assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	1	425823-426131	1,1	CRT,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	425936-425961|425936-425961|426050-426075|426076-426108	NZ_CP016858.1_532140-532115|NZ_CP016858.1_985867-985892|NZ_CP016858.1_569234-569259|NZ_CP016858.1_488587-488555	NA:NA	4,1	4	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|301aa|up_9|NZ_CP016858.1_409947_410850_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP016858.1_411015_414669_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP016858.1_414669_418146_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP016858.1_418305_418881_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP016858.1_418896_419421_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP016858.1_419425_420001_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP016858.1_420325_421657_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP016858.1_422007_423213_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP016858.1_423202_424582_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP016858.1_424823_425753_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP016858.1_426255_427500_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP016858.1_427608_428799_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP016858.1_429106_430234_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP016858.1_430595_430973_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP016858.1_431388_431982_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP016858.1_432045_432429_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP016858.1_432559_434965_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP016858.1_434957_435386_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP016858.1_435385_435727_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP016858.1_435719_437216_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	2	488835-488916	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	488859-488892|488859-488892	NZ_CP016858.1_2783787-2783820|NZ_CP016858.1_2873012-2872979	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|111aa|up_9|NZ_CP016858.1_481050_481383_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|153aa|up_8|NZ_CP016858.1_481394_481853_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|243aa|up_7|NZ_CP016858.1_481869_482598_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|up_6|NZ_CP016858.1_482621_483350_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|407aa|up_5|NZ_CP016858.1_483437_484658_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|274aa|up_4|NZ_CP016858.1_484800_485622_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP016858.1_485639_486335_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP016858.1_486327_487353_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP016858.1_487602_487899_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP016858.1_487891_488278_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP016858.1_489019_489898_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP016858.1_490076_490457_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP016858.1_490614_490971_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP016858.1_491114_491435_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP016858.1_491584_492124_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP016858.1_492206_492923_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP016858.1_493070_493493_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP016858.1_493891_494386_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP016858.1_494540_495158_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|194aa|down_9|NZ_CP016858.1_495230_495812_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	3	524784-524876	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|153aa|up_6|NZ_CP016858.1_516313_516772_-,NA	NA|791aa|up_9|NZ_CP016858.1_512751_515124_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP016858.1_515157_515898_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP016858.1_516013_516247_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP016858.1_516313_516772_-	NA	NA|435aa|up_5|NZ_CP016858.1_517111_518416_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP016858.1_518545_520063_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP016858.1_520065_520827_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP016858.1_520948_522139_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP016858.1_522277_523288_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP016858.1_523340_524354_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP016858.1_525113_525743_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP016858.1_526444_527347_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP016858.1_527589_528177_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP016858.1_528750_529695_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP016858.1_529804_530800_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP016858.1_530796_531708_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP016858.1_532587_533523_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP016858.1_533589_535029_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP016858.1_535036_535522_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP016858.1_535529_536369_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	4	532141-532226	4	CRISPRCasFinder	no	cas3	DEDDh,cas3,WYL,csa3,DinG	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	532171-532196|532171-532196	NZ_CP016858.1_569259-569234|NZ_CP016858.1_569203-569178	NA	1	1	Unclear	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|254aa|up_9|NZ_CP016858.1_520065_520827_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP016858.1_520948_522139_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP016858.1_522277_523288_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP016858.1_523340_524354_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP016858.1_525113_525743_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP016858.1_526444_527347_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP016858.1_527589_528177_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP016858.1_528750_529695_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP016858.1_529804_530800_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP016858.1_530796_531708_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP016858.1_532587_533523_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP016858.1_533589_535029_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP016858.1_535036_535522_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP016858.1_535529_536369_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP016858.1_536374_537307_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP016858.1_537968_540815_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP016858.1_540822_542808_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP016858.1_543076_543313_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP016858.1_543309_543960_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP016858.1_544133_544973_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	