assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	1	368058-368146	1	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Unclear	CCCTGGGGACCCGGCCCCGGCGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA|141aa|up_8|NZ_CP012885.2_357881_358304_-,NA|491aa|down_7|NZ_CP012885.2_375262_376735_-	NA|204aa|up_9|NZ_CP012885.2_357263_357875_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|141aa|up_8|NZ_CP012885.2_357881_358304_-	NA	NA|236aa|up_7|NZ_CP012885.2_358316_359024_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|410aa|up_6|NZ_CP012885.2_359016_360246_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	DEDDh|331aa|up_5|NZ_CP012885.2_360356_361349_+	PRK06063, PRK06063, DEDDh family exonuclease	NA|640aa|up_4|NZ_CP012885.2_361365_363285_-	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|422aa|up_3|NZ_CP012885.2_363570_364836_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|353aa|up_2|NZ_CP012885.2_364836_365895_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|334aa|up_1|NZ_CP012885.2_366032_367034_+	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|142aa|up_0|NZ_CP012885.2_367155_367581_+	pfam04592, SelP_N, Selenoprotein P, N terminal region	NA|219aa|down_0|NZ_CP012885.2_368298_368955_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|434aa|down_1|NZ_CP012885.2_369134_370436_+	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA	NA|438aa|down_2|NZ_CP012885.2_370432_371746_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|237aa|down_3|NZ_CP012885.2_371745_372456_+	TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC	NA|322aa|down_4|NZ_CP012885.2_372455_373421_+	COG4301, COG4301, Uncharacterized conserved protein [Function unknown]	NA|386aa|down_5|NZ_CP012885.2_373417_374575_+	TIGR04343, pyridoxal-phosphate-dependent_transferase, ergothioneine biosynthesis PLP-dependent enzyme EgtE	NA|227aa|down_6|NZ_CP012885.2_374571_375252_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|491aa|down_7|NZ_CP012885.2_375262_376735_-	NA	NA|519aa|down_8|NZ_CP012885.2_376840_378397_+	PRK00047, glpK, glycerol kinase GlpK	NA|240aa|down_9|NZ_CP012885.2_378429_379149_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	2	1608887-1608965	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	TCCGCCGCGGAGGTCCGTGGGCGCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA,NA	NA|589aa|up_9|NZ_CP012885.2_1595573_1597340_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|up_8|NZ_CP012885.2_1597521_1598079_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|up_7|NZ_CP012885.2_1598087_1598618_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|up_6|NZ_CP012885.2_1598712_1599216_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|up_5|NZ_CP012885.2_1599379_1600531_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|up_4|NZ_CP012885.2_1600527_1603149_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|415aa|up_3|NZ_CP012885.2_1603244_1604489_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|545aa|up_2|NZ_CP012885.2_1604475_1606110_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|612aa|up_1|NZ_CP012885.2_1606144_1607980_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|303aa|up_0|NZ_CP012885.2_1607976_1608885_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_0|NZ_CP012885.2_1609007_1609985_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|164aa|down_1|NZ_CP012885.2_1610197_1610689_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|130aa|down_2|NZ_CP012885.2_1610767_1611157_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|310aa|down_3|NZ_CP012885.2_1611320_1612250_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|614aa|down_4|NZ_CP012885.2_1612249_1614091_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|162aa|down_5|NZ_CP012885.2_1614149_1614635_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|130aa|down_6|NZ_CP012885.2_1614652_1615042_-	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|138aa|down_7|NZ_CP012885.2_1615085_1615499_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|293aa|down_8|NZ_CP012885.2_1615565_1616444_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|289aa|down_9|NZ_CP012885.2_1616513_1617380_+	pfam13424, TPR_12, Tetratricopeptide repeat
