The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	0	60546	4128984	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|45761_46712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|47298_47847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|47818_48055_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|48182_49076_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|50245_51493_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|51489_52104_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|52239_53190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|53232_54489_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|55720_56455_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|56460_57051_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|57075_57765_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|57761_58523_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|58602_59502_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|59595_60546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	71183	124171	4128984	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|71183_72134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|72227_72542_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|73734_75642_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|75803_76424_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|76455_77037_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|77125_77377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|77378_78221_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|78326_79736_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|79732_80683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|80757_81702_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_050846609.1|81698_83573_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	3.3e-23
WP_003807102.1|84920_85625_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|85621_86728_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|86989_87583_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|87579_88767_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|88829_90089_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|90112_91201_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|91208_92309_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|92312_92888_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|92891_93944_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|94074_95082_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|95083_96370_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|96386_96542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|96566_97370_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|97366_98233_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|98307_99438_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|99437_100277_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|101209_101812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|101841_102495_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|102627_103884_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|103964_104831_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|104906_105182_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|105189_105852_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|105913_106915_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|106929_107478_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|107535_108432_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|108428_109490_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|109525_110476_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|111375_112569_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|112650_113280_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|113341_114025_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|114034_115717_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|116004_116352_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|116442_116760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|117042_118059_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|118134_118935_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|118931_119807_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|119817_121110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|121152_122193_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|122298_123120_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|123220_124171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	166990	303613	4128984	protease,transposase,tRNA	Klosneuvirus(10.53%)	116	NA	NA
WP_005015810.1|166990_167941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|169384_170287_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|170264_170894_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|171176_172607_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172640_173270_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|173318_174926_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174950_175634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175715_176192_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|176398_177349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178464_178992_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179083_179899_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179959_180694_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180731_182810_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183059_183332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183433_184519_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184522_186427_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|186423_190110_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190170_190734_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190741_191164_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|191191_191611_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191639_192086_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|192212_192710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192864_195135_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|195210_196416_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929673.1|197568_198204_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198200_199094_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199488_200589_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200670_201045_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201104_203969_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204113_204854_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204923_206135_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206163_207132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|207745_208696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|208852_209176_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|209280_210321_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|210326_211106_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|211151_211448_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|211473_211749_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|211805_212450_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|212449_213136_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|213334_214117_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|214167_214893_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|214924_216274_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|216385_217318_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|217775_220571_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|221164_224008_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|224178_224898_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|224936_225485_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|225639_226539_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|226563_227514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227732_228428_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228444_229857_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229969_231400_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231441_233355_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233673_234240_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234330_235332_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235446_236397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236483_237434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237430_238381_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238479_239277_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240226_240637_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241658_242402_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242445_243489_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243659_245762_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247172_248129_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248147_248639_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248635_249991_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249991_250690_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250686_251388_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251640_252690_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252795_253737_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253733_255623_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|255727_256348_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|256490_257876_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257806_258343_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258494_259886_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259902_260883_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261018_262002_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262066_262966_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263072_264827_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264834_265959_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265972_266953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267683_268634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269193_269739_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|269864_271442_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271457_272612_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272625_272751_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272747_274499_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274495_276175_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276237_276786_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277928_278207_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279250_280201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|280187_280403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280478_280640_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280647_280788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281306_281756_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281765_282377_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|282535_283384_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283409_284792_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284856_285498_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285637_286096_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286120_286897_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286950_288087_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288083_289034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|289132_289759_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|289781_290708_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|290716_292303_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|292299_293304_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|293503_294364_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|294395_295397_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|295467_296277_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|296354_298214_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|298342_299545_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|299658_300540_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|302042_302603_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|302662_303613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	392968	450477	4128984	