The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	771669	812871	5852822	transposase	Leptospira_phage(66.67%)	30	NA	NA
WP_072501182.1|771669_771996_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_142305298.1|773051_773453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173662743.1|773530_774244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_069953648.1|774246_775116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_072501184.1|775122_776340_+	MCE family protein	NA	NA	NA	NA	NA
WP_069953649.1|776336_777380_+	MCE family protein	NA	NA	NA	NA	NA
WP_072501485.1|777376_778942_+	MCE family protein	NA	NA	NA	NA	NA
WP_072501185.1|778938_780453_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_072501186.1|780455_781583_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_072501187.1|781588_783145_+	MCE family protein	NA	NA	NA	NA	NA
WP_142305297.1|783457_783805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173662744.1|786544_787664_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	2.6e-31
WP_069953651.1|788852_789152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065122889.1|789483_790545_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_069953652.1|791123_791705_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_065122888.1|791991_793557_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_173662727.1|793602_794493_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_162494282.1|796905_797043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069953652.1|797206_797788_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_069953928.1|799721_800423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_142305251.1|800706_801021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065123596.1|803580_804000_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_095763959.1|804634_805231_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_065123598.1|805532_805754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065123599.1|806076_806376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065123600.1|806413_807055_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_072501487.1|807695_809000_+	MCE family protein	NA	NA	NA	NA	NA
WP_065121590.1|809377_810016_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_173662745.1|810327_811447_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	4.4e-31
WP_083533351.1|811557_812871_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	30.3	5.4e-28
>prophage 2
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	829540	875177	5852822	integrase,transposase	Leptospira_phage(80.0%)	26	831211:831270	875197:876439
WP_173662746.1|829540_830660_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	2.6e-31
831211:831270	attL	GCTGGCCTGACCCCGTTTGGTTGATCCATGGCTTATGAGAGTCTTGCAGCCCACGACGTG	NA	NA	NA	NA
WP_173662747.1|831289_832409_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	4.4e-31
WP_145929546.1|832449_832752_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_145929520.1|836483_836687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069953659.1|836641_837586_+	R2-like ligand-binding oxidase	NA	NA	NA	NA	NA
WP_069953660.1|837785_838208_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_072501192.1|838207_839350_+	thiolase family protein	NA	NA	NA	NA	NA
WP_069953661.1|839416_840310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_072501193.1|840340_841960_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.1	1.1e-30
WP_050790029.1|842207_843329_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_069953664.1|843452_844505_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_069953665.1|845002_846229_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_042909842.1|848092_849316_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909843.1|851773_852061_+	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_069953666.1|852339_854514_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_072501194.1|858727_859564_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_072501195.1|859588_860512_+	reductase	NA	NA	NA	NA	NA
WP_083533353.1|860508_862089_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_069953931.1|862235_863759_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_069953667.1|863755_864724_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_158514583.1|864935_865793_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_173662748.1|865897_867018_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	33.7	1.7e-30
