The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	0	59497	4386396	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	70134	123122	4386396	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	136206	208684	4386396	transposase,tRNA	Bacillus_phage(16.67%)	58	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|137575_139084_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|139830_143793_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|143845_144628_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|144715_145939_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|145922_146855_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|146860_147673_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|148985_149957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|150075_150858_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|151624_152605_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|152601_153330_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|153354_153786_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|153887_154763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|154814_156014_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|156118_156580_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|156685_158083_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|158079_158757_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|158812_160123_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|160134_160833_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|160996_161773_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|161938_162961_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|163189_163825_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_070797692.1|163830_165384_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	2.7e-34
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929577.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|176399_177350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178465_178993_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179084_179900_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179960_180695_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180732_182811_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183060_183333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183434_184520_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184523_186428_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|186424_190099_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190159_190723_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190730_191153_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|191180_191600_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191628_192075_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|192201_192699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192853_195124_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|195199_196405_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|196503_197454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197556_198192_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198188_199082_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199476_200577_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200658_201033_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201092_203957_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204101_204842_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204911_206123_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206151_207120_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|207733_208684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	217763	333433	4386396	transposase,tRNA,protease	uncultured_Caudovirales_phage(12.5%)	101	NA	NA
WP_033446404.1|217763_220559_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|221152_223996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|224166_224886_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|224924_225473_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|225627_226527_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|226551_227502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227720_228416_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228432_229845_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229957_231388_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231429_233343_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233661_234228_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234318_235320_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235434_236385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236471_237422_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237418_238369_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238467_239265_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240214_240625_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241646_242390_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242433_243477_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243647_245750_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247160_248117_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248135_248627_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248623_249979_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249979_250678_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250674_251376_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251628_252678_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252783_253725_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253721_255611_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|255715_256336_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|256478_257864_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257794_258331_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258482_259874_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259890_260871_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261006_261990_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262054_262954_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263060_264815_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264822_265947_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265960_266941_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267671_268622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269181_269727_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|269852_271430_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271445_272600_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272613_272739_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272735_274487_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274483_276163_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276225_276774_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277916_278195_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279238_280189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|280175_280391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280466_280628_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280635_280776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281294_281744_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281753_282365_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|282523_283372_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283397_284780_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284844_285486_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285625_286084_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286108_286885_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286938_288075_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288071_289022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|289120_289747_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|289769_290696_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|290704_292291_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|292287_293292_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|293491_294352_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|294383_295385_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|295455_296265_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|296342_298202_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|298330_299533_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|299646_300528_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|302030_302591_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|302650_303601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|303792_304080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|304168_305119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929727.1|305115_306114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815019.1|306156_306660_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929728.1|306663_307554_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_070805050.1|307776_308940_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815013.1|309036_309957_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815011.1|309960_310926_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815010.1|310922_311717_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_010929729.1|311710_312415_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_010929730.1|315778_316642_+	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929731.1|316644_317814_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814996.1|317854_319504_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_003814993.1|319505_319940_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814990.1|319964_320366_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929732.1|320459_322085_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_010929733.1|322324_323608_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_003814984.1|323624_324278_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929734.1|324274_325123_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814980.1|325239_325404_+	rubredoxin	NA	NA	NA	NA	NA
WP_010927118.1|325491_326097_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_010929735.1|326089_326491_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003820560.1|326504_327458_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929736.1|327454_328630_+	dihydroorotase	NA	NA	NA	NA	NA
WP_010929737.1|328749_329490_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929738.1|329526_330360_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929739.1|330356_331535_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_003814960.1|331631_332360_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_005013747.1|332482_333433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	357016	416484	4386396	transposase,tRNA	Streptococcus_phage(50.0%)	56	NA	NA