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	3	2581954-2582067	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	GGTGTGATCGCGGCTTCGCCGCTCAACA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA,NA|90aa|down_3|NZ_CP012885.2_2585359_2585629_-,NA|101aa|down_5|NZ_CP012885.2_2586802_2587105_+	NA|494aa|up_9|NZ_CP012885.2_2573049_2574531_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|317aa|up_8|NZ_CP012885.2_2574527_2575478_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|386aa|up_7|NZ_CP012885.2_2575744_2576902_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|249aa|up_6|NZ_CP012885.2_2576964_2577711_+	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|259aa|up_5|NZ_CP012885.2_2577716_2578493_+	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|215aa|up_4|NZ_CP012885.2_2578559_2579204_+	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|up_3|NZ_CP012885.2_2579369_2579660_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|266aa|up_2|NZ_CP012885.2_2579923_2580721_+	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|113aa|up_1|NZ_CP012885.2_2580814_2581153_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|225aa|up_0|NZ_CP012885.2_2581156_2581831_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|452aa|down_0|NZ_CP012885.2_2582337_2583693_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|177aa|down_1|NZ_CP012885.2_2583729_2584260_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|355aa|down_2|NZ_CP012885.2_2584262_2585327_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|90aa|down_3|NZ_CP012885.2_2585359_2585629_-	NA	NA|341aa|down_4|NZ_CP012885.2_2585625_2586648_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|101aa|down_5|NZ_CP012885.2_2586802_2587105_+	NA	NA|251aa|down_6|NZ_CP012885.2_2587179_2587932_+	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|196aa|down_7|NZ_CP012885.2_2587993_2588581_+	TIGR03847, TIGR03847, conserved hypothetical protein	NA|263aa|down_8|NZ_CP012885.2_2588591_2589380_+	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|256aa|down_9|NZ_CP012885.2_2589455_2590223_+	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	4	3644374-3644450	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	GTAGTAACCACTTGGTTAGGTGA	23	1	1	3644397-3644427	NZ_CP012888.2_7726-7756	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA|192aa|up_5|NZ_CP012885.2_3635700_3636276_-,NA|173aa|up_3|NZ_CP012885.2_3637562_3638081_-,NA|94aa|up_2|NZ_CP012885.2_3638194_3638476_-,NA|51aa|up_0|NZ_CP012885.2_3643623_3643776_+,NA	NA|206aa|up_9|NZ_CP012885.2_3630529_3631147_-	pfam01323, DSBA, DSBA-like thioredoxin domain	NA|106aa|up_8|NZ_CP012885.2_3631340_3631658_+	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|144aa|up_7|NZ_CP012885.2_3631829_3632261_+	pfam05423, Mycobact_memb, Mycobacterium membrane protein	NA|953aa|up_6|NZ_CP012885.2_3632257_3635116_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|192aa|up_5|NZ_CP012885.2_3635700_3636276_-	NA	NA|194aa|up_4|NZ_CP012885.2_3636759_3637341_+	pfam13936, HTH_38, Helix-turn-helix domain	NA|173aa|up_3|NZ_CP012885.2_3637562_3638081_-	NA	NA|94aa|up_2|NZ_CP012885.2_3638194_3638476_-	NA	NA|395aa|up_1|NZ_CP012885.2_3638531_3639716_-	pfam17964, Big_10, Bacterial Ig domain	NA|51aa|up_0|NZ_CP012885.2_3643623_3643776_+	NA	NA|192aa|down_0|NZ_CP012885.2_3645157_3645733_+	pfam14393, DUF4422, Domain of unknown function (DUF4422)	NA|258aa|down_1|NZ_CP012885.2_3645729_3646503_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|365aa|down_2|NZ_CP012885.2_3646484_3647579_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase	NA|184aa|down_3|NZ_CP012885.2_3647575_3648127_+	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production	NA|408aa|down_4|NZ_CP012885.2_3648123_3649347_+	pfam08484, Methyltransf_14, C-methyltransferase C-terminal domain	NA|243aa|down_5|NZ_CP012885.2_3649385_3650114_-	pfam04989, CmcI, Cephalosporin hydroxylase	NA|353aa|down_6|NZ_CP012885.2_3650148_3651207_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|276aa|down_7|NZ_CP012885.2_3651206_3652034_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|217aa|down_8|NZ_CP012885.2_3652406_3653057_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|439aa|down_9|NZ_CP012885.2_3653434_3654751_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	5	4114133-4114229	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	TGCCCGGCGTCGGCTGTGGCTCCGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA,NA|153aa|down_4|NZ_CP012885.2_4120335_4120794_-	NA|301aa|up_9|NZ_CP012885.2_4104639_4105542_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|251aa|up_8|NZ_CP012885.2_4105671_4106424_-	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|404aa|up_7|NZ_CP012885.2_4106473_4107685_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|245aa|up_6|NZ_CP012885.2_4107737_4108472_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|162aa|up_5|NZ_CP012885.2_4108571_4109057_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|267aa|up_4|NZ_CP012885.2_4109128_4109929_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|250aa|up_3|NZ_CP012885.2_4109971_4110721_+	pfam01738, DLH, Dienelactone hydrolase family	NA|371aa|up_2|NZ_CP012885.2_4110737_4111850_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|400aa|up_1|NZ_CP012885.2_4111846_4113046_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|261aa|up_0|NZ_CP012885.2_4113042_4113825_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|1079aa|down_0|NZ_CP012885.2_4114252_4117489_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|512aa|down_1|NZ_CP012885.2_4117485_4119021_-	