WP_162494283.1|867126_867297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065122889.1|868355_869417_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_065122890.1|869849_870491_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_173662747.1|874056_875177_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	4.4e-31
875197:876439	attR	CACGTCGTGGGCTGCAAGACTCTCATAAGCCATGGATCAACCAAACGGGGTCAGGCCAGCCGGGTCGTCCCAGTCGATCACGGGTTTGCCCGCATTGTCATAGTCGTGGGCGCTGCAGTGGTGGGCCACCACGCCAGCCGCGCCTGGCACCTCACGGCGCACCCGGCGGATTGCCCCGATCAGCTGGTCACGGTGTCTTGGGTGGCCACCGCGTCCTCAAGCACGGTGGAATCCAACGCCCGACGCGTCTTACCGGCCAACACCCCCGTCGCTGCCACCACGGCCTTGACCGCCTCAAAGATCCGGTTAGGCCGATCCGAGGCCGCCAACCGGCGCCGCCAGTACGTCAGCGTGGTGGCATGAAACGCCCCCGCACTGACCGGCAACCCGCAGGCCGCTTTCCAGCGCAAATCAAACATGACGGCATCCACCGTCTCGCTATCAGAAAGCCCGTGTAAGGCCTGCAACGTGATCACCGTGGCCATCACGTCGGCTGGCACACTGGGCCGCCCCGGGCCCGTCGGGAACAGATCGGCGAACATCTCGTCTGGGAACAACGCTTGCCGATGCCCGGCCAAGAAAGCAAATACACTGCCCGCCTTCACAAGATGCCCAGCAACCGCCTCCGCATCCAGCAATTCCCGCTGACTATCCGAATGACCTTGCACCCCAAAATCATCGCCGACCACGCCGCCAACAACCCAACCGCCACGCCGATTTATTCAGTGCACTCATATCGCTAGTCTTAACTATAATGCTCCACGGCGACGCTCCGATATAGAGCCTCGCCTGTCCGGTCTCATCAAGGTATGAAACGGCGATCTCGGCATTACCCCGGCTGAGTACCTCGTAAGTGGATGTCCTTGGGTTTGCCTAACATGCGCGCCATGTTGGCCAATGGCGACTGTGTCGGTTCGGCCGAGTGCTCCACTGCCACATCTTTTTGGGGTAAGTACATAGGATCCCGCAGCGGCCCAGAGGCCAATGATCAACACCCAGACCCACCCGTGCCGGCGCACCAAAAAATCGGTTGACCAATTCGACACCAGTGAGCGGACCGCACGATCAGTACTTTCACTTCACGGCGTCCGACGCCGCGGCGTTTTGGCGGCCGCCCGCGTATCCACTAAAAAAGTTCTCACCTCCAAGCCCTATTAACCGTATCCCCGGTAATTCACAAGTCGTTTACTCCGCGGGCGAGTTAAACTCGAATTGAGGAACCTAAATGTTAACTTTTGGCGTC	NA	NA	NA	NA
>prophage 3
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	915493	960507	5852822	integrase,transposase	Leptospira_phage(50.0%)	34	921748:921766	965779:965797
WP_069953690.1|915493_916903_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_069953691.1|916899_917712_+	ExeA family protein	NA	NA	NA	NA	NA
WP_095763957.1|918252_919872_+	fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	26.1	4.8e-26
WP_065123242.1|919910_921056_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_065123243.1|921378_921582_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
921748:921766	attL	CGGTGGCCAGGCCGGTCAG	NA	NA	NA	NA
WP_173662751.1|922006_923126_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	2.6e-31
WP_065122879.1|923195_925109_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A221SAN4	Ralstonia_phage	25.1	3.8e-06
WP_158514584.1|926241_926493_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_095763937.1|926532_927207_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_065122891.1|927648_928071_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_072501491.1|928231_929107_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_065122881.1|930742_931168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065122882.1|931291_932305_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_065122883.1|932309_932510_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_072501203.1|932487_932907_-|transposase	transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	52.3	1.5e-11
WP_065122884.1|933950_934163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065122885.1|935764_938698_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_065122886.1|938694_939105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065122887.1|939193_940057_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_173662728.1|940591_941479_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_072501204.1|941548_942418_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_142305296.1|943312_943498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173662745.1|943819_944940_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	4.4e-31
WP_142305312.1|945506_945698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142305313.1|945704_946283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173662752.1|946338_947458_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.1	4.4e-31
WP_172832467.1|947507_947789_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_065119800.1|947861_949244_-	recombinase XerD	NA	NA	NA	NA	NA
WP_065119801.1|949320_949668_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_065119802.1|949903_950344_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_095763958.1|950333_952529_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_072501205.1|953568_954087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069953696.1|959053_959401_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_173662729.1|959397_960507_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
965779:965797	attR	CTGACCGGCCTGGCCACCG	NA	NA	NA	NA
>prophage 4
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	1955104	2013996	5852822	integrase,transposase	Tupanvirus(66.67%)	30	1967401:1967460	2017495:2021052
WP_158514585.1|1955104_1955983_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
WP_069953652.1|1956201_1956783_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_069953759.1|1957039_1959208_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_080691160.1|1959213_1960383_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_158514586.1|1960476_1962999_+	TniQ family protein	NA	NA	NA	NA	NA
WP_069953761.1|1966435_1967248_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.1	3.8e-32
1967401:1967460	attL	CGCCCGGAATCGGCGAAAGGCCACCGCCCGGTGCAAAGCGGCGACCAGGGCGTCGGTGCC	NA	NA	NA	NA
WP_042909843.1|1968212_1968500_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_046182709.1|1968496_1970962_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|1970958_1972182_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_087139680.1|1973108_1974379_-|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	41.7	3.7e-50
WP_157679854.1|1974650_1976450_-	TniQ family protein	NA	NA	NA	NA	NA
WP_042911243.1|1976627_1976888_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042911244.1|1977308_1977896_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383138.1|1978214_1978646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142383139.1|1978676_1979054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080691161.1|1979016_1979892_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_072501247.1|1980353_1983353_-	nocobactin polyketide synthase NbtC	NA	NA	NA	NA	NA
WP_042911247.1|1983349_1984651_-	polyketide synthase	NA	NA	NA	NA	NA
WP_042911248.1|1984647_1985382_-	thioesterase	NA	NA	NA	NA	NA
WP_087139839.1|1985378_1985852_-	acetyltransferase	NA	NA	NA	NA	NA
WP_042911250.1|1986037_1991026_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.7	1.5e-94
WP_087139684.1|1991007_1995486_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	3.1e-35
WP_042911252.1|1995509_1998962_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	27.6	5.0e-49
WP_080691156.1|1998962_2000351_-	SagB family peptide dehydrogenase	NA	NA	NA	NA	NA
WP_080691157.1|2002433_2006474_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	24.6	1.5e-41
WP_051445860.1|2008828_2009572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145929528.1|2009616_2009859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069953652.1|2009927_2010509_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_072501249.1|2011537_2011918_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_042909842.1|2012772_2013996_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2017495:2021052	attR	GGCACCGACGCCCTGGTCGCCGCTTTGCACCGGGCGGTGGCCTTTCGCCGATTCCGGGCGTCGCCGCTTTGCACCGGGCGGTGGCCTTTCGCCGATTCCGGGCGGCCGACGTGCGATCCATCCTGGCCGCCGGAACCCTGCCCGTCGCCCCGACCCGATCCCTGGACGCCTACAAGATCACGCCGATCATCGCCGACGGCGAGGTGATCTCATGACCAAGCCACCACCGGTCACTGACGCCAAACCCGTTGCACCACCGTCGGTCCCGCCATTGGCAGCCGACCTCGATGCCGGCCTGCGCCGGTTGAAACTGGCCGCCGTGCGACGCACCGCACCCGAAGTGTTGATTACCGCCAAGACCCAACGCTGGACCCCTGAGGAAGTCCTGCGCACCCTGATCGAGACCGAACTCGCCGCCCGCGACGCCTCCAACGTCGTCAACCGCCTCAAAGCCGCAGCGTTCCCGGTGCCCAAGACGCTGGAATCGTTCGACGTGGCCGCCTCCTCCATCCAGCCGAAGGTATTCGACCACCTGTCGAACCTGGAATGGATTCGGGCGCAACAGAACCTGGCCATCATCGGCCCAGCCGGCACCGGCAAGTCCCACACTCTCATAGGGTTGGGGACCGCAGCGATCCACGCCGGGCACAAGGTGCGCTACTTCACCGCCGCCGACCTCATCGAAACCCTCTACCGCGGACTGGCCGACAACACCGTCGGCAAGATCATCGAATCGCTGCTGCGAGTCGATCTGATCATCCTCGACGAACCGGGCTTCGCCCCACTGGATGACACCGGCACGCAGTTGTTGTTCCGACTAATCGCCGGCGCCTACGAACGCCGATCCCTGGCCATCGGCTCACACTGGCCCTTCGAACAATGGGGACACTTCCTGCCCGAACAGACAACCGCAGTCAGCATCCTCGACCGCCTCCTGCACCACGCCACCGTCGTCATCACCGACGGCGACTCCTACCGCATGAAAGACGCCAAACACCGAAAGGAGCAACCCAAACCAACCTAGGAATTACCGCACGGGCTGGATACTTTCATCTGGCCACCAGCGGATACTTCAACTTGGCCATTGACAGCCGTCGCGGCGGCAGCCGCGAGGGCGCAGGTTCCCAGCGCGACTCGGCGTCGAAGATTGGTCGTCATTCCGTAACCCCTTTCCACAAAACGCAATTCAGCGGTCTCAGCAGGTTGAGAGATGACATACTCGCGGGGCATGTCGTGGGCGAAGTTGACTTGATAGGGGTGACCCGCTCGGCTATCCGACCAACAGAGCAGTGGGTCAACGTGCGGGCGGCAGGGCCGAGAACCTGCCCACTGTTGGCCGCCGCACCTAGCGTCACATCGTGCAATGTGAGCGAGGTTTGGGACGCTCAAGACGATCTGATAGAGGCCTACGGTCCGTCCGCCGCAGCGGCGGTCGCTGTGAAAAGTGTGCGATCCGGGGTAACGACGTGGCGCGGCCGATCGCACCTGCCTGGCAGTCGTCGTCCTGGCGGCACACCTGTCAGATACATGGCTAGCGGGTGTCCGGGGTGGTCGCCAGCCAGGTATGAGCCTGTCTAGCAGCCACTTACAACTCCAAACCCTGGAAAGTAAGCTCGGTATCCCGCGCTGTGCGGTGTGTACGCAGCTGCTGTCCACGGTGCTTCCTTTGACGGCCGCGAAACCGGGCCGCCCGTAACAACTACTATCTATGTACAGAGATAGTAGTTGCTGCGGAGGCGCCCCACAATCACGAACTGAAGCGCATCGGCACACCTGCGGTGCGATCGGCCAGCCGTGTGCTCATCGCTTTGGGAGAGGCCCGGCGCCCGGGCGCGACGAGACGCCGGCAAGGTTGCGGCGAGTCGTTGTCCAATCGACGCACCCGGTCCACGTTTGCATTACTATCTACGTACGGAGAAAGTATCGCGATTCGGAGACCGGTGCGGCCCTGCCAGCGCGACAGACACCCGACACTGGTACCCGGGAGAGGTCCATAGTGCGGATACGAGGATTCGGAGAACTTGAGGCGGTCATCATGGACCGCATTTGGAACCGCGACCCGGCCGACGCGACCACAGTGCGCGAGGTCTTCGACGACCTTGCGGCCGAACGCACCATCGCGTACACGACGGTGATGTCCACGATGGACAACCTGCATACCAAGGGCTGGCTGCGGCGAGAACGCGATGGCAAGGCCTACCGGTATCGGCCCACCATGTCGCGCGAGCAGCACAGCGCCCGGCTCATGCGGGAGGCATTCGCCGGCGGCGGTCATCCCGATCTGGTGCTTCATCATTTCGTCGAACAGATCGGCCCTGAGGAATCCGCACGCCTGCGTGCTGCGCTGCGACGGCGGCGGTCGAAATGAGAGCCGACCAGCGGTGAACATCGCTATTTGCCTGCTGTTGTACAGCCTGGCGATGCTGGTCGCCGGACCGCCGCTGTTGCGTGAGCTGACTTGGCATGGACATGCCCCCCGATTTGGGGTTGCCGCCTGGTTGACCGCTATCGCCACGGTGCTACTGACCTGGCTGCTAGCAGCGGGAATGACCCTTCTCGCGGTAGCCAGTCACTGGATCTACCCGCGAGCGCTGGTGGAATCCTGTCTGGTCCGGTTGCGCGGCGTGGTGGCCCCCAGCATCACGCTGGGAGTAATCGGCGCAATGGTCGCGCTGCTGGCCGCGGTCAGCAGCGTGCGCCTGGCTAGCACCGTTTCGCGGATGCGTGCCCGCGCGCGTGCGCACGCCGAGGCGGTGTGCATGGTCGGTCATCGCAACGGCGATGGATATGTGCTTGTGGATGCCGCCGAGCCCGCCGCGTACTGTGTCGCAGGCCGGCCCCCCGCGATCGTCGTGACCAGCGCTGCCCTTGCTGCACTCGATGAGAAGGAGTTGGCTGCGGTCCTCGCCCACGAACGGGCCCATCTGCATGGACGCCACTCGCTAGTGGTCACCACGCTACGCGGCCTTGCGGCGATACTTCCAAAGCTGACCCTGATGCGTGAGGGTGCCAGTGAGGTCTCACGCCTACTGGAGATGTGCGCCGATGACGCCTCGGCGCGCCGGCACGGCTCCGGCGTCTTGTTATCTGGACTGATCACCATGTGCCGCGCGACCCCGGCCGGGGCCCTTGCGGCAGCCGACGTGGCCGTGCTCGCCCGCGCCGACCGGCTCGCTGTGCCACCAGGAGACCCTGCAATAGCAAGGGCGCGTGCAGCACTCATTAGTGTCATCGCGGTCATGGTTTTCGGGCCTGTCATGACCGCGGCGCTTGCCGCCTCAGGCATCCTCACCTGCGTGATATAGCGAGGCACATAAGTCGACACATACATGCAATTAACGCAGGCAGTGGCACCGCGTATCCGTCGCGGCAGCGACATCAGCGTCCGGAGATCACACCCGCATGGATAGCGCCGTGTGGTCGGCAATCGAAGGAAGGTCATTAAGAATGATGTGGCATGGCGGAAACTGGTTGGGCGGTTCGATCGTCATGACCGTGGCGATGGTGGTGTTTTGGCTGGTGTTGGTCACTGCGGTGGTATTCACCGTGCGATACATC	NA	NA	NA	NA
>prophage 5
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	3658521	3667611	5852822		Shahe_endorna-like_virus(50.0%)	8	NA	NA
WP_042912268.1|3658521_3659778_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	34.4	4.3e-06
WP_042912270.1|3659785_3660565_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_029384366.1|3660660_3661452_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_020822883.1|3661579_3662386_-	class I SAM-dependent methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	53.1	7.6e-57
WP_072501358.1|3662481_3663768_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	44.4	1.2e-08
WP_069953851.1|3664181_3665450_-	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	38.7	4.3e-06
WP_065502061.1|3665541_3666348_-	class I SAM-dependent methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	52.2	9.2e-55
WP_069953852.1|3666501_3667611_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L0I7	Tupanvirus	24.6	1.5e-15
>prophage 6
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	4381806	4388382	5852822		Bacillus_phage(33.33%)	7	NA	NA
WP_172417591.1|4381806_4383924_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	3.2e-208
WP_008259183.1|4383941_4384394_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	40.2	5.8e-14
WP_008259184.1|4384425_4384665_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	63.2	1.3e-20
WP_008259185.1|4385193_4385748_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	34.4	1.2e-05
WP_008259186.1|4385839_4386454_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008259187.1|4386462_4387506_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	29.1	3.9e-21
WP_008259188.1|4387440_4388382_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	28.8	1.2e-05
>prophage 7
NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5852822	4946125	4954771	5852822		Burkholderia_phage(50.0%)	8	NA	NA
WP_014385777.1|4946125_4947652_+	cyclic nucleotide-binding domain-containing protein	NA	W8CYF6	Bacillus_phage	37.4	1.3e-12
WP_042913325.1|4947691_4948531_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042913327.1|4948527_4949394_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008260499.1|4949421_4950417_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	5.8e-75
WP_042913511.1|4950418_4951036_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	38.8	1.3e-27
