The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	15805	24295	2389470		Staphylococcus_phage(28.57%)	8	NA	NA
WP_014123411.1|15805_17098_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	35.5	5.2e-68
WP_014123412.1|17216_18086_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	30.9	2.5e-13
WP_069028470.1|18141_19764_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.2	1.1e-46
WP_069028471.1|19925_20123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028472.1|20304_21552_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	54.6	8.0e-114
WP_061840900.1|21548_22355_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.3	2.1e-38
WP_050989791.1|22699_23548_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	45.9	2.1e-57
WP_014123418.1|23794_24295_+	hypothetical protein	NA	J9PV85	Bacillus_phage	53.5	5.0e-43
>prophage 2
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	135904	195083	2389470	transposase	Streptococcus_phage(45.45%)	51	NA	NA
WP_069028523.1|135904_137227_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	6.7e-95
WP_041591736.1|140087_141839_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_061841400.1|142156_143509_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_014123520.1|143524_144493_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_014123521.1|144513_145542_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_014123522.1|145557_146760_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_069028524.1|146761_148120_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002354485.1|148501_149188_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_069028526.1|150522_152145_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_069028527.1|152179_153145_+	malate permease	NA	NA	NA	NA	NA
WP_069028528.1|153131_153485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028529.1|153496_153919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028530.1|154034_154805_-	replication initiation protein	NA	NA	NA	NA	NA
WP_069028531.1|154994_155675_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	1.6e-108
WP_014123534.1|155866_156433_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069028532.1|156481_159139_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_002319817.1|159230_159911_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_069028533.1|160126_160690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028534.1|161059_162265_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_069028535.1|162245_164906_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_069028536.1|164957_165905_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_069028537.1|165979_166975_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_069028538.1|167103_167496_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_083207530.1|167497_167983_-	HIT family protein	NA	D7NW73	Streptomyces_phage	35.4	3.0e-08
WP_069028540.1|168099_168918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069028541.1|169725_170721_+	serine hydrolase	NA	NA	NA	NA	NA
WP_069028542.1|170753_171707_+	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA	NA
WP_061840657.1|171803_174074_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
WP_061840658.1|174192_174657_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_061840659.1|174751_175435_-	adenosylcobyric acid synthase	NA	NA	NA	NA	NA
WP_069028543.1|175427_176780_-	Mur ligase family protein	NA	NA	NA	NA	NA
WP_014123552.1|177034_178441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014123554.1|178661_179237_+	signal peptidase I	NA	NA	NA	NA	NA
WP_041591737.1|179411_181166_+	DNA helicase RecQ	NA	A0A2K9L021	Tupanvirus	37.4	4.5e-78
WP_014123556.1|181356_181773_+	Hsp20 family protein	NA	NA	NA	NA	NA
WP_014123557.1|182066_182474_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014123558.1|182476_182872_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014123559.1|183021_183594_+	thymidine kinase	NA	A0A1W6JKV9	Lactococcus_phage	51.6	5.6e-46
WP_014123560.1|183607_184684_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_014123561.1|184676_185519_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_082786912.1|185720_186755_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	41.6	8.8e-58
WP_014123563.1|186815_188057_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	55.8	8.5e-108
WP_069028544.1|188145_188775_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_069028545.1|188809_189052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028546.1|189452_190631_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_014123567.1|190651_191026_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	50.0	1.2e-25
WP_014123568.1|191007_191346_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_014123569.1|191404_192031_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_069028547.1|192496_193123_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.1	9.1e-34
WP_103097099.1|193694_193880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069028548.1|193976_195083_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	455511	529769	2389470	holin,transposase,tRNA	Streptococcus_phage(60.0%)	58	NA	NA
WP_069028678.1|455511_456834_-|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	42.5	1.7e-93