WP_005012067.1|357016_357967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|358078_358801_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|358899_359643_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|359873_361382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|361501_362233_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|362277_363738_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|363762_364242_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|364260_365271_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|365485_366226_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|366432_367443_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|367402_368353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|369401_370040_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|370076_371420_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|371842_372631_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|372768_373443_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|373556_375011_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|375013_376552_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|376554_376863_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|377093_378137_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|378225_379110_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|379096_379660_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|379673_381626_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|381622_382759_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|382784_383840_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|383850_385344_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|385556_386132_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|386181_386928_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|386927_387830_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|388091_388880_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|389020_389512_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|389508_390252_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|390248_390842_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|390850_391327_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|391451_392390_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|392386_392959_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|392955_393906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|394042_394960_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394956_395205_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|395201_396407_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|396479_397475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397497_398718_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398714_399359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|401089_401899_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|402203_403157_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_005013747.1|403255_404206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486049.1|404304_405288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|405214_405916_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|405964_406735_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|406731_407910_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|408077_409784_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|409780_410677_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|410717_412307_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|412356_413349_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|413417_414017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|414477_415458_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|415533_416484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	424295	479269	4386396	transposase	Bradyrhizobium_phage(20.0%)	44	NA	NA
WP_022997984.1|424295_425273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|425468_426674_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|426670_428182_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|428197_429511_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|429701_429881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|430290_431025_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|433469_434420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|434551_434950_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|435360_435831_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|435919_436264_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|436363_437764_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|439552_440071_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|440181_440937_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|441132_442365_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|442357_443143_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|443209_444181_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|444191_445169_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|445294_446467_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|446493_447522_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|447587_448781_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|450562_451513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|451611_452562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|452660_453566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|453741_453945_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|454455_454896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|454925_455585_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248869.1|455670_457287_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|457307_458771_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|458801_462188_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|462329_462734_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|462877_463864_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|463850_464132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|464877_466110_-	dehydratase	NA	NA	NA	NA	NA
WP_010929804.1|466109_466604_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|466735_467698_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|467675_468929_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|469050_470001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003821340.1|469997_470660_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_010929831.1|470667_471627_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_010929830.1|471783_472455_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_033446197.1|472457_473363_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247670.1|473930_477059_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_010929827.1|477134_478202_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|478318_479269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	593567	654757	4386396	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|593567_594518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|594993_595884_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|595880_596702_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|596900_597392_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|597410_598484_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|598530_599634_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|599709_600330_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|600350_600860_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|600914_601166_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|601229_602363_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|602370_602757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|602753_605273_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|605701_606040_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|606036_606543_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|606604_607405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|607515_608457_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|608550_610086_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|611765_613616_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|613619_614453_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|614452_615394_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|615645_616617_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|616758_619047_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|619353_620262_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|620316_621282_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|621356_623018_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|623089_623800_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|623766_623931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|623948_624899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|625597_625981_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|626038_626641_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|626658_627060_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|627175_628087_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|628083_628665_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|629468_630194_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|630234_631284_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|631431_632010_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|632396_633374_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|633467_637862_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|638062_638911_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|639069_639882_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|639937_640888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|640986_641787_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|641848_642232_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|642243_643596_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|643883_644213_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|644215_644965_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|645147_646068_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|646114_646327_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|646349_646772_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|646788_647889_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|647985_649503_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|649578_650418_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|650439_651312_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_070797680.1|651402_652497_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|652790_653741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|653815_654757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	660081	707321	4386396	