The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	298735	307208	2873208		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|298735_299302_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|299304_300333_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|300325_301810_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|301788_303978_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|303970_304642_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|304643_304907_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|304906_305611_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|305614_306739_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|306725_307208_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 2
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	327194	374778	2873208	bacteriocin,protease	Enterococcus_phage(20.0%)	48	NA	NA
WP_001088780.1|327194_328376_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|328413_328743_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|328981_329803_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150195.1|329795_330599_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|330585_332259_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190626.1|332245_333607_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|333788_334727_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620953.1|334778_335330_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|335494_335710_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_001790177.1|335773_335905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|335950_336910_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|337386_337743_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|337831_339313_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|339318_339606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795544.1|339884_340175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571178.1|340262_340904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000668623.1|340900_341221_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|341223_343188_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001790097.1|343231_343504_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|343513_343615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|344531_345134_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|345148_345325_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|345523_346510_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|346590_346809_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|347018_347588_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|348074_349586_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|349724_351083_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_076035548.1|351099_353424_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_105165733.1|353642_354446_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	4.6e-30
WP_001049959.1|354747_356310_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_001795833.1|356309_356570_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340118.1|356553_358035_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|358467_359643_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154222.1|359620_360811_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600392.1|360923_361433_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001288681.1|361626_362385_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570699.1|362526_364095_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|364436_365522_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|365716_366487_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395153.1|366764_368609_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000062417.1|368618_370004_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669939.1|370024_370879_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|370875_371685_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|371701_372337_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|372353_372701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|372886_373480_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214075.1|373583_373949_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896697.1|373971_374778_+|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
>prophage 3
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	471524	487353	2873208	capsid,integrase	Staphylococcus_phage(64.71%)	21	470845:470861	484801:484817
470845:470861	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_001035618.1|471524_472079_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000801979.1|472313_473282_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_000253084.1|473710_474202_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000657538.1|474385_475444_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000884055.1|475430_475637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081424.1|475861_476206_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000985235.1|476876_479249_-	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001103959.1|479340_479589_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000403840.1|479589_479973_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001231376.1|479974_480178_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784892.1|480144_480318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000091732.1|480329_480602_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000243849.1|480594_480858_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_001260004.1|481050_481383_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000281658.1|481394_481853_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001033321.1|481869_482598_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000734020.1|482621_483350_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_000266158.1|483437_484658_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000732326.1|484800_485622_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
484801:484817	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_000520233.1|485639_486335_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000571218.1|486327_487353_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
>prophage 4
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	566044	580775	2873208		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|566044_566806_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|566802_567759_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|567745_568717_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|568755_568911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|569424_570396_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|570513_572619_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|572581_572980_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|573780_574647_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|574666_575167_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193752.1|575507_577013_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|577090_577192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|577282_578200_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197273.1|578823_579366_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|579716_580775_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 5
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	592747	600567	2873208		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|592747_593899_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|593882_594476_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|594826_595495_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|595496_595916_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|595919_596633_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|596731_597316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|597595_598036_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|598377_598851_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|598825_599512_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|599511_600567_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 6
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2110310	2197956	2873208	tail,capsid,protease,holin,portal,integrase,terminase,head	Staphylococcus_phage(92.21%)	111	2124177:2124194	2149108:2149125
WP_000197635.1|2110310_2111054_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|2111228_2111513_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|2111588_2113205_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|2113906_2114119_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|2114115_2114706_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_001797573.1|2115023_2115401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|2115565_2116009_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001045079.1|2116861_2118169_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|2118329_2119241_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812010.1|2119302_2120148_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206639.1|2120519_2121743_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|2122177_2123233_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|2123254_2124271_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2124177:2124194	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000857199.1|2125389_2126427_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_001549185.1|2126617_2127331_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705246.1|2127408_2127591_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2127794_2128136_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2128141_2129074_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2129089_2129803_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2129765_2129939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854072.1|2129935_2130199_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2130214_2130430_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000180411.1|2130418_2130748_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001148642.1|2130798_2131551_+	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_001001356.1|2131566_2131743_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_000549548.1|2131739_2131970_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001120199.1|2132028_2132349_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_001285960.1|2132345_2132507_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001549178.1|2132601_2132862_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_000291513.1|2132901_2133162_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001205732.1|2133170_2133434_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700561.1|2133442_2135386_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_000138475.1|2135387_2136308_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|2136388_2137006_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934753.1|2137006_2137477_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_000148333.1|2137506_2138400_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338530.1|2138406_2138625_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401977.1|2138633_2139038_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000101288.1|2139050_2139419_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131383.1|2139422_2139665_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_001549172.1|2139673_2140045_+	