The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016449	Hydrogenophaga sp. RAC07 chromosome, complete genome	4674684	2098605	2106908	4674684		Diachasmimorpha_longicaudata_entomopoxvirus(16.67%)	9	NA	NA
WP_069046690.1|2098605_2099859_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.9	4.6e-45
WP_156775606.1|2100609_2101122_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA	NA
WP_172823093.1|2101420_2102128_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	41.6	1.5e-40
WP_069046692.1|2102127_2102466_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_069046693.1|2102471_2104343_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.4	6.0e-97
WP_069048901.1|2104371_2104890_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_069046694.1|2104955_2105279_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	57.9	5.5e-27
WP_069046695.1|2105291_2105678_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	76.0	2.5e-50
WP_069046696.1|2105690_2106908_-	IscS subfamily cysteine desulfurase	NA	A0A2K9L679	Tupanvirus	21.4	4.1e-06
>prophage 2
NZ_CP016449	Hydrogenophaga sp. RAC07 chromosome, complete genome	4674684	2220653	2230386	4674684		uncultured_Mediterranean_phage(50.0%)	9	NA	NA
WP_069048915.1|2220653_2221349_+	Bax inhibitor-1 family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	31.1	2.0e-18
WP_069046783.1|2221478_2221832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069046784.1|2221850_2223332_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	24.0	9.1e-24
WP_069046785.1|2223438_2224224_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_083240183.1|2224236_2225124_-	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	33.7	2.5e-05
WP_083240184.1|2225213_2225855_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.7	1.5e-28
WP_069046786.1|2226037_2226838_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	50.0	5.5e-60
WP_069046787.1|2226962_2227958_+	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA	NA
WP_069046788.1|2227974_2230386_+	serine/threonine protein kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	37.4	2.5e-23
>prophage 3
NZ_CP016449	Hydrogenophaga sp. RAC07 chromosome, complete genome	4674684	3065045	3110399	4674684	transposase,integrase	Shigella_phage(50.0%)	38	3081418:3081433	3111996:3112011
WP_069047383.1|3065045_3066158_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_069047385.1|3066961_3067879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156775490.1|3067875_3068445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156775491.1|3068417_3068918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083240200.1|3068984_3069689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083239987.1|3071582_3072251_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_069047389.1|3072858_3073131_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_069047390.1|3073351_3074356_-	DUF4917 family protein	NA	NA	NA	NA	NA
WP_069048998.1|3074389_3075115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047391.1|3075322_3075619_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	40.7	3.2e-05
WP_156775493.1|3075615_3076386_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	42.1	1.1e-36
WP_083239989.1|3076276_3077653_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	31.9	4.6e-38
WP_069047393.1|3077994_3079716_-	DUF2326 domain-containing protein	NA	NA	NA	NA	NA
WP_069047394.1|3079712_3079961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047395.1|3079957_3080878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047396.1|3080915_3081122_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_069047397.1|3081275_3081548_+	hypothetical protein	NA	NA	NA	NA	NA
3081418:3081433	attL	TCGAGCAGGAGACCGC	NA	NA	NA	NA
WP_069047398.1|3082101_3083472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047399.1|3083475_3084822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047401.1|3085557_3086751_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_069047402.1|3087277_3087727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047403.1|3087949_3089161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069047404.1|3089157_3092580_-	ATP-dependent exonuclease SbcCD, C subunit-like protein	NA	NA	NA	NA	NA
WP_069047405.1|3092572_3093265_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_069047406.1|3093298_3094789_-	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