WP_069028679.1|457517_458489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069028680.1|458787_460737_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_069028681.1|460786_461260_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_069028682.1|461262_461568_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_069028683.1|461584_462595_+	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_069028684.1|462613_463795_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_069028685.1|464058_464160_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_069028686.1|464546_464813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028687.1|465656_467312_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_083207547.1|467308_468064_+	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_069028689.1|468109_468877_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069028690.1|469202_469304_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_041591760.1|469812_470049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014123850.1|470041_470377_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	43.5	3.5e-16
WP_069028691.1|470650_471202_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_081497480.1|471266_471503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069029370.1|471902_472766_-	glycine betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014123854.1|472815_473376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061840057.1|473618_475088_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_069028692.1|475144_476353_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_069028693.1|476906_477446_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_061840054.1|477462_478329_-	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_069028694.1|478309_479806_-	phytoene desaturase	NA	NA	NA	NA	NA
WP_028791011.1|480214_480940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014123862.1|480967_482131_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.4	1.3e-28
WP_069028695.1|482583_483810_+	MFS transporter	NA	NA	NA	NA	NA
WP_014123864.1|484124_484373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028696.1|484842_485394_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_069028697.1|485526_486417_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_038022287.1|486447_486843_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_061840050.1|486866_487772_-	ribokinase	NA	NA	NA	NA	NA
WP_069028698.1|488123_489167_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_069028699.1|489635_491048_+	MFS transporter	NA	NA	NA	NA	NA
WP_014123873.1|493234_493837_+	VanZ family protein	NA	NA	NA	NA	NA
WP_069028700.1|496653_499098_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
WP_069028701.1|499428_500151_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
WP_069028702.1|500155_502069_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
WP_069028703.1|502055_502901_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
WP_069028704.1|502903_503569_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
WP_069028705.1|503578_504607_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_069028706.1|504745_505996_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	53.9	6.6e-100
WP_068710726.1|506469_506763_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_014123593.1|508535_509894_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_061840043.1|510541_511255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014123885.1|511257_513789_-	DEAD/DEAH box helicase	NA	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	25.3	1.1e-40
WP_069028707.1|513979_514954_+|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_069028708.1|515374_516946_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069028709.1|517080_518349_+	cytosine permease	NA	NA	NA	NA	NA
WP_069028710.1|518383_519478_+	DUF917 domain-containing protein	NA	NA	NA	NA	NA
WP_069028711.1|519477_521043_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_069028712.1|521265_522498_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_014123892.1|522576_524277_+	transketolase	NA	NA	NA	NA	NA
WP_014123893.1|524327_524474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069028713.1|524576_526796_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_081497481.1|527039_527921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014123896.1|527923_528283_-	Nramp family transporter	NA	NA	NA	NA	NA
WP_069028714.1|528662_529769_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	1285792	1353264	2389470	transposase,protease	Staphylococcus_phage(17.65%)	60	NA	NA
WP_014124941.1|1285792_1287199_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.6	5.9e-41
WP_014124942.1|1287203_1287749_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_050989771.1|1287780_1288719_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.1	4.7e-34
WP_014124944.1|1288879_1290958_-	type I DNA topoisomerase	NA	A0A2K9L1Q2	Tupanvirus	38.5	8.9e-102
WP_069028972.1|1291091_1291970_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_061840533.1|1292030_1292798_-	ribonuclease HII	NA	R4THQ2	Phaeocystis_globosa_virus	37.6	3.2e-20
WP_014124947.1|1292798_1293647_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_002335628.1|1295367_1295598_-	hypothetical protein	NA	A0A1X9IGE0	Lactococcus_phage	43.2	1.2e-10
WP_002335627.1|1295987_1296230_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002335626.1|1296216_1296645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014124953.1|1299288_1300326_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_014124954.1|1300351_1301290_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_069028973.1|1301481_1302588_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_061840530.1|1303179_1303725_-	signal peptidase I	NA	NA	NA	NA	NA
