assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001741865.1_ASM174186v1	NZ_CP017147	Bosea vaviloviae strain Vaf18 chromosome, complete genome	1	2395635-2395713	1	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	TGGCGAATAGCGAGGTAAGGCTTCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3	NA,NA|49aa|down_2|NZ_CP017147.1_2398580_2398727_-,NA|104aa|down_9|NZ_CP017147.1_2405592_2405904_-	NA|363aa|up_9|NZ_CP017147.1_2385977_2387066_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|400aa|up_8|NZ_CP017147.1_2387040_2388240_-	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|204aa|up_7|NZ_CP017147.1_2388578_2389190_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|362aa|up_6|NZ_CP017147.1_2389381_2390467_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|163aa|up_5|NZ_CP017147.1_2390725_2391214_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|295aa|up_4|NZ_CP017147.1_2391350_2392235_-	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|102aa|up_3|NZ_CP017147.1_2392375_2392681_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|96aa|up_2|NZ_CP017147.1_2392677_2392965_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|335aa|up_1|NZ_CP017147.1_2393002_2394007_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|477aa|up_0|NZ_CP017147.1_2394020_2395451_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|269aa|down_0|NZ_CP017147.1_2395787_2396594_-	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins	NA|547aa|down_1|NZ_CP017147.1_2396848_2398489_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|49aa|down_2|NZ_CP017147.1_2398580_2398727_-	NA	NA|592aa|down_3|NZ_CP017147.1_2398965_2400741_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|336aa|down_4|NZ_CP017147.1_2400910_2401918_+	PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|441aa|down_5|NZ_CP017147.1_2401934_2403257_-	PRK15075, PRK15075, tricarballylate/proton symporter TcuC	NA|343aa|down_6|NZ_CP017147.1_2403404_2404433_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|75aa|down_7|NZ_CP017147.1_2404599_2404824_+	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|261aa|down_8|NZ_CP017147.1_2404816_2405599_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|104aa|down_9|NZ_CP017147.1_2405592_2405904_-	NA
GCF_001741865.1_ASM174186v1	NZ_CP017147	Bosea vaviloviae strain Vaf18 chromosome, complete genome	2	2746311-2746397	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	TCCACTTCGCTCGAAAACGCTCTA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3	NA,NA|234aa|down_4|NZ_CP017147.1_2751193_2751895_+,NA|129aa|down_5|NZ_CP017147.1_2752013_2752400_-	NA|410aa|up_9|NZ_CP017147.1_2734790_2736020_-	cd17352, MFS_MCT_SLC16, Monocarboxylate transporter (MCT) family of the Major Facilitator Superfamily of transporters	NA|469aa|up_8|NZ_CP017147.1_2736021_2737428_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|297aa|up_7|NZ_CP017147.1_2737643_2738534_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|279aa|up_6|NZ_CP017147.1_2738699_2739536_+	pfam14347, DUF4399, Domain of unknown function (DUF4399)	NA|365aa|up_5|NZ_CP017147.1_2739710_2740805_+	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|347aa|up_4|NZ_CP017147.1_2741213_2742254_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|430aa|up_3|NZ_CP017147.1_2742305_2743595_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|293aa|up_2|NZ_CP017147.1_2743599_2744478_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|267aa|up_1|NZ_CP017147.1_2744540_2745341_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|279aa|up_0|NZ_CP017147.1_2745374_2746211_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|275aa|down_0|NZ_CP017147.1_2746412_2747237_+	cd01517, PAP_phosphatase, PAP-phosphatase_like domains	NA|283aa|down_1|NZ_CP017147.1_2747445_2748294_+	COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]	NA|100aa|down_2|NZ_CP017147.1_2749004_2749304_+	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|399aa|down_3|NZ_CP017147.1_2749344_2750541_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|234aa|down_4|NZ_CP017147.1_2751193_2751895_+	NA	NA|129aa|down_5|NZ_CP017147.1_2752013_2752400_-	NA	NA|538aa|down_6|NZ_CP017147.1_2752580_2754194_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|461aa|down_7|NZ_CP017147.1_2754641_2756024_+	PRK09104, PRK09104, hypothetical protein; Validated	NA|194aa|down_8|NZ_CP017147.1_2756020_2756602_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|333aa|down_9|NZ_CP017147.1_2756668_2757667_+	pfam12889, DUF3829, Protein of unknown function (DUF3829)
GCF_001741865.1_ASM174186v1	NZ_CP017147	Bosea vaviloviae strain Vaf18 chromosome, complete genome	3	2986160-2986254	3	CRISPRCasFinder	no	csa3	csa3,DEDDh,WYL,cas3	Type I-A	GCGAGTAGCGAATGGTGAGAGTGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3	NA,NA|81aa|down_8|NZ_CP017147.1_2995534_2995777_-	NA|152aa|up_9|NZ_CP017147.1_2974754_2975210_+	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	NA|250aa|up_8|NZ_CP017147.1_2975316_2976066_+	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|237aa|up_7|NZ_CP017147.1_2976481_2977192_+	pfam07237, DUF1428, Protein of unknown function (DUF1428)	NA|409aa|up_6|NZ_CP017147.1_2977574_2978801_-	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]	NA|278aa|up_5|NZ_CP017147.1_2979167_2980001_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|164aa|up_4|NZ_CP017147.1_2980044_2980536_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|297aa|up_3|NZ_CP017147.1_2980892_2981783_-	PRK00235, cobS, cobalamin synthase; Reviewed	