The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016456	Sphingobium sp. RAC03 chromosome, complete genome	3232017	512354	520600	3232017	tail,head,capsid,protease	Cyanophage(25.0%)	12	NA	NA
WP_069064970.1|512354_512906_-|tail	tail tape measure protein	tail	M4SQV9	Cyanophage	36.8	2.4e-06
WP_069064971.1|513045_513243_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_069064972.1|513239_513551_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_069064973.1|514008_514332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069064974.1|514526_514934_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_069064975.1|515117_515654_-|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_069064976.1|515653_515926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171899200.1|515922_516093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083217072.1|516079_517462_-|tail	tail fiber domain-containing protein	tail	A0A1S5R3Z4	Pseudomonas_phage	37.4	5.5e-23
WP_069064978.1|517987_519106_-|capsid	phage major capsid protein	capsid	A0A1B5FPI9	Escherichia_phage	47.0	3.6e-81
WP_069064979.1|519274_519991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069064980.1|520189_520600_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	46.5	5.4e-19
>prophage 2
NZ_CP016456	Sphingobium sp. RAC03 chromosome, complete genome	3232017	1099491	1107300	3232017		uncultured_Caudovirales_phage(83.33%)	8	NA	NA
WP_069065385.1|1099491_1100277_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.6	3.8e-21
WP_069066892.1|1100411_1101932_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_069065386.1|1101965_1102817_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	42.6	5.9e-52
WP_069065387.1|1102828_1104313_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	63.0	6.7e-168
WP_069065388.1|1104516_1105278_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	61.9	3.6e-77
WP_069065389.1|1105274_1106333_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_069065390.1|1106335_1106782_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	67.9	8.2e-45
WP_069065391.1|1106778_1107300_-	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	43.9	4.5e-26
>prophage 3
NZ_CP016456	Sphingobium sp. RAC03 chromosome, complete genome	3232017	2131760	2139310	3232017	tRNA	Synechococcus_phage(33.33%)	10	NA	NA
WP_037480038.1|2131760_2132414_+	fructose-6-phosphate aldolase	NA	A0A0C5AMY8	Cyanophage	48.6	6.8e-48
WP_069067006.1|2132703_2133423_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	33.8	4.4e-16
WP_069066068.1|2133485_2134427_+	sensor domain-containing diguanylate cyclase	NA	G3MA91	Bacillus_virus	32.7	6.0e-13
WP_069067007.1|2134404_2135166_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_069066069.1|2135179_2136088_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	28.4	9.9e-05
WP_069066070.1|2136268_2136865_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_069067008.1|2137031_2137352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037477014.1|2137512_2137971_+	VOC family protein	NA	NA	NA	NA	NA
WP_037477011.1|2138028_2138559_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.5	7.2e-24
WP_037477010.1|2138608_2139310_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	36.2	1.7e-33
>prophage 4
NZ_CP016456	Sphingobium sp. RAC03 chromosome, complete genome	3232017	2324192	2331608	3232017		uncultured_Mediterranean_phage(57.14%)	9	NA	NA
WP_069066196.1|2324192_2326016_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	39.6	2.7e-110
WP_069067021.1|2326024_2326786_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	33.8	1.7e-34
WP_069066197.1|2326782_2327373_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.1	3.4e-38
WP_037476635.1|2327400_2327637_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	70.0	2.3e-06
WP_069066198.1|2327663_2328116_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_037476637.1|2328112_2328892_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	39.8	3.2e-44
WP_037476638.1|2328969_2329098_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_069066199.1|2329459_2330419_-	cell wall hydrolase	NA	A0A141HRV8	Bacillus_phage	35.8	5.0e-07
WP_069067022.1|2330612_2331608_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	40.6	1.3e-50
>prophage 1
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	0	8220	131734	transposase	Polaribacter_phage(33.33%)	11	NA	NA
WP_046194743.1|1247_1511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069067106.1|1583_2084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150125859.1|2092_2773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046194741.1|2949_3594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069067108.1|3606_4071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046194739.1|4067_5204_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA	NA
