assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001721065.1_ASM172106v1	NZ_CP012460	Enterococcus faecium strain ISMMS_VRE_7 chromosome, complete genome	1	2419589-2419665	1	CRISPRCasFinder	no	RT	csa3,cas14j,cas3,DinG,DEDDh,cas2,RT	Unclear	TACAAAATTCTACAAGTAGTCAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,cas3,DinG,DEDDh,cas2,RT,WYL	NA|109aa|up_2|NZ_CP012460.1_2415789_2416116_+,NA|73aa|up_0|NZ_CP012460.1_2417315_2417534_+,NA|63aa|down_0|NZ_CP012460.1_2420179_2420368_+,NA|204aa|down_1|NZ_CP012460.1_2420379_2420991_+,NA|101aa|down_3|NZ_CP012460.1_2422582_2422885_+,NA|116aa|down_4|NZ_CP012460.1_2422877_2423225_+,NA|49aa|down_6|NZ_CP012460.1_2424732_2424879_+,NA|105aa|down_7|NZ_CP012460.1_2425015_2425330_+,NA|258aa|down_9|NZ_CP012460.1_2425905_2426679_-	NA|513aa|up_9|NZ_CP012460.1_2410048_2411587_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|156aa|up_8|NZ_CP012460.1_2411706_2412174_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|148aa|up_7|NZ_CP012460.1_2412692_2413136_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_6|NZ_CP012460.1_2413151_2413544_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|389aa|up_5|NZ_CP012460.1_2413632_2414799_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|217aa|up_4|NZ_CP012460.1_2414853_2415504_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|68aa|up_3|NZ_CP012460.1_2415578_2415782_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|109aa|up_2|NZ_CP012460.1_2415789_2416116_+	NA	NA|348aa|up_1|NZ_CP012460.1_2416270_2417314_+	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|73aa|up_0|NZ_CP012460.1_2417315_2417534_+	NA	NA|63aa|down_0|NZ_CP012460.1_2420179_2420368_+	NA	NA|204aa|down_1|NZ_CP012460.1_2420379_2420991_+	NA	NA|464aa|down_2|NZ_CP012460.1_2420975_2422367_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|101aa|down_3|NZ_CP012460.1_2422582_2422885_+	NA	NA|116aa|down_4|NZ_CP012460.1_2422877_2423225_+	NA	NA|425aa|down_5|NZ_CP012460.1_2423284_2424559_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|49aa|down_6|NZ_CP012460.1_2424732_2424879_+	NA	NA|105aa|down_7|NZ_CP012460.1_2425015_2425330_+	NA	NA|83aa|down_8|NZ_CP012460.1_2425428_2425677_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|258aa|down_9|NZ_CP012460.1_2425905_2426679_-	NA
GCF_001721065.1_ASM172106v1	NZ_CP012460	Enterococcus faecium strain ISMMS_VRE_7 chromosome, complete genome	2	2419727-2419913	1	PILER-CR	no	RT	csa3,cas14j,cas3,DinG,DEDDh,cas2,RT	Unclear	GAACAGTAGATGTACGAGAAAA	22	3	3	2419749-2419783|2419806-2419834|2419857-2419891	NZ_CP012460.1_2419641-2419675|NZ_CP012460.1_2419698-2419726|NZ_CP012460.1_2419641-2419675	NA	3	3	Orphan	csa3,cas14j,cas3,DinG,DEDDh,cas2,RT,WYL	NA|109aa|up_2|NZ_CP012460.1_2415789_2416116_+,NA|73aa|up_0|NZ_CP012460.1_2417315_2417534_+,NA|63aa|down_0|NZ_CP012460.1_2420179_2420368_+,NA|204aa|down_1|NZ_CP012460.1_2420379_2420991_+,NA|101aa|down_3|NZ_CP012460.1_2422582_2422885_+,NA|116aa|down_4|NZ_CP012460.1_2422877_2423225_+,NA|49aa|down_6|NZ_CP012460.1_2424732_2424879_+,NA|105aa|down_7|NZ_CP012460.1_2425015_2425330_+,NA|258aa|down_9|NZ_CP012460.1_2425905_2426679_-	NA|513aa|up_9|NZ_CP012460.1_2410048_2411587_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|156aa|up_8|NZ_CP012460.1_2411706_2412174_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|148aa|up_7|NZ_CP012460.1_2412692_2413136_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_6|NZ_CP012460.1_2413151_2413544_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|389aa|up_5|NZ_CP012460.1_2413632_2414799_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|217aa|up_4|NZ_CP012460.1_2414853_2415504_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|68aa|up_3|NZ_CP012460.1_2415578_2415782_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|109aa|up_2|NZ_CP012460.1_2415789_2416116_+	NA	NA|348aa|up_1|NZ_CP012460.1_2416270_2417314_+	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|73aa|up_0|NZ_CP012460.1_2417315_2417534_+	NA	NA|63aa|down_0|NZ_CP012460.1_2420179_2420368_+	NA	NA|204aa|down_1|NZ_CP012460.1_2420379_2420991_+	NA	NA|464aa|down_2|NZ_CP012460.1_2420975_2422367_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|101aa|down_3|NZ_CP012460.1_2422582_2422885_+	NA	NA|116aa|down_4|NZ_CP012460.1_2422877_2423225_+	NA	NA|425aa|down_5|NZ_CP012460.1_2423284_2424559_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|49aa|down_6|NZ_CP012460.1_2424732_2424879_+	NA	NA|105aa|down_7|NZ_CP012460.1_2425015_2425330_+	NA	NA|83aa|down_8|NZ_CP012460.1_2425428_2425677_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|258aa|down_9|NZ_CP012460.1_2425905_2426679_-	NA