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|392968_393919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|394055_394973_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394969_395218_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|395214_396420_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|396492_397488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397510_398731_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398727_399372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929483.1|401102_401912_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|402216_403170_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|403268_404252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|404178_404880_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404928_405699_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|405695_406874_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|407041_408748_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408744_409641_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409681_411271_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|411320_412313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|412381_412981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|413441_414422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|414497_415448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|415536_416451_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|416447_417107_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|417196_418120_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|418125_418581_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_023853020.1|418577_419579_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_042962164.1|419513_419909_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|419868_421488_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|421484_422543_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|422672_423167_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|423259_424237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|424432_425638_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|425634_427146_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|427161_428475_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|428665_428845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|429254_429989_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|432433_433384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|433515_433914_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|434324_434795_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|434883_435228_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|435327_436728_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|438516_439035_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|439145_439901_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|440096_441329_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|441321_442107_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|442173_443145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|443155_444133_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|444258_445431_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|445457_446486_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|446551_447745_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|449526_450477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	591482	652672	4128984	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591482_592433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592908_593799_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593795_594617_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594815_595307_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595325_596399_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596445_597549_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597624_598245_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598265_598775_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598829_599081_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599144_600278_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600285_600672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600668_603188_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603616_603955_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603951_604458_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604519_605320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605430_606372_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606465_608001_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609680_611531_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611534_612368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612367_613309_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613560_614532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614673_616962_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617268_618177_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618231_619197_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619271_620933_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|621004_621715_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621863_622814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623512_623896_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623953_624556_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624573_624975_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625090_626002_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625998_626580_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|627383_628109_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628149_629199_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629346_629925_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630311_631289_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631382_635777_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635977_636826_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636984_637797_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637852_638803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638901_639702_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639763_640147_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640158_641511_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641798_642128_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642130_642880_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643062_643983_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644029_644242_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644264_644687_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644703_645804_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645900_647418_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647493_648333_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648354_649227_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649317_650412_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650705_651656_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651730_652672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	657996	705236	4128984	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(17.39%)	51	NA	NA
WP_023995141.1|657996_659022_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659062_659302_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659371_660961_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660960_661509_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661589_662162_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662180_663092_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663165_664134_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664256_665330_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665334_667155_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667231_668182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668270_668606_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668739_669390_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669411_670830_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670899_671655_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671623_672382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672392_673274_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673290_673998_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|674000_674759_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674968_676711_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676703_677228_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677267_678062_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678229_679303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679401_680352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680603_680810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680881_681493_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682047_682299_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682291_682981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683237_684188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033469562.1|684827_685313_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685299_686577_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686579_687998_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688026_689082_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689087_689330_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689452_690055_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|691532_692483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_024000668.1|692500_693148_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|693157_693409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|693471_693954_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|693955_694156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|694155_694551_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|694547_694946_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|694942_695365_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|695372_695873_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|696127_696646_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|696655_696985_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|697002_697293_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|697318_699931_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|699940_700300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|700367_700901_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|700897_701287_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|701279_705236_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	711402	765332	4128984	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|711402_713133_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713185_713614_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713616_714297_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714296_714755_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714791_715766_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715782_717099_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717130_717628_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717714_718404_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718403_719453_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719449_720244_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720412_720763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720738_721296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722425_723376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725513_726743_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726745_728188_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728292_729438_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729469_730267_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730291_731851_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|731847_734214_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|734392_735433_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735432_736125_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736268_736970_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736954_737332_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738063_739014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739173_740046_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740386_740605_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740644_742024_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742065_743463_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743502_745155_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_050846650.1|745158_746043_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746042_746984_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747062_748682_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748848_749664_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749731_750301_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750301_751252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751906_753004_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753037_754303_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_076879619.1|754460_755411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755654_756245_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756260_758705_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758824_759796_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759927_760452_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760411_761362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761583_763779_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|763851_764280_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|764381_765332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	816925	888938	4128984	transposase,holin	Acinetobacter_phage(20.0%)	60	NA	NA