WP_042913329.1|4951235_4952357_+	acyltransferase	NA	A9YX16	Burkholderia_phage	27.7	2.9e-14
WP_042913331.1|4952486_4953623_+	acyltransferase	NA	A9YX16	Burkholderia_phage	28.0	2.6e-18
WP_042913512.1|4953682_4954771_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.4	1.3e-16
>prophage 1
NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	437571	48239	56109	437571		Mycobacterium_phage(50.0%)	14	NA	NA
WP_072501555.1|48239_48593_-	hypothetical protein	NA	A0A1D8EVD7	Mycobacterium_phage	45.5	5.1e-18
WP_069954004.1|48687_48891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142304815.1|48929_49220_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_069954006.1|49586_49871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954313.1|49907_50114_-	hypothetical protein	NA	A0A160DFA4	Gordonia_phage	53.7	2.2e-13
WP_069954007.1|50237_50576_-	hypothetical protein	NA	G1JWG3	Mycobacterium_phage	37.7	4.6e-08
WP_069954008.1|50783_51083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158514591.1|51406_51571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954009.1|51585_53055_-	AAA family ATPase	NA	A0A0R6PCP6	Moraxella_phage	35.1	8.5e-14
WP_142304814.1|53051_53324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501557.1|53472_53793_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142304813.1|53820_54009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954011.1|54083_54404_-	hypothetical protein	NA	Q19YZ6	Mycobacterium_phage	40.2	1.1e-06
WP_145929609.1|54456_56109_-	DEAD/DEAH box helicase family protein	NA	I4AZM6	Saccharomonospora_phage	38.0	2.2e-87
>prophage 2
NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	437571	93467	146012	437571	tRNA,transposase,integrase	Gordonia_phage(28.57%)	58	139015:139036	152840:152861
WP_069954046.1|93467_94097_+|transposase	IS607 family transposase	transposase	Q331Z3	Clostridium_botulinum_C_phage	37.1	2.9e-19
WP_145929568.1|94093_94639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145929569.1|94865_95795_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	NA	NA	NA	NA
WP_158514594.1|95825_95972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083533472.1|96383_96989_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_069953652.1|97100_97682_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_069954051.1|101157_101361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954052.1|101540_102005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954053.1|102057_102285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954054.1|103581_104862_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	33.7	1.2e-59
WP_072501568.1|105492_105837_-	DUF5131 family protein	NA	A0A1B3B211	Gordonia_phage	43.8	2.1e-16
WP_069954056.1|105929_106628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954057.1|106679_107060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145929570.1|107280_107589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158514595.1|107968_108109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158514596.1|108515_108665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954059.1|108775_109108_+	DUF4031 domain-containing protein	NA	A0A291LA06	Bordetella_phage	52.9	5.5e-14
WP_069954060.1|109226_109460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954316.1|109483_109765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072501569.1|109961_110291_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_069954317.1|110546_110807_+	hypothetical protein	NA	A0A142K984	Gordonia_phage	58.2	4.8e-13
WP_158514597.1|110860_111013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954061.1|111922_112144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158514598.1|112186_113893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954065.1|114268_114547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954066.1|114591_115407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954067.1|115403_115658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954068.1|117325_117532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954069.1|117580_117859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954070.1|117863_118175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954072.1|119354_119567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145929573.1|119557_120115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145929574.1|120152_120632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954074.1|120725_121208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954075.1|121326_121974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095786373.1|122190_122631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173662764.1|122627_123380_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_069954077.1|123552_124344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069953934.1|125027_125411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069953690.1|125462_126872_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	X4YD35	Pseudomonas_phage	30.8	1.9e-07
