up_4|NZ_CP016833.1_3627351_3630717_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|452aa|up_3|NZ_CP016833.1_3630795_3632151_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|337aa|up_2|NZ_CP016833.1_3632147_3633158_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|346aa|up_1|NZ_CP016833.1_3633180_3634218_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_0|NZ_CP016833.1_3634222_3634789_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|81aa|down_0|NZ_CP016833.1_3638320_3638563_-	NA	NA|1042aa|down_1|NZ_CP016833.1_3638620_3641746_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|356aa|down_2|NZ_CP016833.1_3641742_3642810_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|659aa|down_3|NZ_CP016833.1_3643072_3645049_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|302aa|down_4|NZ_CP016833.1_3645048_3645954_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|616aa|down_5|NZ_CP016833.1_3646135_3647983_+	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|569aa|down_6|NZ_CP016833.1_3648106_3649813_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|243aa|down_7|NZ_CP016833.1_3649809_3650538_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|484aa|down_8|NZ_CP016833.1_3650538_3651990_-	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown]	NA|676aa|down_9|NZ_CP016833.1_3651989_3654017_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCF_001705545.1_ASM170554v1	NZ_CP016833	Xanthomonas fragariae isolate Fap29 chromosome, complete genome	5	3888250-3888457	3,3,4	PILER-CR,CRISPRCasFinder,CRT	no		cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GTTCACTGCCGCGTAGGCAGCTCAGAAATAAC,GTTCACTGCCGCGTAGGCAGCTCAGAAA,GTTCACTGCCGCGTAGGCAGCTCAGAAAT	32,28,29	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	cas3,WYL,DEDDh,DinG,csa3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|158aa|up_7|NZ_CP016833.1_3874805_3875279_+,NA|729aa|down_0|NZ_CP016833.1_3889351_3891538_+	NA|206aa|up_9|NZ_CP016833.1_3873085_3873703_-	cd06259, YdcF-like, YdcF-like	NA|320aa|up_8|NZ_CP016833.1_3873687_3874647_-	PLN02970, PLN02970, serine racemase	NA|158aa|up_7|NZ_CP016833.1_3874805_3875279_+	NA	NA|635aa|up_6|NZ_CP016833.1_3875859_3877764_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|287aa|up_5|NZ_CP016833.1_3879279_3880140_-	cd05145, RIO1_like, Catalytic domain of the atypical protein serine kinases, RIO1 and RIO3 kinases and similar proteins	NA|276aa|up_4|NZ_CP016833.1_3881117_3881945_+	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|504aa|up_3|NZ_CP016833.1_3882172_3883684_+	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|274aa|up_2|NZ_CP016833.1_3883862_3884684_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|500aa|up_1|NZ_CP016833.1_3884825_3886325_+	PRK00047, glpK, glycerol kinase GlpK	NA|49aa|up_0|NZ_CP016833.1_3886870_3887017_-	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	NA|729aa|down_0|NZ_CP016833.1_3889351_3891538_+	NA	NA|693aa|down_1|NZ_CP016833.1_3891652_3893731_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|210aa|down_2|NZ_CP016833.1_3894394_3895024_-	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168	NA|144aa|down_3|NZ_CP016833.1_3895026_3895458_-	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|181aa|down_4|NZ_CP016833.1_3895551_3896094_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|154aa|down_5|NZ_CP016833.1_3896636_3897098_+	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|558aa|down_6|NZ_CP016833.1_3898810_3900484_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|215aa|down_7|NZ_CP016833.1_3900480_3901125_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|down_8|NZ_CP016833.1_3901789_3901948_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|down_9|NZ_CP016833.1_3902013_3903024_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs