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_001065101.1|2140037_2140274_+	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_000700108.1|2140263_2140506_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181819.1|2140498_2141032_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_001282074.1|2141068_2141314_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2141310_2141517_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2141513_2141900_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2141896_2142046_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|2142045_2142246_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|2142273_2142690_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2142921_2143221_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|2143350_2143695_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|2143691_2145353_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|2145368_2146556_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2146539_2147277_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|2147300_2148446_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|2148465_2148750_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|2148739_2149024_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|2149007_2149370_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2149108:2149125	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114229.1|2149366_2149771_+	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000565500.1|2149767_2150172_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000260578.1|2150175_2150820_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_094969769.1|2150846_2151086_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_001096354.1|2151135_2151486_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_001551779.1|2151730_2156260_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_000567394.1|2156256_2157741_+|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_000582165.1|2157756_2161542_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|2161531_2161684_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|2161730_2162018_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|2162075_2162372_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|2162521_2162698_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|2162750_2162858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|2162909_2163164_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|2163175_2163931_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|2164121_2164613_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|2165692_2166142_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|2166826_2167177_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2167229_2167490_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2167800_2167980_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001549158.1|2168937_2170692_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068542.1|2171316_2172603_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2172802_2172901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|2173143_2173320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2173583_2173964_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|2173960_2174857_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|2174857_2175538_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2175534_2176407_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|2176406_2177147_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|2177212_2177776_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|2177896_2178421_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|2178480_2179038_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|2179034_2179877_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|2179933_2180974_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|2181424_2181598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|2182170_2182572_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|2182841_2183870_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|2183989_2185369_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|2185420_2185594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|2185788_2186718_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|2186770_2187331_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|2187702_2188800_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000323167.1|2189004_2190567_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|2190577_2190685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|2190756_2191551_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|2191570_2192647_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|2192830_2194300_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|2194292_2195114_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011538.1|2195384_2195987_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|2195967_2196141_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|2196432_2196759_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|2196789_2197956_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 7
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2257928	2359143	2873208	tRNA,protease,transposase	Staphylococcus_phage(87.72%)	100	NA	NA
WP_001549130.1|2257928_2259290_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|2259782_2260844_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|2261101_2262559_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000590809.1|2262551_2263274_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000379978.1|2263424_2264552_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|2264556_2265027_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2265185_2265785_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2265809_2265962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790153.1|2266257_2266620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2266738_2267134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2267329_2268715_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2269177_2269999_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|2270161_2271274_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2271295_2271919_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2272274_2272739_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|2272917_2274042_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2274110_2274455_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|2274837_2274936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2275226_2276423_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|2276412_2279349_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|2279345_2280287_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2280407_2281370_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2281574_2282132_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2282864_2283230_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|2283371_2283794_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|2283927_2284668_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|2284660_2285884_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|2286007_2286511_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|2286673_2286784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2286773_2287811_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2287868_2288792_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|2288815_2290216_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|2290538_2291093_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000226886.1|2294349_2294889_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|2295687_2296623_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|2296624_2297608_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|2297849_2297993_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|2298729_2298873_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|2298937_2301931_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|2301923_2303168_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|2303183_2303702_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|2303711_2305085_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|2305107_2305800_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|2305796_2306558_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|2306554_2307253_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|2307726_2308293_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|2309256_2309964_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|2310088_2310811_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|2310868_2311588_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|2311708_2312428_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|2312376_2312484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|2312585_2313302_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|2313452_2314172_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|2314236_2314371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028659.1|2314534_2316091_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_000072576.1|2316083_2317283_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|2318132_2322245_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_001037045.1|2322765_2323143_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|2323490_2323592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|2323714_2323810_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|2324012_2324156_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|2324759_2325143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2325153_2325330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|2325331_2325517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|2325630_2326272_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|2326489_2327041_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|2327138_2327483_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000070653.1|2328225_2329221_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|2329301_2329952_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|2330254_2330710_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|2330868_2332347_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|2332351_2333353_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|2333349_2333607_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|2333672_2334146_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|2334150_2334897_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000639100.1|2335355_2335757_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_000109906.1|2335892_2337485_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2337855_2339049_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|2339173_2340082_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|2340293_2341127_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_105165747.1|2341189_2342827_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	96.7	2.6e-282
