assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001715615.1_ASM171561v1	NZ_CP015308	Lactiplantibacillus plantarum strain LY-78 chromosome, complete genome	1	192033-192334	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas9,WYL	Orphan	GCTACTGCTAAGGCTCAAAGTACAGCTGACAATGCGTTTAGCCAAGC	47	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas9,WYL	NA|62aa|up_3|NZ_CP015308.1_183128_183314_+,NA|84aa|down_0|NZ_CP015308.1_194742_194994_+,NA|54aa|down_1|NZ_CP015308.1_194997_195159_+,NA|343aa|down_2|NZ_CP015308.1_195142_196171_+,NA|99aa|down_4|NZ_CP015308.1_197592_197889_+,NA|191aa|down_9|NZ_CP015308.1_205054_205627_+	NA|202aa|up_9|NZ_CP015308.1_178464_179070_+	pfam04586, Peptidase_S78, Caudovirus prohead serine protease	NA|116aa|up_8|NZ_CP015308.1_180827_181175_+	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|136aa|up_7|NZ_CP015308.1_181177_181585_+	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family	NA|127aa|up_6|NZ_CP015308.1_181584_181965_+	pfam05657, DUF806, Protein of unknown function (DUF806)	NA|218aa|up_5|NZ_CP015308.1_181980_182634_+	pfam04630, Phage_TTP_1, Phage tail tube protein	NA|125aa|up_4|NZ_CP015308.1_182709_183084_+	pfam06896, Phage_TAC_3, Phage tail assembly chaperone proteins, TAC	NA|62aa|up_3|NZ_CP015308.1_183128_183314_+	NA	NA|1453aa|up_2|NZ_CP015308.1_183345_187704_+	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains	NA|590aa|up_1|NZ_CP015308.1_187777_189547_+	pfam05709, Sipho_tail, Phage tail protein	NA|793aa|up_0|NZ_CP015308.1_189613_191992_+	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|84aa|down_0|NZ_CP015308.1_194742_194994_+	NA	NA|54aa|down_1|NZ_CP015308.1_194997_195159_+	NA	NA|343aa|down_2|NZ_CP015308.1_195142_196171_+	NA	NA|372aa|down_3|NZ_CP015308.1_196476_197592_+	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|99aa|down_4|NZ_CP015308.1_197592_197889_+	NA	NA|126aa|down_5|NZ_CP015308.1_197875_198253_+	pfam04531, Phage_holin_1, Bacteriophage holin	NA|404aa|down_6|NZ_CP015308.1_199496_200708_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|264aa|down_7|NZ_CP015308.1_202946_203738_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|395aa|down_8|NZ_CP015308.1_203718_204903_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|191aa|down_9|NZ_CP015308.1_205054_205627_+	NA
GCF_001715615.1_ASM171561v1	NZ_CP015308	Lactiplantibacillus plantarum strain LY-78 chromosome, complete genome	2	849119-854247	1	CRT	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas9,WYL	Orphan	GAATCNGANTCNCTNTCNGANTCNGANTCACTNTC	35	0	0	NA	NA	NA	56	56	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas9,WYL	NA|66aa|up_3|NZ_CP015308.1_843427_843625_-,NA|545aa|up_0|NZ_CP015308.1_846726_848361_-,NA|240aa|down_2|NZ_CP015308.1_862370_863090_+	NA|279aa|up_9|NZ_CP015308.1_835248_836085_+	cd01171, YXKO-related, B	NA|247aa|up_8|NZ_CP015308.1_836221_836962_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|557aa|up_7|NZ_CP015308.1_836969_838640_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|809aa|up_6|NZ_CP015308.1_839163_841590_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|228aa|up_5|NZ_CP015308.1_842052_842736_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|176aa|up_4|NZ_CP015308.1_842804_843332_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|66aa|up_3|NZ_CP015308.1_843427_843625_-	NA	NA|509aa|up_2|NZ_CP015308.1_843654_845181_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|503aa|up_1|NZ_CP015308.1_845191_846700_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|545aa|up_0|NZ_CP015308.1_846726_848361_-	NA	NA|501aa|down_0|NZ_CP015308.1_859332_860835_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|397aa|down_1|NZ_CP015308.1_860969_862160_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|240aa|down_2|NZ_CP015308.1_862370_863090_+	NA	NA|499aa|down_3|NZ_CP015308.1_863165_864662_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|310aa|down_4|NZ_CP015308.1_865062_865992_-	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|461aa|down_5|NZ_CP015308.1_866105_867488_+	PRK11387, PRK11387, S-methylmethionine permease	NA|325aa|down_6|NZ_CP015308.1_867819_868794_+	pfam00762, Ferrochelatase, Ferrochelatase	NA|442aa|down_7|NZ_CP015308.1_868765_870091_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|279aa|down_8|NZ_CP015308.1_870929_871766_+	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|173aa|down_9|NZ_CP015308.1_871880_872399_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_001715615.1_ASM171561v1	NZ_CP015308	Lactiplantibacillus plantarum strain LY-78 chromosome, complete genome	3	1823736-1824036	2,1,2	CRT,PILER-CR,CRISPRCasFinder	no	csa3,cas2,cas1,cas9	DEDDh,DinG,cas3,csa3,cas2,cas1,cas9,WYL	Type II-A,Type II-C,Type II-B	GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC,GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC,GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	4,3,3	4	TypeII-A,TypeII-C,TypeII-B	DEDDh,DinG,cas3,csa3,cas2,cas1,cas9,WYL	NA,NA|236aa|down_4|NZ_CP015308.1_1831289_1831997_-	csa3|100aa|up_9|NZ_CP015308.1_1814995_1815295_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|411aa|up_8|NZ_CP015308.1_1815385_1816618_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|95aa|up_7|NZ_CP015308.1_1817006_1817291_+	smart00850, LytTR, LytTr DNA-binding domain	NA|152aa|up_6|NZ_CP015308.1_1817287_1817743_+	pfam11457, DUF3021, Protein of unknown function (DUF3021)	NA|141aa|up_5|NZ_CP015308.1_1817830_1818253_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|158aa|up_4|NZ_CP015308.1_1818398_1818872_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|201aa|up_3|NZ_CP015308.1_1818984_1819587_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|65aa|up_2|NZ_CP015308.1_1819652_1819847_+	pfam04024, PspC, PspC domain	NA|253aa|up_1|NZ_CP015308.1_1819889_1820648_-	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|913aa|up_0|NZ_CP015308.1_1820932_1823671_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	cas2|102aa|down_0|NZ_CP015308.1_1824734_1825040_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_1|NZ_CP015308.1_1825017_1825923_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1359aa|down_2|NZ_CP015308.1_1826117_1830194_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|261aa|down_3|NZ_CP015308.1_1830482_1831265_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|236aa|down_4|NZ_CP015308.1_1831289_1831997_-	NA	NA|455aa|down_5|NZ_CP015308.1_1832126_1833491_-	PRK10746, PRK10746, putative transport protein YifK; Provisional	NA|157aa|down_6|NZ_CP015308.1_1833723_1834194_+	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|531aa|down_7|NZ_CP015308.1_1834309_1835902_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|247aa|down_8|NZ_CP015308.1_1836145_1836886_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|400aa|down_9|NZ_CP015308.1_1836967_1838167_-	TIGR02358, purine-cytosine_transport_protein, putative hydroxymethylpyrimidine transporter CytX