WP_069953691.1|126868_127681_+	ExeA family protein	NA	NA	NA	NA	NA
WP_069954078.1|127781_128075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954079.1|128267_129239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145929575.1|129228_129801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145929576.1|129933_131319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158514599.1|131315_133094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145929577.1|133107_133356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145929578.1|133529_134042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954084.1|134205_134973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954085.1|135183_135573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954086.1|135666_136074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954087.1|136082_137294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087139680.1|137683_138953_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	51.3	2.2e-55
139015:139036	attL	GTTTTGCCATGAGCATGGGACC	NA	NA	NA	NA
WP_007170747.1|139238_140237_+	Lsr2 family protein	NA	NA	NA	NA	NA
WP_007170748.1|140274_141054_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_042909843.1|142042_142330_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_046182709.1|142326_144792_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|144788_146012_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
152840:152861	attR	GGTCCCATGCTCATGGCAAAAC	NA	NA	NA	NA
>prophage 3
NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	437571	149253	180155	437571	transposase,integrase	Mycobacterium_phage(14.29%)	32	160403:160419	164022:164038
WP_083533498.1|149253_150564_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1I9SC88	Mycobacterium_phage	31.2	4.3e-09
WP_072501575.1|150560_151559_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_069954091.1|151510_152500_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	31.7	7.0e-12
WP_158514600.1|152578_152734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083533501.1|152823_153252_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_069954321.1|153252_153594_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_069954092.1|154188_154383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954093.1|154373_154808_+	PIN domain nuclease	NA	NA	NA	NA	NA
WP_069954094.1|154931_155276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083533504.1|155278_155812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069953769.1|156148_156589_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_069953768.1|158814_159921_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A220NQQ9	Corynebacterium_phage	31.1	3.6e-09
160403:160419	attL	GATCTCGGTGAGCACCG	NA	NA	NA	NA
WP_054586091.1|160483_162097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054586092.1|162098_162416_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_054586093.1|162422_163475_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A142KCU7	Gordonia_phage	25.7	2.3e-05
WP_145929579.1|164543_164846_-	hypothetical protein	NA	NA	NA	NA	NA
164022:164038	attR	GATCTCGGTGAGCACCG	NA	NA	NA	NA
WP_158514601.1|164972_165095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954098.1|165784_166294_-	(3R)-hydroxyacyl-ACP dehydratase subunit HadC	NA	NA	NA	NA	NA
WP_072501577.1|166296_166725_-	(3R)-hydroxyacyl-ACP dehydratase subunit HadB	NA	NA	NA	NA	NA
WP_072501641.1|167613_167946_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A9D9Y1	Lactobacillus_prophage	35.5	2.7e-08
WP_069954322.1|167945_168203_-	antitoxin	NA	NA	NA	NA	NA