WP_000623471.1|2343222_2343576_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200541.1|2343572_2343938_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000091445.1|2344193_2344496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096459.1|2344755_2345469_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2345908_2346544_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|2346839_2347283_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|2347269_2347713_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|2347825_2348296_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|2348494_2348719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2348994_2349849_+	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|2350143_2350539_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|2350556_2351849_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|2351848_2352163_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|2352685_2354188_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|2354668_2355712_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493892.1|2355718_2356351_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|2356361_2357543_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|2357555_2358020_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|2358141_2359143_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 8
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2362303	2375032	2873208	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|2362303_2362867_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2362863_2363817_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|2363926_2365108_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001549041.1|2365395_2367813_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|2367834_2368146_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050548.1|2368471_2375032_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 9
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2500488	2509531	2873208	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|2500488_2501493_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|2501494_2502520_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2502542_2503682_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2503700_2503961_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|2504235_2506515_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|2506717_2508991_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|2509012_2509531_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 10
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2578668	2586980	2873208	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|2578668_2580468_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|2580691_2581798_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_058102383.1|2581928_2582606_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|2582608_2583709_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|2583822_2585169_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|2585178_2586069_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|2586194_2586980_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 11
NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2873208	2647798	2730048	2873208	tail,capsid,holin,plate,tRNA,portal,terminase,integrase,protease,head	Staphylococcus_phage(85.14%)	102	2647774:2647794	2693666:2693686
2647774:2647794	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000264751.1|2647798_2649004_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|2649129_2649744_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|2649740_2649887_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|2649976_2650372_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755722.1|2650400_2650835_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000525001.1|2650852_2651314_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000429766.1|2651326_2651656_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|2651816_2652008_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|2652091_2652268_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001548903.1|2652264_2652504_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|2652550_2652766_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|2652790_2653054_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000829612.1|2653319_2653637_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|2653629_2653932_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|2653936_2654197_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985979.1|2654210_2654573_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000762552.1|2654569_2655736_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|2655761_2656319_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001801657.1|2656386_2658339_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|2658351_2658537_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2658536_2658938_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|2658937_2659195_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|2659197_2659398_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|2659412_2659655_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_001065039.1|2659669_2659918_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|2659910_2660447_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|2660483_2660690_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|2660686_2660890_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|2660882_2661119_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|2661111_2661498_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595263.1|2661494_2661647_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|2661714_2661915_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|2662202_2664650_+	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|2664758_2664857_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001548892.1|2664990_2665281_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_000528512.1|2666640_2667078_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160686.1|2667234_2667549_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000778933.1|2667675_2667981_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|2667970_2669662_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|2669666_2670905_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|2670888_2671662_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|2671673_2672837_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|2672905_2673184_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|2673195_2673528_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|2673524_2673926_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|2673926_2674322_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|2674356_2674998_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|2675089_2675545_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|2675602_2675953_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2675994_2676153_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003408.1|2676166_2682367_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_001190533.1|2682366_2683191_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|2683199_2684783_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|2684782_2685073_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|2685088_2686999_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|2686998_2688465_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|2688464_2688854_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|2688846_2689011_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|2689056_2689356_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|2689491_2689794_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909220.1|2689804_2691259_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000239545.1|2691648_2692587_+	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_024937002.1|2692582_2693566_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000470336.1|2693814_2694000_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
2693666:2693686	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000476873.1|2694090_2695008_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000472936.1|2695064_2696003_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|2695995_2696202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|2696216_2697131_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001789947.1|2697329_2697449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186912.1|2697727_2698273_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|2698378_2698627_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|2698734_2699688_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902119.1|2699677_2701057_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_000069282.1|2701209_2702670_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_001789943.1|2702794_2702911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|2703071_2704058_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681756.1|2704172_2705141_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|2705217_2705877_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001789945.1|2705907_2706024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001789944.1|2706140_2706332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133954.1|2706588_2707764_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165536.1|2707985_2709296_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161738.1|2709312_2710311_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|2710481_2710754_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450553.1|2711184_2711757_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|2711759_2712485_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096471.1|2712486_2713446_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|2713537_2713987_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|2714195_2714396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|2714781_2715948_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776323.1|2715973_2717038_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245895.1|2717047_2718346_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|2718352_2719597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000004947.1|2719610_2720186_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|2720175_2720763_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|2720834_2721515_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839926.1|2721851_2722169_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690027.1|2722409_2723552_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361544.1|2723556_2724759_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000049919.1|2724745_2725717_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|2725740_2728434_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|2728755_2730048_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 1
NZ_CP016857	Staphylococcus aureus subsp. aureus strain 1971.C01 plasmid p1971.C01c, complete sequence	37941	10133	17156	37941	transposase	Staphylococcus_phage(50.0%)	9	NA	NA
WP_000690637.1|10133_10712_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001037130.1|10934_11120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105991.1|11381_12056_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001096887.1|12385_13180_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_105165730.1|13272_13803_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	94.4	4.3e-85
WP_001105956.1|14575_15250_-|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	98.7	2.6e-127
WP_000505741.1|15279_15483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000369394.1|15496_16234_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000793446.1|16226_17156_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