WP_069028974.1|1303750_1305163_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	27.4	1.8e-21
WP_014124957.1|1305190_1305412_-	YozE family protein	NA	NA	NA	NA	NA
WP_014124958.1|1305408_1305924_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_014124959.1|1305934_1306579_-	YpmS family protein	NA	NA	NA	NA	NA
WP_069028975.1|1306575_1307466_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_061840526.1|1307695_1308544_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	38.3	8.6e-19
WP_061840524.1|1308663_1309731_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014124963.1|1309963_1310617_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_069028976.1|1310698_1311154_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_061840521.1|1311431_1311920_-	dihydrofolate reductase	NA	A0A1L7N103	Ralstonia_phage	34.0	1.2e-20
WP_014124966.1|1311936_1312884_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	63.4	2.1e-119
WP_069028977.1|1312903_1314784_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.5	1.3e-51
WP_069028978.1|1314994_1317130_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_014124969.1|1317433_1318723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028979.1|1318836_1319646_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_069028980.1|1319673_1320732_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.5	7.2e-15
WP_014124972.1|1321133_1321529_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	37.0	2.7e-15
WP_069028981.1|1321625_1322108_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_061840503.1|1322201_1322810_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	58.1	1.9e-68
WP_083207571.1|1322899_1323283_-	GtrA family protein	NA	NA	NA	NA	NA
WP_103083422.1|1323350_1323704_-	GtrA family protein	NA	NA	NA	NA	NA
WP_061840494.1|1324027_1324825_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
WP_069028982.1|1324903_1325857_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_061841153.1|1325887_1326829_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	50.7	1.7e-79
WP_061841154.1|1326883_1328728_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_069028984.1|1328835_1329129_-	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
WP_061841155.1|1329140_1329806_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_061841156.1|1329817_1330447_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_069028985.1|1330443_1331523_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_014124985.1|1331519_1332251_-	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_014124986.1|1332370_1332853_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_014124987.1|1332993_1334172_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_083207572.1|1334484_1336290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028987.1|1336362_1337490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028988.1|1337486_1337987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028989.1|1338073_1339261_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_061841171.1|1339253_1339970_-	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_069028990.1|1339977_1341132_-	CDP-glycerol--UDP-pyrophosphoryl-N- acetylglucosaminyl-N-acetylmannosamine glycerophosphotransferase	NA	NA	NA	NA	NA
WP_069028991.1|1341172_1342660_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_081106963.1|1342891_1343257_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_124175441.1|1343301_1344135_-	group II intron reverse transcriptase/maturase	NA	D4HTV9	Vibrio_phage	29.8	1.3e-14
WP_069028992.1|1344723_1346997_-	CDP-glycerol:glycerophosphate glycerophosphotransferase	NA	NA	NA	NA	NA
WP_014124543.1|1347205_1348528_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	1.5e-94
WP_069028993.1|1348760_1350491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069028994.1|1350660_1351767_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_156768846.1|1352125_1353264_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	55.1	1.8e-75
>prophage 5
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	1551411	1613725	2389470	tRNA,transposase,protease,integrase	Streptococcus_phage(30.77%)	60	1549545:1549561	1598445:1598461
1549545:1549561	attL	CATTATCATCTAATGAA	NA	NA	NA	NA
WP_069029091.1|1551411_1552341_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.9	6.0e-82
WP_083207575.1|1552387_1553602_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_069029092.1|1553594_1555187_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	48.4	1.7e-116
WP_069029093.1|1555334_1555811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014124571.1|1556029_1557352_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	43.0	1.5e-94
WP_069029094.1|1557775_1558453_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014125273.1|1558452_1559295_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014125274.1|1559493_1560681_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_069029095.1|1560944_1562276_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014125276.1|1562345_1562756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125277.1|1563076_1563295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125278.1|1563423_1563831_-	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_014125279.1|1563814_1564111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069029096.1|1564346_1565708_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_083207576.1|1565691_1566432_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_069029098.1|1566474_1567326_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_061841383.1|1567510_1568509_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_014125285.1|1568622_1569495_+	LysR family transcriptional regulator	NA	A0A2H4J8I9	uncultured_Caudovirales_phage	38.0	7.0e-08