NA|344aa|up_2|NZ_CP017147.1_2981912_2982944_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|303aa|up_1|NZ_CP017147.1_2983121_2984030_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|614aa|up_0|NZ_CP017147.1_2984305_2986147_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|506aa|down_0|NZ_CP017147.1_2986309_2987827_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|184aa|down_1|NZ_CP017147.1_2987913_2988465_+	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]	NA|279aa|down_2|NZ_CP017147.1_2989054_2989891_+	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|675aa|down_3|NZ_CP017147.1_2989985_2992010_+	PRK04350, PRK04350, thymidine phosphorylase; Provisional	NA|330aa|down_4|NZ_CP017147.1_2992105_2993095_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|284aa|down_5|NZ_CP017147.1_2993091_2993943_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|250aa|down_6|NZ_CP017147.1_2993939_2994689_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|248aa|down_7|NZ_CP017147.1_2994742_2995486_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|81aa|down_8|NZ_CP017147.1_2995534_2995777_-	NA	NA|273aa|down_9|NZ_CP017147.1_2995773_2996592_-	pfam16227, DUF4886, Domain of unknown function (DUF4886)
GCF_001741865.1_ASM174186v1	NZ_CP017147	Bosea vaviloviae strain Vaf18 chromosome, complete genome	4	3092738-3092902	1	PILER-CR	no		csa3,DEDDh,WYL,cas3	Orphan	CGCCACCGCCACCGCCGCCGCCGCCGCCGG	30	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,WYL,cas3	NA,NA	NA|323aa|up_9|NZ_CP017147.1_3078068_3079037_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_8|NZ_CP017147.1_3079033_3079969_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|247aa|up_7|NZ_CP017147.1_3080126_3080867_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|324aa|up_6|NZ_CP017147.1_3081373_3082345_-	cd08433, PBP2_Nac, The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold	NA|187aa|up_5|NZ_CP017147.1_3082445_3083006_+	COG4032, COG4032, Predicted thiamine-pyrophosphate-binding protein [General function prediction only]	NA|196aa|up_4|NZ_CP017147.1_3083026_3083614_+	cd03372, TPP_ComE, Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)	NA|271aa|up_3|NZ_CP017147.1_3084058_3084871_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|149aa|up_2|NZ_CP017147.1_3084867_3085314_+	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|93aa|up_1|NZ_CP017147.1_3085527_3085806_+	pfam08681, DUF1778, Protein of unknown function (DUF1778)	NA|176aa|up_0|NZ_CP017147.1_3085802_3086330_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|461aa|down_0|NZ_CP017147.1_3093398_3094781_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|358aa|down_1|NZ_CP017147.1_3094980_3096054_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|243aa|down_2|NZ_CP017147.1_3096245_3096974_-	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|255aa|down_3|NZ_CP017147.1_3097160_3097925_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|384aa|down_4|NZ_CP017147.1_3098091_3099243_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|385aa|down_5|NZ_CP017147.1_3099814_3100969_+	pfam00665, rve, Integrase core domain	NA|349aa|down_6|NZ_CP017147.1_3104525_3105572_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|down_7|NZ_CP017147.1_3105842_3106160_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|97aa|down_8|NZ_CP017147.1_3106197_3106488_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|225aa|down_9|NZ_CP017147.1_3106525_3107200_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001741865.1_ASM174186v1	NZ_CP017147	Bosea vaviloviae strain Vaf18 chromosome, complete genome	5	3443849-3445006	1	CRT	no		csa3,DEDDh,WYL,cas3	Orphan	GGNGGNCANGGNGGCGGC	18	0	0	NA	NA	NA	16	16	Orphan	csa3,DEDDh,WYL,cas3	NA|106aa|up_6|NZ_CP017147.1_3439475_3439793_+,NA|87aa|up_5|NZ_CP017147.1_3439946_3440207_+,NA|121aa|up_3|NZ_CP017147.1_3440833_3441196_-,NA|130aa|up_2|NZ_CP017147.1_3441990_3442380_+,NA|65aa|up_0|NZ_CP017147.1_3442717_3442912_-,NA	NA|1152aa|up_9|NZ_CP017147.1_3434189_3437645_+	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein	NA|189aa|up_8|NZ_CP017147.1_3437825_3438392_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|147aa|up_7|NZ_CP017147.1_3438506_3438947_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|106aa|up_6|NZ_CP017147.1_3439475_3439793_+	NA	NA|87aa|up_5|NZ_CP017147.1_3439946_3440207_+	NA	NA|96aa|up_4|NZ_CP017147.1_3440390_3440678_-	COG3514, COG3514, Uncharacterized protein conserved in bacteria [Function unknown]	NA|121aa|up_3|NZ_CP017147.1_3440833_3441196_-	NA	NA|130aa|up_2|NZ_CP017147.1_3441990_3442380_+	NA	NA|63aa|up_1|NZ_CP017147.1_3442526_3442715_-	PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional	NA|65aa|up_0|NZ_CP017147.1_3442717_3442912_-	NA	NA|209aa|down_0|NZ_CP017147.1_3445189_3445816_-	pfam06035, Peptidase_C93, Bacterial transglutaminase-like cysteine proteinase BTLCP	NA|303aa|down_1|NZ_CP017147.1_3446234_3447143_-	cd08439, PBP2_LrhA_like, The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold	NA|437aa|down_2|NZ_CP017147.1_3447241_3448552_+	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|249aa|down_3|NZ_CP017147.1_3448763_3449510_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|558aa|down_4|NZ_CP017147.1_3449511_3451185_-	cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|221aa|down_5|NZ_CP017147.1_3451779_3452442_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|341aa|down_6|NZ_CP017147.1_3452865_3453888_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|297aa|down_7|NZ_CP017147.1_3454049_3454940_+	cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates	NA|249aa|down_8|NZ_CP017147.1_3454950_3455697_+	cd05233, SDR_c, classical (c) SDRs	NA|303aa|down_9|NZ_CP017147.1_3455716_3456625_+	pfam05853, BKACE, beta-keto acid cleavage enzyme
