assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001721125.1_ASM172112v1	NZ_CP012693	Escherichia coli strain FORC_028 chromosome, complete genome	1	685441-685558	1	CRISPRCasFinder	no		WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP012693.1_685631_685796_-	NA|115aa|up_9|NZ_CP012693.1_673162_673507_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP012693.1_673695_674634_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP012693.1_674732_675722_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP012693.1_675743_677075_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP012693.1_677100_678309_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP012693.1_678342_680637_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP012693.1_680650_681040_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP012693.1_681111_682476_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP012693.1_682750_684082_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP012693.1_684109_685420_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP012693.1_685631_685796_-	NA	NA|234aa|down_1|NZ_CP012693.1_685818_686520_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP012693.1_686624_687521_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP012693.1_687571_687928_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP012693.1_688169_688535_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP012693.1_688827_689814_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_6|NZ_CP012693.1_689883_690276_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP012693.1_690461_690761_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP012693.1_690750_691155_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP012693.1_691157_691463_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_001721125.1_ASM172112v1	NZ_CP012693	Escherichia coli strain FORC_028 chromosome, complete genome	2	1094704-1095281	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GNGTTCCCCGCGCCAGCGGGGATAAACCG,TCCCCGCGCCAGCGGGGATAAACCG	29,29,25	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP012693.1_1093413_1093554_-,NA	NA|434aa|up_9|NZ_CP012693.1_1084110_1085412_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP012693.1_1085459_1087694_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP012693.1_1087771_1088020_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP012693.1_1088019_1088355_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP012693.1_1088425_1089217_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP012693.1_1089444_1091082_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP012693.1_1091169_1092468_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP012693.1_1092527_1093400_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP012693.1_1093413_1093554_-	NA	NA|224aa|up_0|NZ_CP012693.1_1093692_1094364_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP012693.1_1095919_1097398_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP012693.1_1097424_1098702_-	cd06174, MFS, Major Facilitator Superfamily	NA|485aa|down_2|NZ_CP012693.1_1099874_1101329_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_CP012693.1_1101350_1102760_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP012693.1_1102737_1103517_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_CP012693.1_1103513_1104374_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP012693.1_1104521_1105097_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP012693.1_1105113_1105374_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP012693.1_1105364_1106636_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_CP012693.1_1106713_1107076_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_001721125.1_ASM172112v1	NZ_CP012693	Escherichia coli strain FORC_028 chromosome, complete genome	3	1120983-1121438	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP012693.1_1110979_1111714_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP012693.1_1111978_1112131_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP012693.1_1112324_1115024_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP012693.1_1115121_1116684_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|163aa|up_5|NZ_CP012693.1_1116680_1117169_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP012693.1_1117231_1118287_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP012693.1_1118297_1119044_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP012693.1_1119025_1119676_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP012693.1_1119672_1120593_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP012693.1_1120592_1120886_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP012693.1_1121519_1122557_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP012693.1_1122808_1123717_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP012693.1_1123718_1125146_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP012693.1_1125145_1125751_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP012693.1_1125800_1126124_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP012693.1_1126317_1126629_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP012693.1_1126647_1127358_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP012693.1_1127357_1127837_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP012693.1_1127833_1128883_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP012693.1_1128863_1129625_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001721125.1_ASM172112v1	NZ_CP012693	Escherichia coli strain FORC_028 chromosome, complete genome	4	3869290-3869434	4	CRISPRCasFinder	no		WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	NA|186aa|up_9|NZ_CP012693.1_3863513_3864071_+,NA|206aa|up_7|NZ_CP012693.1_3864626_3865244_+,NA|56aa|up_4|NZ_CP012693.1_3865892_3866060_+,NA|115aa|up_3|NZ_CP012693.1_3866088_3866433_+,NA	NA|186aa|up_9|NZ_CP012693.1_3863513_3864071_+	NA	NA|186aa|up_8|NZ_CP012693.1_3864067_3864625_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|206aa|up_7|NZ_CP012693.1_3864626_3865244_+	NA	NA|101aa|up_6|NZ_CP012693.1_3865240_3865543_+	TIGR03655, hypothetical_protein_VT2-Sap32, restriction alleviation protein, Lar family	NA|95aa|up_5|NZ_CP012693.1_3865535_3865820_+	smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain	NA|56aa|up_4|NZ_CP012693.1_3865892_3866060_+	NA	NA|115aa|up_3|NZ_CP012693.1_3866088_3866433_+	NA	NA|73aa|up_2|NZ_CP012693.1_3866539_3866758_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP012693.1_3866735_3867806_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP012693.1_3867940_3869224_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP012693.1_3869457_3871719_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP012693.1_3871901_3873335_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP012693.1_3873410_3874463_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP012693.1_3874646_3875600_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP012693.1_3875640_3876636_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP012693.1_3876790_3877609_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP012693.1_3877609_3878668_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP012693.1_3878670_3879360_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP012693.1_3879359_3880133_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP012693.1_3880298_3880448_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001721125.1_ASM172112v1	NZ_CP012693	Escherichia coli strain FORC_028 chromosome, complete genome	5	4793571-4793703	3	PILER-CR	no		WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,PrimPol,c2c9_V-U4,DinG	NA|156aa|up_9|NZ_CP012693.1_4784812_4785280_+,NA	NA|156aa|up_9|NZ_CP012693.1_4784812_4785280_+	NA	NA|60aa|up_8|NZ_CP012693.1_4785378_4785558_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP012693.1_4785578_4786058_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP012693.1_4786249_4788112_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP012693.1_4788104_4788635_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP012693.1_4788742_4790074_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP012693.1_4790132_4790420_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP012693.1_4790416_4791703_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP012693.1_4791753_4792695_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP012693.1_4792709_4793480_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP012693.1_4793953_4795468_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP012693.1_4795498_4796641_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP012693.1_4796769_4797987_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP012693.1_4798060_4799614_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP012693.1_4799722_4800508_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP012693.1_4800513_4801104_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP012693.1_4801189_4801585_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP012693.1_4801845_4805067_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP012693.1_4805084_4806233_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP012693.1_4806688_4807510_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
