assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001767255.1_ASM176725v1	NZ_CP017639	Corynebacterium sp. NML98-0116 chromosome	1	18554-18693	1	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	Type I-E	CCTGGCCGACCCCCGACCTGGGCTTTTATCGACGCCGCTTCCCAAAA	47	0	0	NA	NA	NA	1	1	TypeI-E	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	NA|223aa|up_6|NZ_CP017639.1_10460_11129_-,NA|328aa|down_2|NZ_CP017639.1_20836_21820_+,NA|335aa|down_5|NZ_CP017639.1_24162_25167_-	NA|500aa|up_9|NZ_CP017639.1_6959_8459_-	PRK13564, PRK13564, anthranilate synthase component 1	NA|159aa|up_8|NZ_CP017639.1_8708_9185_-	pfam13630, SdpI, SdpI/YfhL protein family	NA|405aa|up_7|NZ_CP017639.1_9256_10471_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|223aa|up_6|NZ_CP017639.1_10460_11129_-	NA	NA|293aa|up_5|NZ_CP017639.1_11138_12017_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|282aa|up_4|NZ_CP017639.1_12020_12866_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|443aa|up_3|NZ_CP017639.1_12948_14277_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|410aa|up_2|NZ_CP017639.1_14401_15631_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|375aa|up_1|NZ_CP017639.1_15640_16765_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|365aa|up_0|NZ_CP017639.1_17162_18257_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|144aa|down_0|NZ_CP017639.1_19104_19536_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|380aa|down_1|NZ_CP017639.1_19532_20672_-	COG0281, SfcA, Malic enzyme [Energy production and conversion]	NA|328aa|down_2|NZ_CP017639.1_20836_21820_+	NA	NA|145aa|down_3|NZ_CP017639.1_21950_22385_+	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|527aa|down_4|NZ_CP017639.1_22429_24010_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_5|NZ_CP017639.1_24162_25167_-	NA	cas2|119aa|down_6|NZ_CP017639.1_25446_25803_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|313aa|down_7|NZ_CP017639.1_25799_26738_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|238aa|down_8|NZ_CP017639.1_26739_27453_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|241aa|down_9|NZ_CP017639.1_27449_28172_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_001767255.1_ASM176725v1	NZ_CP017639	Corynebacterium sp. NML98-0116 chromosome	2	34769-38761	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	Type I-E	GTCCTCCCCGCGCTCGCGGGGATGAGCC,GTCCTCCCCGCGCTCGCGGGGATGAGCC,GTCCTCCCCGCGCTCGCGGGGATGAGCC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	65,65,54	65	TypeI-E	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	NA|335aa|up_8|NZ_CP017639.1_24162_25167_-,NA|115aa|down_1|NZ_CP017639.1_41164_41509_+,NA|67aa|down_3|NZ_CP017639.1_43602_43803_+,NA|76aa|down_4|NZ_CP017639.1_43900_44128_+,NA|258aa|down_5|NZ_CP017639.1_44141_44915_+,NA|243aa|down_6|NZ_CP017639.1_45402_46131_+,NA|125aa|down_7|NZ_CP017639.1_46103_46478_+,NA|95aa|down_8|NZ_CP017639.1_46474_46759_+	NA|527aa|up_9|NZ_CP017639.1_22429_24010_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|up_8|NZ_CP017639.1_24162_25167_-	NA	cas2|119aa|up_7|NZ_CP017639.1_25446_25803_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|313aa|up_6|NZ_CP017639.1_25799_26738_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|238aa|up_5|NZ_CP017639.1_26739_27453_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|241aa|up_4|NZ_CP017639.1_27449_28172_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|377aa|up_3|NZ_CP017639.1_28168_29299_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|210aa|up_2|NZ_CP017639.1_29323_29953_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|568aa|up_1|NZ_CP017639.1_29945_31649_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|929aa|up_0|NZ_CP017639.1_31707_34494_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|569aa|down_0|NZ_CP017639.1_39461_41168_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|115aa|down_1|NZ_CP017639.1_41164_41509_+	NA	NA|530aa|down_2|NZ_CP017639.1_41508_43098_+	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol)	NA|67aa|down_3|NZ_CP017639.1_43602_43803_+	NA	NA|76aa|down_4|NZ_CP017639.1_43900_44128_+	NA	NA|258aa|down_5|NZ_CP017639.1_44141_44915_+	NA	NA|243aa|down_6|NZ_CP017639.1_45402_46131_+	NA	NA|125aa|down_7|NZ_CP017639.1_46103_46478_+	NA	NA|95aa|down_8|NZ_CP017639.1_46474_46759_+	NA	NA|488aa|down_9|NZ_CP017639.1_47056_48520_+	pfam00665, rve, Integrase core domain