WP_069954099.1|168627_168960_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_145929580.1|169113_169845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083533558.1|170920_171094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145929581.1|171130_173443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954102.1|173683_174880_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_069954103.1|175205_176267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501581.1|176263_177193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158514617.1|177416_177725_+	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
WP_069954107.1|177735_178806_+	macro domain-containing protein	NA	B3FJ30	Pseudomonas_phage	38.8	6.6e-24
WP_072501583.1|179254_179617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501642.1|179804_180155_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	41.5	5.1e-18
>prophage 4
NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	437571	377708	423675	437571	protease,transposase	Streptomyces_phage(20.0%)	46	NA	NA
WP_069954258.1|377708_378197_-|protease	hydrogenase maturation protease	protease	NA	NA	NA	NA
WP_069954259.1|378323_379670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954260.1|379666_380308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954261.1|380304_380931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954262.1|380927_381833_-	NifU family protein	NA	NA	NA	NA	NA
WP_069954263.1|381836_383639_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_069954264.1|383682_384738_-	hydrogenase expression protein HypE	NA	NA	NA	NA	NA
WP_069954265.1|385578_385914_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_069954266.1|386239_386551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072501623.1|386563_387634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083533564.1|387875_388280_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_069953652.1|390068_390650_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_145929607.1|391925_392702_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_142383117.1|392880_393246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142383116.1|393463_394735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954276.1|396493_396679_+	antitoxin	NA	NA	NA	NA	NA
WP_069954277.1|396751_397051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954278.1|397156_397615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954279.1|397611_398205_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069954340.1|398420_398654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954280.1|398763_399057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158514610.1|399840_400830_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_072501626.1|400888_401566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072501627.1|401642_404267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501628.1|404477_405248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083533566.1|405354_405576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954283.1|405766_406216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142383113.1|406226_407159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158514611.1|407215_407863_-	C40 family peptidase	NA	A0A2H4PI41	Streptomyces_phage	33.0	4.4e-07
WP_072501630.1|408017_408995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069954287.1|409073_409298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954288.1|409854_410394_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_069954289.1|410405_411119_-	phosphotransferase	NA	Q75ZG1	Hepacivirus	34.5	3.8e-20
WP_069954290.1|411179_412499_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	85.0	3.1e-217
WP_142383112.1|412660_413047_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_142383111.1|413101_413668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083533532.1|413840_414071_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_069953652.1|414238_414820_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383110.1|415337_416012_+	S1 family peptidase	NA	NA	NA	NA	NA
WP_072501632.1|416038_416491_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_142383109.1|417282_418023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954294.1|418123_418708_+|transposase	IS607 family transposase	transposase	F9VHY9	Thermus_phage	33.5	8.5e-18
WP_069954295.1|418707_420111_+|transposase	transposase	transposase	A0A0R8V9X2	Thermobifida_phage	28.8	3.3e-23
WP_142383108.1|420107_420845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069954296.1|420863_422876_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_158514612.1|422883_423675_+|transposase	transposase family protein	transposase	NA	NA	NA	NA