5	707944-708036	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|239aa|up_5|NZ_CP016858.1_702811_703528_-,NA|169aa|up_4|NZ_CP016858.1_703689_704196_-,NA|36aa|down_3|NZ_CP016858.1_711443_711551_-	NA|168aa|up_9|NZ_CP016858.1_698493_698997_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|NZ_CP016858.1_698977_699514_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|NZ_CP016858.1_701229_701604_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP016858.1_701854_702643_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP016858.1_702811_703528_-	NA	NA|169aa|up_4|NZ_CP016858.1_703689_704196_-	NA	NA|267aa|up_3|NZ_CP016858.1_704331_705132_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP016858.1_705115_705835_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP016858.1_705889_706840_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_CP016858.1_706987_707875_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP016858.1_708253_708889_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP016858.1_709276_710938_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_CP016858.1_710934_711351_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP016858.1_711443_711551_-	NA	NA|337aa|down_4|NZ_CP016858.1_711625_712636_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP016858.1_713134_713656_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP016858.1_713683_714979_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP016858.1_715018_715495_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP016858.1_715663_716200_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP016858.1_716410_717349_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	6	947125-947226	6	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|179aa|up_7|NZ_CP016858.1_938743_939280_+,NA|221aa|up_1|NZ_CP016858.1_945371_946034_+,NA|34aa|down_0|NZ_CP016858.1_947898_948000_-,NA|128aa|down_6|NZ_CP016858.1_954234_954618_+,NA|70aa|down_8|NZ_CP016858.1_955442_955652_+	NA|91aa|up_9|NZ_CP016858.1_936975_937248_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP016858.1_937646_938351_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP016858.1_938743_939280_+	NA	NA|514aa|up_6|NZ_CP016858.1_939392_940934_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP016858.1_940958_942425_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP016858.1_942462_943731_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP016858.1_943730_944309_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP016858.1_944821_945229_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP016858.1_945371_946034_+	NA	NA|319aa|up_0|NZ_CP016858.1_946151_947108_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP016858.1_947898_948000_-	NA	NA|463aa|down_1|NZ_CP016858.1_948084_949473_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP016858.1_949553_950309_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP016858.1_950800_951370_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP016858.1_951385_952909_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP016858.1_953353_953980_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP016858.1_954234_954618_+	NA	NA|194aa|down_7|NZ_CP016858.1_954683_955265_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP016858.1_955442_955652_+	NA	NA|84aa|down_9|NZ_CP016858.1_955690_955942_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	7	1423121-1423294	1,7	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	19	1423174-1423190|1423174-1423190|1423174-1423190|1423174-1423190|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259|1423244-1423259	NZ_CP016858.1_537565-537581|NZ_CP016858.1_537620-537636|NZ_CP016858.1_1067638-1067622|NZ_CP016859.1_19671-19655|NZ_CP016858.1_208084-208069|NZ_CP016858.1_308698-308713|NZ_CP016858.1_488562-488577|NZ_CP016858.1_985862-985847|NZ_CP016858.1_1588629-1588644|NZ_CP016858.1_2212513-2212528|NZ_CP016858.1_2212571-2212586|NZ_CP016858.1_2783759-2783774|NZ_CP016858.1_2868628-2868643|NZ_CP016858.1_2873040-2873025|NZ_CP016858.1_212052-212037|NZ_CP016858.1_1775235-1775250|NZ_CP016858.1_2379965-2379950|NZ_CP016858.1_2558528-2558543|NZ_CP016858.1_2826972-2826987	NA:NA	2,1	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|60aa|up_1|NZ_CP016858.1_1420080_1420260_+,NA	NA|205aa|up_9|NZ_CP016858.1_1413798_1414413_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP016858.1_1414405_1415656_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP016858.1_1415671_1416685_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP016858.1_1416653_1417232_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP016858.1_1417228_1417807_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP016858.1_1417799_1418504_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP016858.1_1418500_1419259_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP016858.1_1419255_1419888_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP016858.1_1420080_1420260_+	NA	NA|681aa|up_0|NZ_CP016858.1_1420980_1423023_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP016858.1_1423469_1424522_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP016858.1_1424508_1425381_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP016858.1_1425377_1425683_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP016858.1_1425646_1426885_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP016858.1_1427048_1427609_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP016858.1_1428456_1429119_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP016858.1_1429135_1429828_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP016858.1_1429824_1430592_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP016858.1_1430826_1431327_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP016858.1_1431329_1431806_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	