WP_014486111.1|816925_817876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|817974_818631_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|818778_821487_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|821496_822516_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930048.1|822512_823463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|823561_824050_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|824046_824730_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|824759_828215_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|828250_829111_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|829239_830157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|830294_831275_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|831334_833125_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|833121_833898_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|833907_834426_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|834538_836809_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|837020_839252_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|839552_839882_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_003813916.1|839898_841383_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|841393_842896_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|842892_844905_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|844922_845231_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|845227_845875_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|845892_846381_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|846402_847476_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|847475_849803_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|849818_851186_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|851182_851677_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|851722_852979_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_023997298.1|852981_853602_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|853679_854156_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|854192_854552_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|854740_855898_-	porin	NA	NA	NA	NA	NA
WP_005012067.1|856210_857161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446246.1|857133_857733_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|857734_858169_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|858165_858600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|858583_859387_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|859403_860219_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_020699608.1|860215_861031_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|861177_861879_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861906_863865_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863947_864898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|865118_865787_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865910_867017_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|867029_870143_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|870139_871633_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|871647_872319_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930028.1|872362_872815_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872997_873645_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|873748_875797_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|875793_877806_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|877831_879166_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|879274_880267_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|880333_882418_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|882442_883414_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|883542_884574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|884577_885729_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930020.1|885932_886823_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886900_887725_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887921_888938_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	896572	959661	4128984	transposase,holin	Bacillus_phage(25.0%)	55	NA	NA
WP_010930018.1|896572_898804_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|899591_900038_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900059_900806_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900949_901927_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902560_903172_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903165_904383_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904523_905474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905470_906190_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906310_908470_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908560_908830_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908918_909125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909123_909651_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909669_910449_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910616_911633_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911705_912197_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912207_913923_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|915086_916037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916033_917866_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918264_918924_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919017_919164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919272_919440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|919451_920132_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920413_921130_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921144_922446_-	phospholipase	NA	NA	NA	NA	NA
WP_010930057.1|927710_929063_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929091_929613_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929609_931064_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931098_931347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931452_932328_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932353_933409_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933421_934213_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934245_935616_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936792_937743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937795_938017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938176_938389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938508_939627_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939723_939939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940132_940384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940496_941447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941443_941827_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941881_943696_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943845_944673_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944718_945699_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945695_945908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945904_947086_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_010930070.1|947249_947984_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
WP_010930071.1|947985_950598_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950733_952647_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953262_953673_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953770_954856_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954954_955905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955901_956876_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|957000_957912_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958188_958581_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958710_959661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1000627	1070903	4128984	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_010929632.1|1000627_1001644_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003152_1003725_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003784_1004516_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004567_1005485_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006292_1009472_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010921_1011173_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011318_1011933_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012119_1014180_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014309_1015161_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015157_1015784_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015780_1017535_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017827_1020533_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020545_1022207_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022219_1024010_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024231_1025407_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025449_1026400_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026498_1027239_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027433_1029470_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029487_1030498_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030615_1031809_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031838_1032612_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032608_1033799_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033824_1034763_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034759_1037108_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037262_1037904_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1038007_1039141_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039233_1039386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039417_1039966_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039984_1040470_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040647_1041586_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041588_1041906_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041951_1042896_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1042916_1044392_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1044576_1045227_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045280_1045616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045612_1046473_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046489_1046771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046844_1047108_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047351_1048302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048600_1049338_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049773_1050097_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050131_1050692_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050812_1051688_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051700_1052648_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052749_1053043_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053069_1055127_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055141_1055642_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055715_1057422_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058285_1059338_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059390_1059780_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059788_1060421_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1060520_1061537_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062367_1063375_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063371_1065015_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1065011_1065899_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066039_1066513_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066502_1067525_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067521_1068949_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_062826590.1|1069886_1070903_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1074656	1136717	4128984	transposase,tRNA,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1074656_1075793_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075789_1076863_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077020_1078457_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078547_1079189_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1079524_1080541_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1080873_1083606_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083672_1085094_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085357_1086074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086158_1086476_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086516_1086930_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086931_1087291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087333_1088878_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088961_1089792_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089826_1090981_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091023_1091896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092012_1094301_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095507_1095972_+	barstar family protein	NA	NA	NA	NA	NA