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|270aa|down_2|NZ_CP012885.2_4119081_4119891_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|154aa|down_3|NZ_CP012885.2_4119881_4120343_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|153aa|down_4|NZ_CP012885.2_4120335_4120794_-	NA	NA|246aa|down_5|NZ_CP012885.2_4120790_4121528_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|453aa|down_6|NZ_CP012885.2_4121632_4122991_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|361aa|down_7|NZ_CP012885.2_4122997_4124080_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|336aa|down_8|NZ_CP012885.2_4124076_4125084_-	cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)	NA|217aa|down_9|NZ_CP012885.2_4125205_4125856_+	TIGR03384, betaine_BetI, transcriptional repressor BetI
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	6	4655362-4655495	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC	41	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA|54aa|up_1|NZ_CP012885.2_4652878_4653040_-,NA|79aa|down_4|NZ_CP012885.2_4664380_4664617_+	NA|217aa|up_9|NZ_CP012885.2_4642854_4643505_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|327aa|up_8|NZ_CP012885.2_4643606_4644587_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|993aa|up_7|NZ_CP012885.2_4644590_4647569_-	PRK00068, PRK00068, hypothetical protein; Validated	NA|341aa|up_6|NZ_CP012885.2_4647642_4648665_-	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]	NA|459aa|up_5|NZ_CP012885.2_4648771_4650148_+	COG5282, COG5282, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_4|NZ_CP012885.2_4650183_4651050_+	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain	NA|448aa|up_3|NZ_CP012885.2_4651131_4652475_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|84aa|up_2|NZ_CP012885.2_4652484_4652736_-	pfam02467, Whib, Transcription factor WhiB	NA|54aa|up_1|NZ_CP012885.2_4652878_4653040_-	NA	NA|704aa|up_0|NZ_CP012885.2_4653140_4655252_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|85aa|down_0|NZ_CP012885.2_4655506_4655761_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|311aa|down_1|NZ_CP012885.2_4655772_4656705_-	PRK00241, nudC, NAD(+) diphosphatase	NA|357aa|down_2|NZ_CP012885.2_4656704_4657775_-	pfam02254, TrkA_N, TrkA-N domain	NA|1042aa|down_3|NZ_CP012885.2_4661167_4664293_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|79aa|down_4|NZ_CP012885.2_4664380_4664617_+	NA	NA|262aa|down_5|NZ_CP012885.2_4664662_4665448_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|104aa|down_6|NZ_CP012885.2_4665450_4665762_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|285aa|down_7|NZ_CP012885.2_4665768_4666623_-	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein	NA|396aa|down_8|NZ_CP012885.2_4666658_4667846_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated	NA|278aa|down_9|NZ_CP012885.2_4667927_4668761_-	pfam11350, DUF3152, Protein of unknown function (DUF3152)
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	7	5487757-5487838	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	GGCCAGCGACACCGCCGGCACGTGCA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA|55aa|up_8|NZ_CP012885.2_5478766_5478931_+,NA	NA|249aa|up_9|NZ_CP012885.2_5477894_5478641_+	PRK12386, PRK12386, fumarate reductase iron-sulfur subunit; Provisional	NA|55aa|up_8|NZ_CP012885.2_5478766_5478931_+	NA	NA|163aa|up_7|NZ_CP012885.2_5478949_5479438_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|353aa|up_6|NZ_CP012885.2_5479518_5480577_-	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|612aa|up_5|NZ_CP012885.2_5480737_5482573_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|157aa|up_4|NZ_CP012885.2_5482659_5483130_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|123aa|up_3|NZ_CP012885.2_5483191_5483560_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|449aa|up_2|NZ_CP012885.2_5483838_5485185_-	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase	NA|455aa|up_1|NZ_CP012885.2_5485336_5486701_+	PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|284aa|up_0|NZ_CP012885.2_5486710_5487562_+	pfam01575, MaoC_dehydratas, MaoC like domain	NA|215aa|down_0|NZ_CP012885.2_5488861_5489506_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|384aa|down_1|NZ_CP012885.2_5489844_5490996_-	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|65aa|down_2|NZ_CP012885.2_5491083_5491278_+	pfam11021, DUF2613, Protein of unknown function (DUF2613)	NA|58aa|down_3|NZ_CP012885.2_5491369_5491543_+	pfam11021, DUF2613, Protein of unknown function (DUF2613)	NA|1403aa|down_4|NZ_CP012885.2_5491598_5495807_+	pfam11847, DUF3367, Domain of unknown function (DUF3367)	NA|483aa|down_5|NZ_CP012885.2_5495905_5497354_+	pfam06762, LMF1, Lipase