GCF_001767255.1_ASM176725v1	NZ_CP017639	Corynebacterium sp. NML98-0116 chromosome	3	107085-107170	3	CRISPRCasFinder	no	cas3	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	Unclear	AAACCGGCACGATCGTGCCGAAACT	25	0	0	NA	NA	NA	1	1	Unclear	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	NA|188aa|up_9|NZ_CP017639.1_88366_88930_-,NA|156aa|up_5|NZ_CP017639.1_100640_101108_+,NA|67aa|up_0|NZ_CP017639.1_106717_106918_-,NA|258aa|down_6|NZ_CP017639.1_113613_114387_+,NA|246aa|down_8|NZ_CP017639.1_116936_117674_+	NA|188aa|up_9|NZ_CP017639.1_88366_88930_-	NA	cas3|2123aa|up_8|NZ_CP017639.1_89309_95678_+	COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	NA|751aa|up_7|NZ_CP017639.1_95674_97927_+	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases	NA|696aa|up_6|NZ_CP017639.1_98292_100380_-	COG3472, COG3472, Uncharacterized conserved protein [Function unknown]	NA|156aa|up_5|NZ_CP017639.1_100640_101108_+	NA	NA|685aa|up_4|NZ_CP017639.1_101601_103656_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]	NA|114aa|up_3|NZ_CP017639.1_104441_104783_+	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|144aa|up_2|NZ_CP017639.1_104798_105230_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|203aa|up_1|NZ_CP017639.1_105516_106125_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|67aa|up_0|NZ_CP017639.1_106717_106918_-	NA	NA|75aa|down_0|NZ_CP017639.1_107216_107441_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|454aa|down_1|NZ_CP017639.1_107593_108955_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|115aa|down_2|NZ_CP017639.1_109091_109436_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|195aa|down_3|NZ_CP017639.1_109432_110017_+	pfam13470, PIN_3, PIN domain	NA|578aa|down_4|NZ_CP017639.1_110238_111972_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|319aa|down_5|NZ_CP017639.1_112503_113460_+	TIGR01921, Meso-diaminopimelate_D-dehydrogenase, diaminopimelate dehydrogenase	NA|258aa|down_6|NZ_CP017639.1_113613_114387_+	NA	NA|573aa|down_7|NZ_CP017639.1_114556_116275_-	pfam18685, DUF5635, Family of unknown function (DUF5635)	NA|246aa|down_8|NZ_CP017639.1_116936_117674_+	NA	NA|122aa|down_9|NZ_CP017639.1_117926_118292_-	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases
GCF_001767255.1_ASM176725v1	NZ_CP017639	Corynebacterium sp. NML98-0116 chromosome	4	517543-517691	2	PILER-CR	no	DinG	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	Type IV-A	ACAGTCCGCCGCGCGGACACCCACCAACAAA	31	0	0	NA	NA	NA	2	2	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	NA,NA	NA|157aa|up_9|NZ_CP017639.1_508287_508758_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|243aa|up_8|NZ_CP017639.1_508811_509540_+	cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins	NA|648aa|up_7|NZ_CP017639.1_509751_511695_+	TIGR02104, pulA_typeI, pullulanase, type I	NA|324aa|up_6|NZ_CP017639.1_511651_512623_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|161aa|up_5|NZ_CP017639.1_512658_513141_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|252aa|up_4|NZ_CP017639.1_513133_513889_+	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|283aa|up_3|NZ_CP017639.1_513885_514734_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|454aa|up_2|NZ_CP017639.1_514769_516131_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|41aa|up_1|NZ_CP017639.1_516245_516368_+	PRK00831, rpmJ, 50S ribosomal protein L36; Validated	NA|280aa|up_0|NZ_CP017639.1_516437_517277_+	cd14915, MYSc_Myh4, class II myosin heavy chain 4, motor domain	NA|407aa|down_0|NZ_CP017639.1_517764_518985_+	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|1206aa|down_1|NZ_CP017639.1_519003_522621_-	smart00736, CADG, Dystroglycan-type cadherin-like domains	NA|517aa|down_2|NZ_CP017639.1_522652_524203_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|274aa|down_3|NZ_CP017639.1_524199_525021_-	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head	NA|76aa|down_4|NZ_CP017639.1_525289_525517_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|182aa|down_5|NZ_CP017639.1_525586_526132_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|718aa|down_6|NZ_CP017639.1_526175_528329_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|244aa|down_7|NZ_CP017639.1_528353_529085_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|330aa|down_8|NZ_CP017639.1_529340_530330_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|579aa|down_9|NZ_CP017639.1_530704_532441_+	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I
GCF_001767255.1_ASM176725v1	NZ_CP017639	Corynebacterium sp. NML98-0116 chromosome	5	2365049-2365139	4	CRISPRCasFinder	no		cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	Orphan	TGTCCGCCGCGCGGACACCCACC	23	0	0	NA	NA	NA	1	1	Orphan	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DinG,DEDDh,PrimPol,cas4,WYL,csa3	NA|144aa|up_2|NZ_CP017639.1_2363068_2363500_+,NA|114aa|up_1|NZ_CP017639.1_2363520_2363862_+,NA	NA|189aa|up_9|NZ_CP017639.1_2352601_2353168_-	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed	NA|1103aa|up_8|NZ_CP017639.1_2353236_2356545_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|251aa|up_7|NZ_CP017639.1_2359008_2359761_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|474aa|up_6|NZ_CP017639.1_2359910_2361332_+	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|203aa|up_5|NZ_CP017639.1_2361324_2361933_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|238aa|up_4|NZ_CP017639.1_2361933_2362647_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|111aa|up_3|NZ_CP017639.1_2362643_2362976_+	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|144aa|up_2|NZ_CP017639.1_2363068_2363500_+	NA	NA|114aa|up_1|NZ_CP017639.1_2363520_2363862_+	NA	NA|148aa|up_0|NZ_CP017639.1_2364193_2364637_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