WP_010931070.1|1095998_1096949_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1097047_1097998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1098365_1099142_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099186_1100044_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100065_1101082_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101216_1102257_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102451_1104533_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104768_1106262_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106492_1107287_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107507_1108866_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108862_1109705_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109723_1111610_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111551_1111803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111847_1112480_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112498_1113101_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_076879620.1|1113252_1114203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114783_1115491_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115849_1116836_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116975_1117989_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117985_1118936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119048_1119507_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119543_1120857_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120874_1121246_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1121242_1122706_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122846_1123575_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123556_1126406_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1126618_1127569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127736_1128561_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128560_1129439_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130343_1131459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131487_1132282_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132278_1134144_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134222_1134855_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134851_1135154_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135196_1136717_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1154287	1221974	4128984	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1154287_1156084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156083_1157052_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157121_1157967_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158034_1158589_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158635_1159586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159684_1160317_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160486_1162769_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162923_1165620_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165745_1166234_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168644_1171515_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171560_1172775_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1173004_1174432_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174529_1175621_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175633_1176392_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176479_1177382_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177378_1178329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1178427_1179378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1179507_1180491_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1180545_1181268_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1182746_1184102_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1184182_1186558_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1186722_1188798_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1188859_1189654_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1189761_1190724_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1190711_1191467_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1191574_1193212_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1193279_1194017_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1194119_1194695_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1194867_1195404_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1195436_1195751_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1195766_1196612_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1196650_1198030_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1198107_1198989_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1199087_1200038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1200136_1201087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1201185_1202136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1202132_1202543_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1202650_1203505_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1203497_1204460_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1204505_1205630_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1205735_1206614_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1206738_1207518_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1207671_1209093_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1209527_1211225_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1211451_1212393_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1212719_1213466_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1213473_1214400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1214521_1215439_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1215478_1216432_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1216456_1217035_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1218708_1219317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1219394_1219748_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1219831_1220821_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023853639.1|1221023_1221974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1321110	1389597	4128984	transposase	Planktothrix_phage(33.33%)	56	NA	NA
WP_005012808.1|1321110_1322061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1322829_1323468_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1324357_1324804_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1324885_1325587_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1325587_1326355_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1326351_1327590_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1327589_1328516_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1328618_1329734_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1329749_1330700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1331053_1331635_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1331631_1332465_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1332675_1333989_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1334165_1335047_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1335066_1335918_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1335970_1337059_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1337169_1338297_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1338531_1339143_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1339241_1340192_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1340413_1340791_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1340938_1341436_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1341432_1341960_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1342093_1342909_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1342921_1344103_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1344150_1345044_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1345170_1345641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050846617.1|1345766_1346594_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|1347685_1348150_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1348161_1348863_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1348972_1349473_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1349555_1350734_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1352361_1352697_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1352884_1354333_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1354390_1354735_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1354841_1355381_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1355473_1356424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1356522_1356930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1357162_1357594_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1357775_1358180_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1359416_1359740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1359742_1360630_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1360662_1361088_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1361159_1361513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1361752_1362259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1362297_1363629_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1363688_1364504_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1364500_1365355_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1368417_1370961_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1372327_1374082_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1374078_1376199_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1376203_1378399_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1378395_1381737_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1384539_1385490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1385555_1385735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1385851_1386607_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1386593_1387739_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1388646_1389597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1450088	1505576	4128984	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1450088_1451039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1452240_1452687_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1452679_1454155_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1454151_1454907_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1454899_1455910_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1455899_1457576_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1457888_1458221_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1458234_1458630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1458639_1458966_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1458962_1459289_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1459215_1460238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1460234_1460585_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1460632_1461061_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1461068_1462442_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1462582_1462960_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1463222_1464530_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1464590_1465421_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1465417_1465906_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1465947_1467468_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1467511_1467988_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1468791_1471389_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1471418_1472240_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1472966_1473716_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1473899_1474778_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1474875_1475592_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1475606_1476167_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1476333_1477098_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1477117_1477975_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1477971_1479171_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1479210_1480545_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1480597_1482934_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1483059_1483623_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1483631_1484723_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1484794_1485250_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1485250_1486045_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1486041_1487223_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1487209_1487815_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1487811_1488585_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1488596_1489424_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1489585_1491949_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1492016_1492736_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1492859_1493285_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1493319_1494270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1494387_1495314_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1495379_1496537_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1496517_1496985_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1497132_1498083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1498099_1498534_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1498523_1498874_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1499070_1500225_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1500221_1501394_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1501441_1502335_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1502380_1502818_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1502877_1503567_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1503576_1504527_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1504625_1505576_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1600273	1660184	4128984	transposase,tRNA	Streptococcus_virus(11.11%)	52	NA	NA