maturation factor	NA|335aa|down_6|NZ_CP012885.2_5497594_5498599_+	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|419aa|down_7|NZ_CP012885.2_5499221_5500478_+	pfam00823, PPE, PPE family	NA|457aa|down_8|NZ_CP012885.2_5500492_5501863_+	pfam00823, PPE, PPE family	NA|117aa|down_9|NZ_CP012885.2_5501883_5502234_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	8	5553961-5554046	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	CGAGGCCGCCGAACGCAGGTGCACA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA|99aa|up_9|NZ_CP012885.2_5543164_5543461_-,NA|523aa|down_8|NZ_CP012885.2_5563963_5565532_-,NA|366aa|down_9|NZ_CP012885.2_5565528_5566626_-	NA|99aa|up_9|NZ_CP012885.2_5543164_5543461_-	NA	NA|506aa|up_8|NZ_CP012885.2_5543481_5544999_-	cd04433, AFD_class_I, Adenylate forming domain, Class I, also known as the ANL superfamily	NA|181aa|up_7|NZ_CP012885.2_5545178_5545721_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|197aa|up_6|NZ_CP012885.2_5545820_5546411_+	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain	NA|273aa|up_5|NZ_CP012885.2_5546407_5547226_-	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein	NA|470aa|up_4|NZ_CP012885.2_5547310_5548720_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|402aa|up_3|NZ_CP012885.2_5548764_5549970_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|221aa|up_2|NZ_CP012885.2_5550138_5550801_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|243aa|up_1|NZ_CP012885.2_5551028_5551757_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|300aa|up_0|NZ_CP012885.2_5551931_5552831_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|397aa|down_0|NZ_CP012885.2_5554145_5555336_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|339aa|down_1|NZ_CP012885.2_5555358_5556375_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|382aa|down_2|NZ_CP012885.2_5556498_5557644_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|158aa|down_3|NZ_CP012885.2_5557729_5558203_+	pfam04505, CD225, Interferon-induced transmembrane protein	NA|314aa|down_4|NZ_CP012885.2_5558245_5559187_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|510aa|down_5|NZ_CP012885.2_5559190_5560720_-	PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated	NA|362aa|down_6|NZ_CP012885.2_5560911_5561997_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|609aa|down_7|NZ_CP012885.2_5561997_5563824_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|523aa|down_8|NZ_CP012885.2_5563963_5565532_-	NA	NA|366aa|down_9|NZ_CP012885.2_5565528_5566626_-	NA
GCF_001750065.2_ASM175006v2	NZ_CP012885	Mycobacterium chimaera strain AH16 chromosome, complete genome	9	5805509-5805595	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4	Orphan	GCGGTCGTCGCGGCCGGCGCGCCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,RT,cas4,WYL,c2c9_V-U4,csf1gr8,csf4gr11,csf2gr7,csf3gr5,Cas9_archaeal	NA,NA|379aa|down_0|NZ_CP012885.2_5805672_5806809_-,NA|87aa|down_5|NZ_CP012885.2_5812211_5812472_+,NA|127aa|down_8|NZ_CP012885.2_5814480_5814861_+	NA|403aa|up_9|NZ_CP012885.2_5794074_5795283_-	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|742aa|up_8|NZ_CP012885.2_5795291_5797517_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|199aa|up_7|NZ_CP012885.2_5797674_5798271_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP012885.2_5798257_5798896_-	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|365aa|up_5|NZ_CP012885.2_5798958_5800053_+	COG5402, COG5402, Uncharacterized conserved protein [Function unknown]	NA|391aa|up_4|NZ_CP012885.2_5800052_5801225_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|360aa|up_3|NZ_CP012885.2_5801306_5802386_+	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|298aa|up_2|NZ_CP012885.2_5802468_5803362_-	PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed	NA|126aa|up_1|NZ_CP012885.2_5803710_5804088_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|148aa|up_0|NZ_CP012885.2_5804148_5804592_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|379aa|down_0|NZ_CP012885.2_5805672_5806809_-	NA	NA|207aa|down_1|NZ_CP012885.2_5806930_5807551_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|382aa|down_2|NZ_CP012885.2_5807653_5808799_+	pfam02958, EcKinase, Ecdysteroid kinase	NA|587aa|down_3|NZ_CP012885.2_5808925_5810686_+	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|443aa|down_4|NZ_CP012885.2_5810698_5812027_+	cd08882, RHO_alpha_C_MupW-like, C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases	NA|87aa|down_5|NZ_CP012885.2_5812211_5812472_+	NA	NA|219aa|down_6|NZ_CP012885.2_5812476_5813133_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_7|NZ_CP012885.2_5813129_5814347_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|127aa|down_8|NZ_CP012885.2_5814480_5814861_+	NA	NA|952aa|down_9|NZ_CP012885.2_5814853_5817709_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein
