assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001721525.1_ASM172152v1	NZ_CP015834	Escherichia coli strain MS6198 chromosome, complete genome	1	1016071-1016218	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j	NA|81aa|up_9|NZ_CP015834.1_1006463_1006706_+,NA|74aa|up_8|NZ_CP015834.1_1006678_1006900_+,NA|78aa|up_7|NZ_CP015834.1_1006901_1007135_+,NA|65aa|up_4|NZ_CP015834.1_1009752_1009947_+,NA|94aa|up_2|NZ_CP015834.1_1012091_1012373_+,NA	NA|81aa|up_9|NZ_CP015834.1_1006463_1006706_+	NA	NA|74aa|up_8|NZ_CP015834.1_1006678_1006900_+	NA	NA|78aa|up_7|NZ_CP015834.1_1006901_1007135_+	NA	NA|100aa|up_6|NZ_CP015834.1_1007140_1007440_+	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|470aa|up_5|NZ_CP015834.1_1007436_1008846_+	pfam13481, AAA_25, AAA domain	NA|65aa|up_4|NZ_CP015834.1_1009752_1009947_+	NA	NA|630aa|up_3|NZ_CP015834.1_1009943_1011833_+	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|94aa|up_2|NZ_CP015834.1_1012091_1012373_+	NA	NA|107aa|up_1|NZ_CP015834.1_1013228_1013549_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP015834.1_1013579_1015856_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP015834.1_1016603_1016822_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP015834.1_1017106_1017811_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP015834.1_1017852_1019574_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP015834.1_1019574_1021341_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP015834.1_1021463_1022429_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP015834.1_1022972_1023467_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1357aa|down_6|NZ_CP015834.1_1023601_1027672_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP015834.1_1027830_1028442_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP015834.1_1028452_1029796_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP015834.1_1029886_1031179_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_001721525.1_ASM172152v1	NZ_CP015834	Escherichia coli strain MS6198 chromosome, complete genome	2	3073624-3074507	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,13,12	14	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j	NA,NA	NA|254aa|up_9|NZ_CP015834.1_3065497_3066259_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015834.1_3066239_3067289_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015834.1_3067285_3067765_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015834.1_3067764_3068475_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015834.1_3068493_3068805_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015834.1_3068998_3069322_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015834.1_3069371_3069977_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015834.1_3069976_3071404_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015834.1_3071405_3072314_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015834.1_3072565_3073603_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP015834.1_3074612_3074897_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP015834.1_3074898_3075816_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP015834.1_3075831_3076431_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP015834.1_3076417_3077092_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP015834.1_3077094_3078186_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP015834.1_3078198_3078681_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP015834.1_3078673_3080182_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP015834.1_3080596_3083263_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP015834.1_3083621_3084356_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP015834.1_3084429_3086142_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001721525.1_ASM172152v1	NZ_CP015834	Escherichia coli strain MS6198 chromosome, complete genome	3	3100054-3101366	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	2	2	3100450-3100481|3100450-3100482	NZ_CP015834.1_3121198-3121167|NZ_CP015834.1_3121198-3121166	I-E:I-E:I-E	21,21,21	21	Unclear	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j	NA,NA	NA|424aa|up_9|NZ_CP015834.1_3088699_3089971_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP015834.1_3089961_3090222_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP015834.1_3090238_3090814_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP015834.1_3090960_3091821_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP015834.1_3091817_3092597_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP015834.1_3092574_3093984_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP015834.1_3094005_3095460_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015834.1_3095529_3096315_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015834.1_3096633_3097911_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015834.1_3097937_3099416_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015834.1_3101705_3102377_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP015834.1_3102670_3103543_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP015834.1_3103602_3104901_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP015834.1_3104987_3106625_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP015834.1_3106852_3107644_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP015834.1_3107715_3108051_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP015834.1_3108050_3108299_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP015834.1_3108376_3110611_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP015834.1_3110658_3111960_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP015834.1_3112016_3114773_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_001721525.1_ASM172152v1	NZ_CP015834	Escherichia coli strain MS6198 chromosome, complete genome	4	4973747-4973881	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Orphan	GTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCG	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j	NA|325aa|up_8|NZ_CP015834.1_4965115_4966090_+,NA|118aa|up_7|NZ_CP015834.1_4966105_4966459_+,NA|77aa|up_6|NZ_CP015834.1_4966445_4966676_+,NA	NA|151aa|up_9|NZ_CP015834.1_4964540_4964993_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|325aa|up_8|NZ_CP015834.1_4965115_4966090_+	NA	NA|118aa|up_7|NZ_CP015834.1_4966105_4966459_+	NA	NA|77aa|up_6|NZ_CP015834.1_4966445_4966676_+	NA	NA|335aa|up_5|NZ_CP015834.1_4966776_4967781_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP015834.1_4967942_4968359_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP015834.1_4968404_4968908_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP015834.1_4969100_4970297_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP015834.1_4970352_4973208_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP015834.1_4973207_4973651_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP015834.1_4973906_4975418_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP015834.1_4975684_4976785_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP015834.1_4976784_4977867_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP015834.1_4978027_4979530_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP015834.1_4979607_4980606_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP015834.1_4980672_4981992_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP015834.1_4982053_4982818_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP015834.1_4982841_4983873_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP015834.1_4984089_4984653_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP015834.1_4984656_4985676_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_001721525.1_ASM172152v1	NZ_CP015834	Escherichia coli strain MS6198 chromosome, complete genome	5	5142427-5142591	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK	Orphan	CTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j	NA,NA	NA|764aa|up_9|NZ_CP015834.1_5133054_5135346_-	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase	NA|165aa|up_8|NZ_CP015834.1_5135599_5136094_-	PRK11667, PRK11667, hypothetical protein; Provisional	NA|246aa|up_7|NZ_CP015834.1_5136142_5136880_-	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|180aa|up_6|NZ_CP015834.1_5136882_5137422_-	PRK02854, PRK02854, primosomal protein DnaT	NA|158aa|up_5|NZ_CP015834.1_5137528_5138002_-	PRK09917, PRK09917, threonine/serine exporter	NA|257aa|up_4|NZ_CP015834.1_5137992_5138763_-	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|242aa|up_3|NZ_CP015834.1_5139381_5140107_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|226aa|up_2|NZ_CP015834.1_5140064_5140742_+	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional	NA|263aa|up_1|NZ_CP015834.1_5140779_5141568_-	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional	NA|79aa|up_0|NZ_CP015834.1_5141708_5141945_+	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|344aa|down_0|NZ_CP015834.1_5142684_5143716_-	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|138aa|down_1|NZ_CP015834.1_5143818_5144232_+	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|149aa|down_2|NZ_CP015834.1_5144200_5144647_+	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|226aa|down_3|NZ_CP015834.1_5144661_5145339_+	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|530aa|down_4|NZ_CP015834.1_5145429_5147019_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|202aa|down_5|NZ_CP015834.1_5147411_5148017_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|down_6|NZ_CP015834.1_5148145_5148307_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|358aa|down_7|NZ_CP015834.1_5148427_5149501_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|down_8|NZ_CP015834.1_5149497_5150280_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|288aa|down_9|NZ_CP015834.1_5150498_5151362_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family