WP_010930416.1|1600273_1600762_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1600879_1601458_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1601563_1601932_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1602030_1602981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1602987_1604100_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1604786_1605989_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1606024_1606171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1606192_1608853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1608865_1612270_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1612937_1615163_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1615209_1615536_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1615586_1616195_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1616293_1617244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1617313_1618078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1618074_1618611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1618777_1619629_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1619688_1620315_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010929591.1|1620311_1621262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1621360_1622473_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1622462_1623464_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1623569_1625081_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1625077_1626382_-	imelysin	NA	NA	NA	NA	NA
WP_033446227.1|1626493_1627051_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930432.1|1627321_1627876_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1628331_1628547_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1628801_1631399_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1631395_1632583_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1633240_1633855_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1633943_1635065_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1635082_1635988_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1636880_1637831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1638012_1638765_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1638833_1639493_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1639489_1640218_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1640230_1642510_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1642534_1642738_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1642779_1643412_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1643547_1644465_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1644461_1645175_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1645412_1646183_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1646187_1646787_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1647031_1648522_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1648580_1648865_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1649002_1649158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1649430_1650357_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1650493_1651234_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1651400_1652777_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1652958_1653864_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930447.1|1653946_1655638_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
WP_010930742.1|1655736_1656687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|1658493_1659135_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1659233_1660184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1705356	1760946	4128984	transposase	Brazilian_cedratvirus(25.0%)	46	NA	NA
WP_005013747.1|1705356_1706307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1706365_1707139_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1707131_1708688_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1708684_1709635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1710961_1711564_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1711803_1712505_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1712498_1713281_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1713465_1714416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1714514_1715252_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1715441_1716200_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1716246_1717236_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1717413_1718382_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1719921_1720890_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1720898_1721840_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1722313_1723324_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1723314_1724829_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1724825_1726172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1726174_1727209_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1727258_1728884_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1729436_1730387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1730491_1731439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1731492_1733307_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1733299_1733974_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1734103_1737178_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1737191_1737491_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1737805_1738429_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1738672_1739542_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1739519_1740464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1740549_1741476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1741588_1742368_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1742358_1743555_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1743585_1744536_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1744757_1745447_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1745511_1746267_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1746318_1747311_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1747320_1748274_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1748389_1749352_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1750753_1751182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1751178_1752129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1752422_1753145_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930505.1|1754773_1755124_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1756873_1757845_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1757858_1758572_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1758576_1759494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1759600_1759897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1759995_1760946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1768242	1831208	4128984	transposase,tRNA	Klosneuvirus(12.5%)	55	NA	NA
WP_005013747.1|1768242_1769193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1769236_1769779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1769876_1770725_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1770774_1771224_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1771220_1772222_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1772234_1773029_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1773077_1774979_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1774975_1775599_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1775725_1776850_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1777230_1778835_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1778990_1779767_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1779851_1780850_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1780846_1781620_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012067.1|1782604_1783555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1783592_1784180_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1784197_1784581_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1785940_1787233_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1787367_1788408_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1788505_1789522_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1789789_1790425_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1790562_1791321_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1791305_1792085_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1792102_1792987_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1792983_1793763_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1793789_1794467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1794755_1795508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1795626_1797027_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1797050_1797449_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1797624_1797825_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1797963_1798692_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1798825_1800241_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1800244_1801108_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1801120_1801870_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1802112_1804068_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1804049_1804718_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1805492_1806443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1806591_1806930_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1806987_1807149_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1807180_1807381_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1807646_1810220_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1810290_1812840_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_023852690.1|1815408_1815879_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1815970_1817122_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1817175_1817997_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1818035_1819265_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1819393_1819834_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1819944_1820895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1820891_1821365_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1821526_1822465_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1822466_1823675_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1823779_1824286_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1824288_1827150_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1827139_1828105_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_023853004.1|1828155_1830159_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1830257_1831208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1883506	1952918	4128984	protease,transposase,tRNA	Klosneuvirus(22.22%)	60	NA	NA
