The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	564515	580090	1899956	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_065972704.1|564515_565148_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	65.2	7.3e-23
WP_065972706.1|565387_565942_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.7	2.8e-26
WP_065972708.1|566245_567040_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_002947774.1|567032_567875_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_002947776.1|567850_568681_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	4.5e-20
WP_065972709.1|568693_569236_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_065972711.1|569248_570106_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_065972713.1|570164_571442_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.3	9.6e-22
WP_065972715.1|571443_572694_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.9	3.0e-92
WP_065972716.1|572771_573149_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
WP_002947786.1|573151_574252_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_002952289.1|574420_575902_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	2.6e-95
WP_002952292.1|576078_577101_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_065972717.1|577528_578401_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.2	3.1e-32
WP_002952294.1|578467_580090_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	4.2e-46
>prophage 2
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	1180457	1193509	1899956		Streptococcus_phage(77.78%)	11	NA	NA
WP_004197422.1|1180457_1181459_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
WP_002950249.1|1182600_1183716_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.6	8.9e-157
WP_002950250.1|1183762_1184218_-	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.7	1.3e-77
WP_011225708.1|1184426_1185731_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	3.2e-246
WP_065973014.1|1185882_1186068_-	hypothetical protein	NA	W6LMT3	Streptococcus_phage	95.1	1.9e-24
WP_065973015.1|1186229_1188416_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.1	0.0e+00
WP_002950251.1|1188577_1189741_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.5	5.9e-220
WP_065973016.1|1189737_1190415_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	99.6	1.3e-121
WP_065973017.1|1190404_1191262_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_023909523.1|1191274_1192342_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_065973018.1|1192342_1193509_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	2.1e-39
>prophage 3
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	1208055	1301484	1899956	transposase,protease,bacteriocin,tRNA	Bacillus_phage(23.08%)	84	NA	NA
WP_065973030.1|1208055_1208640_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002936460.1|1208716_1209205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014621278.1|1209204_1211022_+	TraM recognition domain-containing protein	NA	NA	NA	NA	NA
WP_001072171.1|1211039_1211282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014621279.1|1211300_1212155_+	conjugal transfer protein TrbL	NA	NA	NA	NA	NA
WP_001097579.1|1212216_1212570_+	PrgI family protein	NA	NA	NA	NA	NA
WP_155758759.1|1212547_1214878_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_065973032.1|1214879_1217681_+	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	28.7	7.8e-08
WP_065973033.1|1218604_1218733_+	YydF family exported signaling peptide	NA	NA	NA	NA	NA
WP_065972448.1|1219018_1219972_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.2	3.9e-36
WP_065973034.1|1220072_1220693_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_065973035.1|1220694_1221420_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_065973036.1|1221551_1222190_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_065973037.1|1222229_1223306_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_012775533.1|1223359_1223587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024408868.1|1223583_1223973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012775535.1|1223962_1224319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973038.1|1224582_1224945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039671039.1|1224947_1225313_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_065973039.1|1225299_1227183_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_081831477.1|1227703_1228051_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_065973040.1|1228052_1228793_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_039671036.1|1228803_1230144_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_096811960.1|1230191_1230347_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_065973041.1|1230445_1231807_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_065973042.1|1231818_1233972_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.4	7.5e-43
WP_039671033.1|1234268_1234523_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_039671032.1|1234537_1234741_+|bacteriocin	bacteriocin BlpN	bacteriocin	NA	NA	NA	NA
WP_065973044.1|1237535_1237742_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_039671028.1|1237782_1237971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039671027.1|1238680_1238938_+|bacteriocin	ThmA bacteriocin	bacteriocin	NA	NA	NA	NA
WP_039671026.1|1238954_1239149_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_065973046.1|1241524_1242556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973047.1|1242559_1243255_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_155758745.1|1243284_1243437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973048.1|1243622_1244018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973049.1|1244524_1246318_+	recombinase family protein	NA	A0A2I4R675	Erysipelothrix_phage	52.5	2.8e-152
WP_065973050.1|1246522_1247353_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_065973052.1|1248246_1248861_+	DUF2140 domain-containing protein	NA	NA	NA	NA	NA
WP_065973053.1|1252583_1253495_+	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_002946754.1|1253496_1253820_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_065973054.1|1253816_1254869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973055.1|1255931_1256747_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_065973056.1|1256746_1257649_-	permease	NA	NA	NA	NA	NA
WP_065973057.1|1258012_1260145_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_065973058.1|1260131_1260572_+	SprT family protein	NA	NA	NA	NA	NA
WP_065973059.1|1260637_1260901_+	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_065973060.1|1261028_1261958_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_065973061.1|1261957_1262749_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_022096784.1|1262871_1263270_+	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_065973062.1|1263282_1263723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002945999.1|1263743_1264040_-	DUF3270 domain-containing protein	NA	NA	NA	NA	NA