GCF_001721065.1_ASM172106v1	NZ_CP012460	Enterococcus faecium strain ISMMS_VRE_7 chromosome, complete genome	3	2827605-2827714	2	CRISPRCasFinder	no		csa3,cas14j,cas3,DinG,DEDDh,cas2,RT	Orphan	TGATGAACAATACTGGTTGAGCAAAG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,cas3,DinG,DEDDh,cas2,RT,WYL	NA,NA	NA|215aa|up_9|NZ_CP012460.1_2820220_2820865_-	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|51aa|up_8|NZ_CP012460.1_2821026_2821179_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|57aa|up_7|NZ_CP012460.1_2821202_2821373_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|182aa|up_6|NZ_CP012460.1_2821473_2822019_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|302aa|up_5|NZ_CP012460.1_2822077_2822983_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|340aa|up_4|NZ_CP012460.1_2823155_2824175_+	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|291aa|up_3|NZ_CP012460.1_2824265_2825138_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|223aa|up_2|NZ_CP012460.1_2825150_2825819_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|141aa|up_1|NZ_CP012460.1_2826161_2826584_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|230aa|up_0|NZ_CP012460.1_2826687_2827377_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|168aa|down_0|NZ_CP012460.1_2827786_2828290_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|123aa|down_1|NZ_CP012460.1_2828342_2828711_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|230aa|down_2|NZ_CP012460.1_2828816_2829506_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|401aa|down_3|NZ_CP012460.1_2829587_2830790_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|511aa|down_4|NZ_CP012460.1_2830980_2832513_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|234aa|down_5|NZ_CP012460.1_2832746_2833448_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|238aa|down_6|NZ_CP012460.1_2833701_2834415_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|380aa|down_7|NZ_CP012460.1_2834723_2835863_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|322aa|down_8|NZ_CP012460.1_2835951_2836917_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|720aa|down_9|NZ_CP012460.1_2836966_2839126_-	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated
GCF_001721065.1_ASM172106v1	NZ_CP012461	Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence	1	192047-192175	1	CRISPRCasFinder	no	cas14j	DEDDh,cas14j	Unclear	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	TypeV	csa3,cas14j,cas3,DinG,DEDDh,cas2,RT,WYL	NA|78aa|up_9|NZ_CP012461.1_179007_179241_-,NA|50aa|up_6|NZ_CP012461.1_181362_181512_-,NA|791aa|up_3|NZ_CP012461.1_185177_187550_-,NA|111aa|up_0|NZ_CP012461.1_190406_190739_-,NA|65aa|down_0|NZ_CP012461.1_193954_194149_+,NA|63aa|down_6|NZ_CP012461.1_198655_198844_+	NA|78aa|up_9|NZ_CP012461.1_179007_179241_-	NA	NA|300aa|up_8|NZ_CP012461.1_179773_180673_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|199aa|up_7|NZ_CP012461.1_180685_181282_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|50aa|up_6|NZ_CP012461.1_181362_181512_-	NA	NA|670aa|up_5|NZ_CP012461.1_181627_183637_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|490aa|up_4|NZ_CP012461.1_183647_185117_-	pfam13155, Toprim_2, Toprim-like	NA|791aa|up_3|NZ_CP012461.1_185177_187550_-	NA	NA|417aa|up_2|NZ_CP012461.1_187959_189210_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|114aa|up_1|NZ_CP012461.1_189446_189788_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NZ_CP012461.1_190406_190739_-	NA	NA|65aa|down_0|NZ_CP012461.1_193954_194149_+	NA	cas14j|383aa|down_1|NZ_CP012461.1_194854_196003_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|135aa|down_2|NZ_CP012461.1_196019_196424_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|85aa|down_3|NZ_CP012461.1_196782_197037_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_4|NZ_CP012461.1_197037_197355_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|227aa|down_5|NZ_CP012461.1_197830_198511_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|63aa|down_6|NZ_CP012461.1_198655_198844_+	NA	NA|227aa|down_7|NZ_CP012461.1_198956_199637_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|NA	NA	NA|NA	NA