WP_005013747.1|1883506_1884457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1884581_1885391_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1885591_1886542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1887815_1889033_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1890089_1890992_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1891068_1891941_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1892071_1892440_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1892497_1893544_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1893739_1894996_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1895000_1896338_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1896487_1897444_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1897546_1898479_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1898594_1898915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446181.1|1898901_1899267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1899314_1900889_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1900941_1901886_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1901903_1902734_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1902726_1904361_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1904357_1905713_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1906619_1908197_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1908200_1909475_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1909572_1909947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1911662_1912796_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1912833_1913439_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1913435_1914254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1914325_1916950_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1916936_1917191_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1917257_1917839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1918142_1918403_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1918568_1919192_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1919191_1919965_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1919961_1921170_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1921195_1921669_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1921742_1922693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1922791_1924141_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1924906_1925662_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1925754_1928637_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1928959_1929385_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1929412_1930561_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1930557_1931064_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1931079_1932366_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1932415_1933711_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1933712_1934351_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1934356_1935514_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1935540_1936896_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1936899_1937970_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1938108_1938345_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1938432_1939539_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1939504_1940809_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1940827_1941727_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1941910_1943068_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1943144_1944440_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1944553_1945093_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1945370_1945583_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1945602_1947633_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1947658_1947853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1948318_1950601_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1951010_1951310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1951594_1952008_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1951967_1952918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	1964122	2024915	4128984	transposase	Klosneuvirus(16.67%)	58	NA	NA
WP_005012067.1|1964122_1965073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1965069_1966344_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1966447_1967641_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1967637_1968291_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1968287_1969724_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1969711_1970071_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_154585107.1|1970817_1970979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1971989_1973855_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1974112_1975633_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1975720_1976371_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1977319_1978615_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1978636_1979521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1979619_1980495_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1980484_1980841_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1980971_1981946_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1982075_1982255_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1982352_1982877_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1982887_1983724_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1983836_1984208_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1984204_1984756_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1984771_1986463_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1986511_1987192_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1987439_1987904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1988073_1989003_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1989015_1989663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1989736_1991554_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1991637_1992588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1993240_1994191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1994209_1994557_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1994585_1996025_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1996043_1996439_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1996613_1997222_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1997234_1998053_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1998004_1998979_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1999007_2000069_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2000065_2002282_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2002295_2002754_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2002911_2003256_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2003412_2004318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2004404_2005418_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2007397_2008414_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2008556_2009909_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2010083_2010380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2011517_2012468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879627.1|2012953_2013130_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|2013814_2014786_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|2014789_2015644_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|2015662_2016484_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|2016515_2017310_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|2017358_2017964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|2017921_2018755_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|2019040_2020546_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|2020587_2021370_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|2021439_2021886_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|2021882_2023109_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|2023101_2023506_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|2023665_2023968_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_010930742.1|2023964_2024915_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	2709575	2750244	4128984	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2709575_2710526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2710636_2710819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2710918_2711515_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2711698_2712790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2713289_2713700_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2713758_2714088_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2714105_2716523_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2716535_2717558_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2717632_2717992_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2718007_2718205_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2718540_2719491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2719685_2720135_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2720131_2721082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2721192_2722641_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2722755_2723001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2723140_2724091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2724335_2725049_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2725171_2725399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2725693_2726332_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2726440_2727475_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2727471_2728422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2728837_2729362_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2729365_2729635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2729833_2730895_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2730978_2732613_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2732614_2733418_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2733446_2734406_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2734409_2735924_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2735960_2736965_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2737396_2737867_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2737902_2738514_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2738544_2739168_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2739248_2740781_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2740815_2742033_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2742100_2743132_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2743128_2744298_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2744291_2744972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2745133_2745976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2746138_2747110_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2747281_2748160_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2748182_2749253_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2749293_2750244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	2775342	2831307	4128984	transposase,tRNA	Bacillus_virus(20.0%)	42	NA	NA
WP_010931070.1|2775342_2776293_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2776708_2779345_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2779341_2780466_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2780462_2781845_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005013747.1|2781896_2782847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810957.1|2783029_2783497_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2783618_2784287_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2784416_2785562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2785563_2787294_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2787411_2787720_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2787732_2788545_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2789425_2791591_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2791716_2792505_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2792544_2794149_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2794229_2794970_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2794977_2795472_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2795844_2796864_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2796860_2798243_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2798275_2799136_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931055.1|2800217_2801021_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2801079_2801517_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2801607_2802579_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2802617_2803562_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2803657_2804467_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2804543_2804918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2805024_2805717_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2805709_2806126_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2806236_2806869_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2806897_2807341_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2807362_2808454_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_162832304.1|2808508_2809300_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2809444_2810065_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2810204_2810678_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2811817_2812768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2812764_2820426_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2820666_2824713_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_023853219.1|2825070_2825607_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2825603_2826902_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2826981_2828010_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2828270_2829221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2829217_2830168_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2830356_2831307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	2836589	2893747	4128984	transposase	Synechococcus_phage(16.67%)	51	NA	NA