WP_069047407.1|3095181_3095778_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_069047408.1|3095770_3096796_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_069047409.1|3096972_3097452_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_156775495.1|3097918_3098566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083239990.1|3098923_3100402_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_156775496.1|3102095_3103181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156775497.1|3103198_3103585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069047413.1|3104207_3104693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069047415.1|3105622_3106003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156775498.1|3105999_3106188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156775499.1|3106284_3107193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156775500.1|3107189_3108470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069047418.1|3109274_3110399_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A059VF45	Pseudomonas_phage	37.3	2.0e-63
3111996:3112011	attR	TCGAGCAGGAGACCGC	NA	NA	NA	NA
>prophage 4
NZ_CP016449	Hydrogenophaga sp. RAC07 chromosome, complete genome	4674684	3936028	3944289	4674684		Acinetobacter_phage(50.0%)	8	NA	NA
WP_069048050.1|3936028_3937219_-	elongation factor Tu	NA	M4M9V7	Vibrio_phage	70.6	2.6e-05
WP_069048051.1|3937746_3938415_-	uracil-DNA glycosylase	NA	A0A2D1AFC0	Eptesicus_fuscus_gammaherpesvirus	50.5	4.2e-45
WP_069048052.1|3938419_3939220_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	52.1	3.8e-61
WP_069048053.1|3939234_3940278_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	46.4	9.1e-79
WP_069048054.1|3940300_3940939_-	LysE family translocator	NA	NA	NA	NA	NA
WP_069048055.1|3940955_3942110_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_069049081.1|3942190_3942775_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	59.8	2.5e-62
WP_069048056.1|3942789_3944289_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	29.3	9.5e-37
>prophage 5
NZ_CP016449	Hydrogenophaga sp. RAC07 chromosome, complete genome	4674684	4531725	4537868	4674684		Enterobacteria_phage(33.33%)	7	NA	NA
WP_069049142.1|4531725_4532817_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	31.2	3.4e-44
WP_069048545.1|4532824_4533193_-	FdtA/QdtA family cupin domain-containing protein	NA	NA	NA	NA	NA
WP_069049143.1|4533201_4534380_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2K9L0G1	Tupanvirus	34.7	5.2e-30
WP_069048546.1|4534458_4535007_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.1	1.3e-44
WP_069048547.1|4535003_4535891_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.5	2.8e-97
WP_069048548.1|4535901_4536801_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	31.6	6.5e-25
WP_069048549.1|4536797_4537868_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.8	5.5e-87
>prophage 6
NZ_CP016449	Hydrogenophaga sp. RAC07 chromosome, complete genome	4674684	4619048	4641954	4674684	transposase,integrase	Shigella_phage(33.33%)	23	4633294:4633308	4653063:4653077
WP_066273726.1|4619048_4619345_+|transposase	transposase	transposase	U5P4I9	Shigella_phage	42.0	6.5e-06
WP_083240116.1|4619341_4620112_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.6	1.8e-36
WP_083239850.1|4620002_4621379_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	31.7	2.1e-38
WP_156775559.1|4621922_4622144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069048631.1|4622333_4624364_+	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_069048632.1|4624652_4625132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069048633.1|4625497_4625821_-	OmpA family protein	NA	NA	NA	NA	NA
WP_069048635.1|4626622_4627036_-	response regulator	NA	NA	NA	NA	NA
WP_069048636.1|4627032_4628637_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_083240121.1|4629315_4632366_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_156775561.1|4632624_4632816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156775562.1|4632969_4633350_+	hypothetical protein	NA	NA	NA	NA	NA
4633294:4633308	attL	GGCGCGGTGTCTGTC	NA	NA	NA	NA
WP_083240122.1|4633525_4633900_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_156775630.1|4633955_4635206_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	49.8	1.5e-75
WP_069048638.1|4635282_4635615_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_069048639.1|4635611_4636007_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_156775563.1|4636086_4636524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069048641.1|4636690_4637626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069048642.1|4638037_4638319_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_069048643.1|4638326_4638698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069048644.1|4638775_4639204_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_069048645.1|4639811_4640027_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JBP6	uncultured_Caudovirales_phage	37.1	1.8e-05
WP_083240125.1|4640430_4641954_+|integrase	site-specific integrase	integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	24.1	6.5e-17
4653063:4653077	attR	GACAGACACCGCGCC	NA	NA	NA	NA