8	1864414-1864607	2	CRT	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	13	1864437-1864469|1864437-1864469|1864437-1864469|1864437-1864469|1864493-1864528|1864493-1864528|1864493-1864528|1864493-1864528|1864552-1864584|1864552-1864584|1864552-1864584|1864552-1864584|1864552-1864584	NZ_CP016858.1_208101-208069|NZ_CP016858.1_532128-532160|NZ_CP016858.1_1588612-1588644|NZ_CP016858.1_2873057-2873025|NZ_CP016858.1_208157-208122|NZ_CP016858.1_2380096-2380061|NZ_CP016858.1_2212612-2212647|NZ_CP016858.1_2558569-2558604|NZ_CP016858.1_208101-208069|NZ_CP016858.1_532128-532160|NZ_CP016858.1_1588612-1588644|NZ_CP016858.1_2783742-2783774|NZ_CP016858.1_2873057-2873025	NA	3	3	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA|57aa|down_0|NZ_CP016858.1_1864666_1864837_-,NA|84aa|down_5|NZ_CP016858.1_1867976_1868228_-,NA|106aa|down_8|NZ_CP016858.1_1873352_1873670_-,NA|55aa|down_9|NZ_CP016858.1_1873914_1874079_-	NA|202aa|up_9|NZ_CP016858.1_1857308_1857914_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP016858.1_1858083_1859088_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP016858.1_1859118_1859625_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP016858.1_1859626_1860121_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP016858.1_1860183_1861443_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP016858.1_1861439_1861925_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP016858.1_1861938_1862385_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP016858.1_1862390_1862624_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP016858.1_1862630_1863230_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP016858.1_1863249_1864272_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP016858.1_1864666_1864837_-	NA	NA|117aa|down_1|NZ_CP016858.1_1864962_1865313_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP016858.1_1865414_1866626_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP016858.1_1866618_1867059_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP016858.1_1867220_1867985_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP016858.1_1867976_1868228_-	NA	NA|422aa|down_6|NZ_CP016858.1_1868616_1869882_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP016858.1_1869998_1873166_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP016858.1_1873352_1873670_-	NA	NA|55aa|down_9|NZ_CP016858.1_1873914_1874079_-	NA
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	9	1988375-1988525	8	CRISPRCasFinder	no	csa3	DEDDh,cas3,WYL,csa3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_2|NZ_CP016858.1_1985734_1985827_-,NA|35aa|up_0|NZ_CP016858.1_1987938_1988043_+,NA|364aa|down_0|NZ_CP016858.1_1988542_1989634_-,NA|77aa|down_5|NZ_CP016858.1_1993422_1993653_+	NA|369aa|up_9|NZ_CP016858.1_1975347_1976454_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP016858.1_1976453_1976888_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP016858.1_1976899_1979032_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP016858.1_1979066_1980605_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP016858.1_1981285_1983091_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP016858.1_1983322_1984105_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP016858.1_1984172_1985030_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP016858.1_1985734_1985827_-	NA	NA|379aa|up_1|NZ_CP016858.1_1986115_1987252_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP016858.1_1987938_1988043_+	NA	NA|364aa|down_0|NZ_CP016858.1_1988542_1989634_-	NA	NA|327aa|down_1|NZ_CP016858.1_1989899_1990880_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP016858.1_1990881_1991202_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP016858.1_1991353_1992019_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP016858.1_1992453_1993392_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP016858.1_1993422_1993653_+	NA	NA|458aa|down_6|NZ_CP016858.1_1994324_1995698_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP016858.1_1996155_1996569_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP016858.1_1996768_1997212_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP016858.1_1997332_1998043_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_001717685.1_ASM171768v3	NZ_CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	10	2223395-2223473	9	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,WYL,csa3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	2223418-2223450|2223418-2223450|2223418-2223450|2223418-2223450|2223418-2223450|2223418-2223450	NZ_CP016858.1_208101-208069|NZ_CP016858.1_532128-532160|NZ_CP016858.1_1588612-1588644|NZ_CP016858.1_2558511-2558543|NZ_CP016858.1_2873057-2873025|NZ_CP016858.1_2783742-2783774	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_6|NZ_CP016858.1_2218001_2218094_+,NA|37aa|up_2|NZ_CP016858.1_2221099_2221210_+,NA|138aa|up_1|NZ_CP016858.1_2221238_2221652_+,NA|129aa|down_1|NZ_CP016858.1_2224630_2225017_+,NA|92aa|down_6|NZ_CP016858.1_2229002_2229278_-	NA|177aa|up_9|NZ_CP016858.1_2215317_2215848_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP016858.1_2216094_2217165_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP016858.1_2217232_2217787_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP016858.1_2218001_2218094_+	NA	NA|167aa|up_5|NZ_CP016858.1_2218175_2218676_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP016858.1_2218967_2220281_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP016858.1_2220282_2221014_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP016858.1_2221099_2221210_+	NA	NA|138aa|up_1|NZ_CP016858.1_2221238_2221652_+	NA	NA|329aa|up_0|NZ_CP016858.1_2222141_2223128_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP016858.1_2223655_2224414_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP016858.1_2224630_2225017_+	NA	NA|234aa|down_2|NZ_CP016858.1_2225031_2225733_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP016858.1_2225729_2226773_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP016858.1_2226762_2227392_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP016858.1_2227507_2228725_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP016858.1_2229002_2229278_-	NA	NA|155aa|down_7|NZ_CP016858.1_2229284_2229749_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP016858.1_2229895_2230096_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP016858.1_2230098_2231355_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