WP_010929591.1|2836589_2837540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853125.1|2837526_2838690_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
WP_010931075.1|2838701_2839208_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2839204_2839969_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2839984_2840269_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2840333_2841323_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2841494_2842424_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2842395_2843082_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2843115_2843661_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2843705_2844971_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2844967_2845870_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2847051_2847996_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2848090_2849608_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2849649_2851278_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2851385_2852267_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2855379_2855754_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2855778_2856117_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2856160_2857795_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2857833_2859180_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2859287_2860709_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2860778_2861363_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2861465_2862416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2862550_2863657_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2863667_2864765_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2864909_2866115_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2866121_2866643_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2866639_2867122_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2867127_2867379_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2867359_2867845_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2867980_2871442_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2871459_2872344_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2872353_2872785_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2873031_2873535_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2873612_2875013_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2875087_2875963_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2875959_2876967_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2877434_2877740_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2877830_2878421_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930320.1|2878611_2879628_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2879819_2882156_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2882238_2882673_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010929956.1|2882771_2883722_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2883820_2884771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2884767_2885562_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2885593_2886298_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2886372_2887173_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2887169_2887577_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2887573_2888215_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2888207_2890208_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2891468_2892800_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2892796_2893747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	2908222	2972824	4128984	protease,transposase	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
WP_005015810.1|2908222_2909173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2909503_2913325_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2913481_2914150_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2914154_2915828_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2915846_2917166_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2917170_2919486_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2919541_2921710_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2921706_2926887_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2926985_2927300_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2927527_2927773_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2927867_2928386_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2928485_2929691_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2929806_2931204_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2931320_2931899_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2931971_2933363_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2933530_2934481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2934761_2935382_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2935378_2935792_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2935788_2936832_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2936887_2937076_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2937085_2937850_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2937940_2938597_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2938688_2939447_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2939472_2941074_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2941274_2942279_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2942379_2942643_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|2942760_2943528_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2944127_2945078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|2947461_2948559_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2948630_2949581_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2949789_2950011_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2950224_2951631_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2951627_2952932_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2952928_2954116_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2954332_2954785_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2954787_2955252_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2955331_2957011_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2957115_2958093_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2958172_2959141_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2959161_2960535_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2960531_2961368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2961484_2961940_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2961955_2962228_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2962320_2962644_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2962691_2963072_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2963291_2964089_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2964245_2966108_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2966157_2967069_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2967073_2967340_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2967426_2968257_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2968431_2969397_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2969567_2970578_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2970725_2971877_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_005012067.1|2971873_2972824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	2979967	3035247	4128984	transposase	Planktothrix_phage(16.67%)	49	NA	NA
WP_010929591.1|2979967_2980918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2981038_2981935_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2984212_2986438_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2986602_2987691_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2987647_2988301_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2988348_2989146_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2989677_2990628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2990708_2991857_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2991913_2992864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2992962_2993268_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2993296_2993731_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2993732_2994977_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2994973_2995684_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2995698_2996610_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2996972_2997377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2997373_2997832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2997838_2998747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2998743_2999610_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2999596_3000424_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3000434_3001562_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3002639_3003878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3003919_3005182_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3005188_3005941_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3005992_3006178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3006453_3006918_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|3006997_3007609_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3007753_3009862_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|3009858_3010809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3010912_3011533_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3011636_3012377_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3013511_3014636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3014681_3015050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3015291_3016242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3017277_3017820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3018205_3019156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3019254_3020205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3020201_3021110_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3021236_3022073_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3022585_3023695_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3023756_3024707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3024899_3025682_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3025695_3026460_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3026472_3027819_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3027844_3028774_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3028889_3029795_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3029812_3031012_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3031084_3031777_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3031825_3034252_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3034296_3035247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	3147321	3211155	4128984	protease,transposase,tRNA	