WP_061841384.1|1569595_1570474_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014125287.1|1570559_1570721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061841385.1|1570769_1572023_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014125289.1|1572015_1572915_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.7	5.0e-25
WP_069029099.1|1573103_1573826_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_041591845.1|1574054_1574498_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A1X9I727	Streptococcus_phage	58.4	5.8e-43
WP_041591998.1|1574531_1574717_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1X9I5W4	Streptococcus_phage	68.3	4.0e-14
WP_014125293.1|1574821_1575346_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_014125294.1|1575667_1576453_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_014125295.1|1576454_1577318_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_014125296.1|1577330_1578695_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_014125297.1|1578702_1579131_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_014125298.1|1579133_1579637_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_014125299.1|1579639_1580875_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_014125300.1|1580917_1581655_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA	NA
WP_061840948.1|1581670_1582591_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_014125302.1|1583059_1583284_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_069029100.1|1583331_1584300_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_014125304.1|1584310_1584751_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_050989779.1|1585293_1585809_-	nucleoside 2-deoxyribosyltransferase	NA	K4I206	Lactobacillus_phage	32.9	1.6e-15
WP_014125310.1|1585783_1586425_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	46.5	3.4e-44
WP_069029101.1|1586604_1586835_-	YkuJ family protein	NA	NA	NA	NA	NA
WP_069029102.1|1586925_1587804_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014125313.1|1588155_1589397_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_061840951.1|1589430_1590435_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_061840952.1|1590688_1591666_+	membrane dipeptidase	NA	NA	NA	NA	NA
WP_014125316.1|1591673_1591871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069029103.1|1592037_1593765_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	30.7	4.3e-17
WP_014125318.1|1593764_1594031_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_014125319.1|1594192_1594390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014125320.1|1594713_1596957_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.6	4.3e-126
WP_061841338.1|1597100_1597418_+	DUF1827 family protein	NA	NA	NA	NA	NA
WP_069029104.1|1597491_1599072_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	27.9	7.4e-32
1598445:1598461	attR	CATTATCATCTAATGAA	NA	NA	NA	NA
WP_061841340.1|1599259_1600639_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_061841341.1|1600833_1601271_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014125325.1|1601566_1602100_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_061841342.1|1602195_1603338_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_069029105.1|1603327_1604125_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_014123813.1|1604662_1606093_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_069029106.1|1606118_1610456_-	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	34.3	1.5e-13
WP_069029107.1|1610668_1612375_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_061840602.1|1612459_1613725_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 6
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	1805296	1818219	2389470		Streptococcus_phage(50.0%)	13	NA	NA
WP_069029146.1|1805296_1807492_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	65.8	6.0e-282
WP_061840406.1|1807516_1808119_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	57.1	4.6e-51
WP_061840407.1|1808572_1809700_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_069029147.1|1809753_1810620_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	58.7	6.0e-84
WP_061840409.1|1810685_1811042_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	62.2	1.1e-07
WP_061840410.1|1811028_1811859_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_061840411.1|1811882_1812815_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	35.0	4.2e-35
WP_014124102.1|1812857_1813190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061840412.1|1813186_1813840_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.7	8.3e-54
WP_069029148.1|1813869_1814466_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_061840413.1|1814527_1814839_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_069029149.1|1814856_1816599_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	44.3	1.7e-53
WP_061840414.1|1816818_1818219_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	28.9	2.7e-41