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|660081_661107_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|661147_661387_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|661456_663046_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|663045_663594_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|663674_664247_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|664265_665177_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|665250_666219_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|666341_667415_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|667419_669240_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|669316_670267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|670355_670691_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|670824_671475_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|671496_672915_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|672984_673740_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|673708_674467_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|674477_675359_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|675375_676083_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|676085_676844_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|677053_678796_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|678788_679313_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|679352_680147_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|680314_681388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681486_682437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|682688_682895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|682966_683578_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|684132_684384_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|684376_685066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|685083_685305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|685322_686273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|686912_687398_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|687384_688662_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|688664_690083_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|690111_691167_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|691172_691415_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|691537_692140_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|693617_694568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|695242_695494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|695556_696039_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|696040_696241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|696240_696636_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|696632_697031_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|697027_697450_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|697457_697958_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|698212_698731_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|698740_699070_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|699087_699378_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|699403_702016_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|702025_702385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|702452_702986_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|702982_703372_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|703364_707321_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 9
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	713487	767417	4386396	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|713487_715218_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|715270_715699_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|715701_716382_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|716381_716840_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|716876_717851_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|717867_719184_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|719215_719713_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|719799_720489_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|720488_721538_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|721534_722329_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|722497_722848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|722823_723381_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|724510_725461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|727598_728828_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|728830_730273_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|730377_731523_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|731554_732352_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|732376_733936_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|733932_736299_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|736477_737518_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|737517_738210_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|738353_739055_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|739039_739417_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|740148_741099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|741258_742131_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|742471_742690_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|742729_744109_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|744150_745548_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|745587_747240_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|747243_748128_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|748127_749069_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|749147_750767_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|750933_751749_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|751816_752386_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|752386_753337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|753991_755089_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|755122_756388_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|756545_757496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|757739_758330_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|758345_760790_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|760909_761881_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|762012_762537_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|762496_763447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|763668_765864_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|765936_766365_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|766466_767417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1030518	1085610	4386396	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1030518_1031469_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1031567_1032308_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1032502_1034539_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1034556_1035567_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1035684_1036878_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1036907_1037681_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1037677_1038868_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1038893_1039832_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1039828_1042177_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1042331_1042973_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1043076_1044210_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1044302_1044455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1044486_1045035_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1045053_1045539_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1045716_1046655_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1046657_1046975_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1047020_1047965_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1049645_1050296_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1050349_1050685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1050681_1051542_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1051558_1051840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1051913_1052177_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1052420_1053371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1053669_1054407_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1054842_1055166_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1055200_1055761_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1055881_1056757_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1056769_1057717_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1057818_1058112_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1058138_1060196_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1060210_1060711_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1060784_1062491_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1063354_1064407_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1064459_1064849_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1064857_1065490_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1065589_1066606_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1067436_1068444_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1068440_1070084_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1070080_1070968_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1071108_1071582_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1071571_1072594_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1072590_1074018_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1074955_1075972_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1076304_1077240_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1077289_1079170_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1079236_1079581_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1079725_1080862_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1080858_1081932_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1082089_1083526_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1083616_1084258_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1084593_1085610_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1091585	1163605	4386396	transposase,tRNA,holin	Planktothrix_phage(18.18%)	57	NA	NA
WP_003819794.1|1091585_1091999_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1092000_1092360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1092402_1093947_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1094030_1094861_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1094895_1096050_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1096092_1096965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1097081_1099370_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1100576_1101041_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1101067_1102018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157734659.1|1102035_1102173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1102385_1103162_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1103206_1104064_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1104085_1105102_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1105236_1106277_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1106471_1108553_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1108788_1110282_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1110512_1111307_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1111527_1112886_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1112882_1113725_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1113743_1115630_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1115571_1115823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1115867_1116500_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1116518_1117121_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1117272_1118223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1118803_1119511_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1119869_1120856_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1120995_1122009_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1122005_1122956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1122973_1123114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1123068_1123527_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1123563_1124877_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1124894_1125266_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1125262_1126726_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1126866_1127595_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1127576_1130426_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930184.1|1131755_1132580_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1132579_1133458_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1134362_1135478_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1135506_1136301_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1136297_1138163_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1138241_1138874_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1138870_1139173_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1139215_1140736_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1140742_1141498_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1141527_1142632_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1142734_1144435_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_023853218.1|1144416_1145358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1145403_1146684_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1146676_1147372_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1147405_1148233_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1148514_1151745_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1152480_1156407_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1158306_1160103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1160102_1161071_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1161140_1161986_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1162053_1162608_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1162654_1163605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1323057	1391544	4386396	transposase	Planktothrix_phage(33.33%)	56	NA	NA