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3147321_3148272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3148417_3149542_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3149747_3150311_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3151305_3151788_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3151945_3153193_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3153412_3154069_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3154104_3155334_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010929591.1|3155601_3156552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3156643_3158059_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3158064_3159201_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3159270_3159642_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3159729_3160476_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3160512_3161577_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3161765_3162158_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3162167_3162596_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3162891_3163989_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3164330_3165695_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3165753_3166305_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3166318_3166993_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3168249_3169059_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3169061_3169898_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3169912_3170605_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3170616_3171006_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3171111_3172500_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3172616_3174113_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3174409_3175084_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3175182_3176133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3176129_3178589_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3178724_3180131_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3180134_3181322_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3181390_3181900_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3182101_3182554_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3183115_3186178_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3186483_3189411_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3189432_3190629_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3190946_3191474_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3191627_3192188_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3192195_3193650_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3193669_3194797_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3194926_3196102_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3196079_3196319_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3196599_3197103_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3197275_3198217_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3198228_3199326_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3200291_3201638_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3201647_3202097_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3202186_3202621_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3202699_3203248_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3203330_3204701_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3204711_3205305_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3205376_3207260_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3207297_3208197_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3208193_3209057_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3209155_3210106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3210204_3211155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	3404683	3458424	4128984	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3404683_3405634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3406038_3406683_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3406707_3407292_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3407392_3408010_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3408012_3409728_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3409724_3410033_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3410049_3410667_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3410711_3411014_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3411114_3411969_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3412156_3412381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3412550_3412823_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3413240_3413648_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3414017_3414812_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3414912_3416148_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3416216_3417233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3417244_3418621_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3418617_3419814_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3419810_3421349_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3421345_3422605_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3424545_3425496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3426262_3427357_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3427349_3428684_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3428637_3429321_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3429346_3430510_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3430506_3431508_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3431507_3432380_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3432376_3433126_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3433122_3433914_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3433910_3435050_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3435325_3436111_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3436144_3436927_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3436930_3437320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3438459_3439323_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3439358_3440447_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3440443_3441394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3441747_3444726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3445652_3446531_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3448479_3449430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3449426_3449894_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3449936_3450707_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3450727_3451528_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3451538_3452948_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3453042_3453828_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3454067_3455084_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3455191_3455584_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3455721_3456402_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3456406_3457378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3457473_3458424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	3464578	3523878	4128984	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3464578_3466342_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3466453_3467332_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3467444_3468260_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3468263_3468515_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3468599_3469616_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3469946_3470168_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931364.1|3472528_3473395_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3473943_3475152_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3475231_3476803_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3476920_3477856_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3478044_3478989_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3479556_3485274_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3485279_3486407_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3486462_3487089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3487360_3488377_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3488472_3489183_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3489179_3490169_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3490264_3491896_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3491898_3492636_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3492791_3493664_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3494013_3495153_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3495149_3495809_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3495880_3496513_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3496542_3497061_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3497071_3498181_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3498227_3499082_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3499083_3499986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3501208_3502159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3503915_3504905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3504901_3505060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3505080_3505869_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3505865_3506897_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3506915_3507479_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3507534_3509055_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3509318_3510023_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3510030_3510759_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3510873_3511248_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3511290_3512580_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3512576_3513746_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3513742_3514582_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_050846623.1|3514641_3515577_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3515589_3516540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3516638_3517601_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3517632_3517992_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3518116_3519019_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3519020_3520793_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3520827_3521604_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3522927_3523878_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017402	Bordetella pertussis strain 134 chromosome, complete genome	4128984	3538816	3596890	4128984	transposase,tRNA	Planktothrix_phage(12.5%)	45	NA	NA
WP_005012808.1|3538816_3539767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3539895_3541029_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3541072_3541978_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3541980_3543681_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3543677_3544598_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3544605_3545583_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852626.1|3545641_3546601_-	succinylglutamate desuccinylase/aspartoacylase	NA	NA	NA	NA	NA
WP_003815317.1|3548650_3548887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3549013_3549877_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3549965_3550787_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3550866_3551604_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3551600_3552593_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3552745_3553369_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3553413_3554562_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3556885_3557836_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3559221_3560172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3560468_3560966_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931404.1|3562796_3563663_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3563669_3564395_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023852623.1|3565573_3566344_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3566657_3567248_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3567281_3568610_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3568684_3569830_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3569941_3570940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3570902_3571337_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3572853_3573738_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3573734_3574940_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3574936_3575797_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3575909_3577700_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3577740_3578391_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3578406_3578715_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3578880_3580167_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3581600_3582551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3584502_3585717_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3585822_3586812_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3586808_3587417_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3587429_3588059_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3588055_3588676_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3588707_3589499_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3590350_3590806_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3590824_3591751_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3591804_3593091_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3594021_3594894_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3594890_3595841_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3595939_3596890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