WP_065973063.1|1264271_1265201_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_002945995.1|1265297_1266584_+	U32 family peptidase	NA	Q6DW11	Phage_TP	32.2	7.9e-40
WP_065972432.1|1266937_1268194_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	56.4	1.1e-126
WP_065973064.1|1268373_1268913_-	biotin transporter BioY	NA	NA	NA	NA	NA
WP_065973065.1|1269007_1269292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002886106.1|1269417_1269630_+	hypothetical protein	NA	A0A223LEC3	Bacillus_phage	48.5	1.3e-11
WP_065973066.1|1269665_1271000_-	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_065973067.1|1271208_1271517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064355509.1|1271619_1272009_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_065973068.1|1272031_1274917_-	DEAD/DEAH box helicase	NA	Q9T1H9	Lactobacillus_phage	29.3	5.1e-31
WP_065973069.1|1275554_1277045_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	39.3	1.1e-90
WP_065973070.1|1277272_1278583_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002952755.1|1278596_1279076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011225749.1|1279398_1280301_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_065973071.1|1280725_1281364_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_002950328.1|1281366_1281840_-|tRNA	aminoacyl-tRNA deacylase	tRNA	NA	NA	NA	NA
WP_065973072.1|1281954_1282902_-	N-acetylmuramoyl-L-alanine amidase	NA	A9QTG1	Bacillus_phage	36.6	8.4e-23
WP_065973073.1|1283094_1283484_-	sodium transporter	NA	NA	NA	NA	NA
WP_065973074.1|1283739_1284366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082302322.1|1284818_1285001_+	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_082308136.1|1285003_1285207_+	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_065973075.1|1285173_1285377_+	DUF2974 domain-containing protein	NA	NA	NA	NA	NA
WP_065973076.1|1286687_1289678_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.4	1.3e-21
WP_082308169.1|1289765_1290551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973077.1|1290563_1293245_+	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_065973395.1|1293237_1294485_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_065973078.1|1294503_1295700_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_065973079.1|1295876_1296629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973080.1|1296671_1298276_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	47.1	6.4e-116
WP_065973081.1|1298871_1299873_+	deoxyribonuclease	NA	NA	NA	NA	NA
WP_011225762.1|1300022_1300583_+	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	30.8	2.2e-10
WP_065973082.1|1300584_1301484_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
>prophage 4
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	1338196	1347117	1899956		Bacillus_phage(50.0%)	8	NA	NA
WP_022096813.1|1338196_1338799_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
WP_065973100.1|1338893_1340144_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	1.5e-96
WP_065973101.1|1340150_1341128_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_041827001.1|1341129_1341741_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.6	3.5e-22
WP_065973102.1|1341773_1343513_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	9.0e-47
WP_065973103.1|1343502_1345251_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	7.1e-52
WP_002885174.1|1345426_1345558_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_065973104.1|1345566_1347117_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.1	1.3e-41
>prophage 5
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	1367307	1375384	1899956		Geobacillus_virus(42.86%)	10	NA	NA
WP_065973397.1|1367307_1368018_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	33.0	3.5e-05
WP_002947597.1|1368106_1368343_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_002947590.1|1368411_1369332_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	3.8e-36
WP_002950490.1|1369656_1370247_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002947585.1|1370262_1370445_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	57.6	7.4e-13
WP_082308142.1|1370460_1370697_+	hypothetical protein	NA	A0A0H3UZD4	Geobacillus_virus	74.3	2.7e-23
WP_065973111.1|1370677_1371478_+	hypothetical protein	NA	A0A0H3UZD4	Geobacillus_virus	43.8	2.0e-49
WP_065973112.1|1372200_1372599_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_065973113.1|1372661_1373732_+	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.3	4.7e-54
WP_065973114.1|1373845_1375384_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.5e-16
>prophage 6
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	1387393	1393636	1899956		Pneumococcus_phage(33.33%)	8	NA	NA
WP_065973121.1|1387393_1388047_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.4	3.7e-62
WP_065973122.1|1388046_1388490_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	54.8	5.1e-39
WP_065973123.1|1388482_1389199_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	8.2e-63
WP_002946191.1|1389318_1389810_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_014608216.1|1390630_1390819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023909583.1|1391023_1391794_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225838.1|1391774_1392665_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_014621467.1|1392661_1393636_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.8	4.0e-137
>prophage 7
NZ_CP016877	Streptococcus thermophilus strain KLDS 3.1003 chromosome, complete genome	1899956	1482260	1489945	1899956	integrase	Streptococcus_phage(66.67%)	9	1484272:1484289	1501698:1501715
WP_011681101.1|1482260_1483919_-	fibronectin/fibrinogen-binding protein	NA	M1I0S4	Acanthocystis_turfacea_Chlorella_virus	40.8	1.6e-08
1484272:1484289	attL	TTTGCTTACCTTTTTGCT	NA	NA	NA	NA
WP_065973161.1|1484294_1485461_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.1	1.2e-151
WP_065973162.1|1485524_1486091_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	50.0	2.4e-09
WP_065973163.1|1486238_1486436_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_065973164.1|1486956_1487166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973165.1|1487179_1487389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973166.1|1487390_1487663_+	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	51.7	4.7e-19
WP_065973167.1|1487678_1488536_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	62.9	4.1e-101
WP_065973169.1|1488871_1489945_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	31.5	1.4e-42
1501698:1501715	attR	TTTGCTTACCTTTTTGCT	NA	NA	NA	NA