WP_005012808.1|1323057_1324008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1324776_1325415_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1326304_1326751_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1326832_1327534_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1327534_1328302_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1328298_1329537_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1329536_1330463_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1330565_1331681_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1331696_1332647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1333000_1333582_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1333578_1334412_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1334622_1335936_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_070797684.1|1336112_1336994_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1337013_1337865_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1337917_1339006_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1339116_1340244_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1340478_1341090_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1341188_1342139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1342360_1342738_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1342885_1343383_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1343379_1343907_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1344040_1344856_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1344868_1346050_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1346097_1346991_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1347117_1347588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1347713_1348541_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|1349632_1350097_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1350108_1350810_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1350919_1351420_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1351502_1352681_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1354308_1354644_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1354831_1356280_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1356337_1356682_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1356788_1357328_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1357420_1358371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1358388_1358628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1359109_1359541_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1359722_1360127_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1361363_1361687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1361689_1362577_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1362609_1363035_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1363106_1363460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1363699_1364206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1364244_1365576_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1365635_1366451_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1366447_1367302_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1370364_1372908_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1374274_1376029_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1376025_1378146_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1378150_1380346_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1380342_1383684_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1386486_1387437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1387502_1387682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1387798_1388554_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1388540_1389686_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1390593_1391544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1417547	1471117	4386396	transposase	Planktothrix_phage(33.33%)	49	NA	NA
WP_010930208.1|1417547_1418498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1418596_1419367_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1419363_1420044_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1420110_1420899_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1421145_1422162_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1422467_1423622_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1428127_1428610_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1428627_1428918_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1429044_1429755_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1429938_1430346_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1430358_1430778_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1430825_1431530_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1431595_1433017_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1433055_1433820_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1433863_1434649_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1434648_1435338_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1435340_1436474_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1436491_1437514_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1437583_1439230_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1439263_1440796_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1440874_1442695_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1442815_1444435_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1444613_1446056_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1446272_1447289_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1447335_1448124_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1448146_1448416_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1448432_1449167_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1449235_1449577_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1449587_1450088_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1450080_1451091_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1451093_1451666_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1452035_1452986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1453754_1454393_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1455282_1455729_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1455810_1456512_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1456512_1457280_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1457276_1458515_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1458514_1459441_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1459543_1460659_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1460674_1461625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1461978_1462560_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1462556_1463390_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1463600_1464914_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_070797684.1|1465090_1465972_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1465991_1466843_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1466895_1467984_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1468094_1469222_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1469456_1470068_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1470166_1471117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1515464	1581964	4386396	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1515464_1516415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1516480_1516660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1516776_1517532_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1517518_1518664_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1519571_1520522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1520709_1521912_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1521908_1522667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1523060_1523693_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1524648_1527249_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1527236_1530656_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1530663_1531569_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1531707_1532286_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1532282_1533194_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1533207_1533888_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1534089_1536129_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1536147_1537134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1537159_1537957_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1537953_1539147_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1539143_1540106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1540123_1541164_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1541151_1541760_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1543348_1544344_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1544363_1545542_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1545552_1546470_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1546525_1547476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1547574_1548345_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1548341_1549022_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1549088_1549877_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1550123_1551140_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1551445_1552600_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1557105_1557588_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1557605_1557896_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1558022_1558733_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1558916_1559324_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1559336_1559756_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1559803_1560508_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1560573_1561995_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1562033_1562798_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1562841_1563627_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1563626_1564316_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1564318_1565452_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1565469_1566492_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1566561_1568208_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1568241_1569774_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1569852_1571673_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1571793_1573413_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1573591_1575034_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1575250_1576267_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1576313_1577102_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1577124_1577394_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1577410_1578145_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1578213_1578555_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1578565_1579066_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1579058_1580069_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1580071_1580644_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1581013_1581964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1644442	