>prophage 7
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	1938971	1947262	2389470		Lactobacillus_phage(50.0%)	6	NA	NA
WP_061840799.1|1938971_1940741_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.9	9.8e-49
WP_061840800.1|1940737_1942450_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	21.8	1.4e-07
WP_061840801.1|1942679_1944149_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.6	2.3e-80
WP_069029201.1|1944492_1945197_+	deoxynucleoside kinase	NA	K4I4F1	Lactobacillus_phage	41.0	2.9e-44
WP_061840803.1|1945396_1946005_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.8	4.1e-55
WP_061840804.1|1946023_1947262_+	NADPH-dependent FMN reductase	NA	A0A2P0ZL82	Lactobacillus_phage	61.8	8.3e-63
>prophage 8
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	1957707	1966111	2389470		Bacillus_phage(50.0%)	7	NA	NA
WP_069029204.1|1957707_1959570_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.1	3.7e-38
WP_061840811.1|1959559_1961299_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.0	5.6e-41
WP_069029205.1|1961527_1962232_-	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	30.9	2.4e-22
WP_061840813.1|1962338_1962812_-	SUF system NifU family Fe-S cluster assembly protein	NA	A0A2H4N7M4	Lake_Baikal_phage	28.5	4.5e-09
WP_061840814.1|1962798_1964034_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.8	6.9e-110
WP_061840815.1|1964030_1965323_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_014123956.1|1965337_1966111_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	25.1	1.2e-06
>prophage 9
NZ_CP012047	Tetragenococcus halophilus strain MJ4, complete genome	2389470	1979435	2026880	2389470	head,terminase,transposase,capsid,portal,tRNA,tail	Enterococcus_phage(17.65%)	42	NA	NA
WP_061841148.1|1979435_1981448_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.6	4.0e-99
WP_061841147.1|1981979_1982801_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.4	2.0e-25
WP_061841146.1|1982886_1984248_-	magnesium transporter	NA	NA	NA	NA	NA
WP_061841145.1|1984893_1985892_-	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	44.3	4.1e-60
WP_061841144.1|1985958_1986918_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.7e-23
WP_014125482.1|1986914_1987973_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.3	1.1e-18
WP_069029211.1|1987975_1989019_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_069029212.1|1989018_1989960_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014125485.1|1990049_1990385_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_069029213.1|1990455_1992114_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014125487.1|1992325_1993951_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014125488.1|1993979_1994687_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_014125489.1|1994901_1997334_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	49.9	5.2e-85
WP_014125490.1|1997418_1998225_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014125491.1|1998241_1998877_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.4	7.8e-25
WP_041591850.1|1998888_1999530_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_069029214.1|2000348_2001224_+	cytochrome P450	NA	NA	NA	NA	NA
WP_069029215.1|2001345_2002449_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.5	2.8e-22
WP_069029216.1|2002606_2003965_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_061841402.1|2004143_2004515_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_069029217.1|2004581_2006657_-	DNA topoisomerase III	NA	NA	NA	NA	NA
WP_069029218.1|2006589_2006967_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_069029219.1|2007095_2008217_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_014125500.1|2008522_2008861_-	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_069029220.1|2008903_2010061_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	38.8	1.2e-34
WP_061841407.1|2010148_2011120_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	30.5	1.5e-35
WP_061841408.1|2011183_2011723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069029221.1|2011922_2013284_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_069029222.1|2013551_2015438_+	peptidase M13	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.5	2.4e-77
WP_061840710.1|2015480_2016173_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_061840711.1|2016197_2016479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061840712.1|2016482_2017052_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_069029223.1|2017784_2018111_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_069029224.1|2018094_2018385_-|head,tail	phage gp6-like head-tail connector protein	head,tail	V5US31	Enterococcus_phage	35.5	6.8e-08
WP_069029225.1|2018494_2019991_-|capsid	phage major capsid protein	capsid	A0A0M4RDZ4	Enterococcus_phage	34.1	3.1e-40
WP_069029226.1|2019977_2021144_-|portal	phage portal protein	portal	A0A2H4JB06	uncultured_Caudovirales_phage	33.0	9.9e-58
WP_069029228.1|2021296_2022988_-|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	43.5	1.1e-126
WP_069029229.1|2022980_2023457_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_069029230.1|2023875_2024262_-	HNH endonuclease	NA	Q8SBK4	Clostridium_phage	38.9	3.4e-15
WP_069029231.1|2024251_2024761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069029232.1|2024765_2025014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069029233.1|2025281_2026880_-	DNA primase	NA	A0A1B1P7L5	Bacillus_phage	27.7	6.8e-25