WP_069067109.1|5200_5524_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_069067110.1|5542_6343_+	hypothetical protein	NA	A0A0F7IKG9	Polaribacter_phage	32.4	1.1e-10
WP_069067111.1|6358_6739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069067199.1|6886_7864_+	hypothetical protein	NA	G9BWC3	Planktothrix_phage	31.2	1.2e-21
WP_046194762.1|7869_8220_+	DUF3768 domain-containing protein	NA	L7TKV8	Rhizobium_phage	34.3	6.3e-08
>prophage 2
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	15809	16130	131734		Burkholderia_virus(100.0%)	1	NA	NA
WP_046194724.1|15809_16130_+	single-stranded DNA-binding protein	NA	C5IHK5	Burkholderia_virus	33.7	1.4e-06
>prophage 3
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	29752	30205	131734		Synechococcus_phage(100.0%)	1	NA	NA
WP_069067203.1|29752_30205_-	pseudoazurin	NA	C7BV88	Synechococcus_phage	38.8	5.8e-06
>prophage 4
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	36660	45173	131734	transposase	Pandoravirus(25.0%)	7	NA	NA
WP_069067137.1|36660_38403_-	PQQ-dependent dehydrogenase, methanol/ethanol family	NA	S4VRB1	Pandoravirus	23.6	3.4e-14
WP_083217235.1|38484_39105_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011950768.1|39296_40790_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_063142326.1|40786_41554_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	40.0	4.5e-43
WP_083217228.1|41996_42650_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	43.3	8.9e-48
WP_171899306.1|42687_43074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069067140.1|43079_45173_+	recombinase family protein	NA	I3VYZ3	Thermoanaerobacterium_phage	25.9	7.6e-08
>prophage 5
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	51449	55156	131734	transposase	Ralstonia_phage(50.0%)	2	NA	NA
WP_011950653.1|51449_52010_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	45.4	3.5e-29
WP_037555775.1|52141_55156_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	40.3	7.1e-209
>prophage 6
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	79528	80026	131734		Erythrobacter_phage(100.0%)	1	NA	NA
WP_069067161.1|79528_80026_+	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	52.4	2.0e-23
>prophage 7
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	104153	105146	131734		Bacillus_phage(100.0%)	1	NA	NA
WP_069067185.1|104153_105146_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXN2	Bacillus_phage	42.2	6.5e-10
>prophage 8
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	112181	113381	131734		Macacine_betaherpesvirus(100.0%)	1	NA	NA
WP_069067215.1|112181_113381_+	AAA family ATPase	NA	A0A2I6B2X3	Macacine_betaherpesvirus	36.7	3.1e-46
>prophage 9
NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	131734	117648	126330	131734	transposase	Chionoecetes_opilio_bacilliform_virus(25.0%)	4	NA	NA
WP_069067191.1|117648_121869_+	strawberry notch family protein	NA	A0A1Q3DLU0	Chionoecetes_opilio_bacilliform_virus	24.7	2.4e-08
WP_150125866.1|121934_124052_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	31.9	1.3e-28
WP_069067192.1|124137_125097_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	48.0	1.8e-65
WP_069064865.1|125391_126330_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	34.2	3.9e-28
>prophage 1
NZ_CP016454	Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence	49737	0	5600	49737	transposase,integrase	Burkholderia_phage(33.33%)	5	2328:2340	6077:6089
WP_048575154.1|475_1813_-	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_048575153.1|1890_2487_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	36.8	3.5e-27
2328:2340	attL	CCTGATCCAGACC	NA	NA	NA	NA
WP_053085608.1|2635_4117_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0M4U788	Ralstonia_phage	27.2	5.2e-19
WP_083217027.1|4116_4749_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_063142326.1|4832_5600_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	40.0	4.5e-43
6077:6089	attR	CCTGATCCAGACC	NA	NA	NA	NA
>prophage 2
NZ_CP016454	Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence	49737	26808	30515	49737	transposase	Enterobacteria_phage(50.0%)	2	NA	NA
WP_037555775.1|26808_29823_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	40.3	7.1e-209
WP_011950653.1|29954_30515_+	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	45.4	3.5e-29
>prophage 3
NZ_CP016454	Sphingobium sp. RAC03 plasmid pBSY17_4, complete sequence	49737	35592	38699	49737		Dinoroseobacter_phage(33.33%)	4	NA	NA
WP_011950391.1|35592_36222_+	transcription elongation protein SprT	NA	A0A1V0DYF5	Dinoroseobacter_phage	49.5	5.4e-42
WP_011950392.1|36304_36958_+	AAA family ATPase	NA	D4HTX7	Vibrio_phage	31.3	1.7e-19
WP_011950393.1|36954_37269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006953933.1|37832_38699_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	40.6	6.7e-27