1710942	4386396	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1644442_1645393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1645458_1645638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1645754_1646510_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1646496_1647642_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1648549_1649500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1649687_1650890_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1650886_1651645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1652038_1652671_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1653626_1656227_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1656214_1659634_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1659641_1660547_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1660685_1661264_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1661260_1662172_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1662185_1662866_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1663067_1665107_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1665125_1666112_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1666137_1666935_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1666931_1668125_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1668121_1669084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1669101_1670142_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1670129_1670738_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1672326_1673322_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1673341_1674520_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1674530_1675448_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1675503_1676454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1676552_1677323_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1677319_1678000_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1678066_1678855_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1679101_1680118_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1680423_1681578_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1686083_1686566_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1686583_1686874_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1687000_1687711_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1687894_1688302_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1688314_1688734_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1688781_1689486_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1689551_1690973_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1691011_1691776_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1691819_1692605_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1692604_1693294_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1693296_1694430_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1694447_1695470_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1695539_1697186_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1697219_1698752_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1698830_1700651_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1700771_1702391_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1702569_1704012_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1704228_1705245_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1705291_1706080_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1706102_1706372_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1706388_1707123_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1707191_1707533_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1707543_1708044_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1708036_1709047_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1709049_1709622_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1709991_1710942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	1739113	1777703	4386396	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1739113_1740448_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1740500_1742837_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1742962_1743526_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1743534_1744626_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1744697_1745153_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1745153_1745948_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1745944_1747126_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1747112_1747718_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1747714_1748488_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1748499_1749327_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1749488_1751852_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1751919_1752639_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1752762_1753188_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1753222_1754173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1754290_1755217_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1755282_1756440_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1756420_1756888_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1757035_1757986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1758002_1758437_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1758426_1758777_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1758973_1760128_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1760124_1761297_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1761344_1762238_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1762283_1762721_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1762780_1763470_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1763479_1764430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1764528_1765479_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1765577_1766540_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1766766_1767921_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1767931_1771174_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1772195_1772840_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_070797685.1|1772850_1773750_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1773797_1774883_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1774879_1776574_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_162268680.1|1776570_1776735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1776752_1777703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2152830	2227690	4386396	transposase,tRNA	Bacillus_virus(33.33%)	60	NA	NA
WP_023997643.1|2152830_2153781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|2153841_2154876_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|2154975_2156241_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|2156634_2157651_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|2157994_2158495_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|2158536_2158851_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|2158860_2159802_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|2159798_2160323_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|2160325_2161594_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|2161622_2162606_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|2162602_2163412_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|2163408_2164212_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|2164226_2164994_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|2165081_2165720_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|2165724_2166678_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|2166789_2167914_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|2169551_2170379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|2170375_2171179_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|2171175_2172267_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|2172673_2173702_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|2173860_2174565_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|2174573_2176694_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930645.1|2176694_2177651_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|2177719_2178112_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|2178115_2178592_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|2178605_2178941_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|2178947_2179397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446196.1|2179610_2179904_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|2179956_2181069_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|2181073_2181712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|2181692_2182952_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|2182955_2185061_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|2185066_2187052_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|2187260_2187497_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|2187841_2188327_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|2188694_2189645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930653.1|2189691_2190900_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930654.1|2190991_2192941_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930655.1|2192937_2193714_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	1.3e-13
WP_010930656.1|2193710_2194481_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.2	3.3e-09
WP_029443796.1|2196924_2197413_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930658.1|2197522_2198674_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010929891.1|2198974_2199727_+	maleate isomerase	NA	NA	NA	NA	NA
WP_010929892.1|2200593_2201625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929893.1|2201640_2202258_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010930525.1|2202449_2203466_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_061363663.1|2205538_2206945_+	ferric reductase	NA	NA	NA	NA	NA
WP_010930660.1|2206955_2209064_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930661.1|2209818_2210784_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853569.1|2212489_2213758_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853578.1|2214067_2214724_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930663.1|2214825_2216253_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
WP_010930664.1|2216262_2217834_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930665.1|2218016_2218970_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_010930666.1|2219031_2220258_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930667.1|2220270_2221095_+	NAD-dependent protein deacetylase	NA	NA	NA	NA	NA
WP_010930668.1|2221163_2222015_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_010930669.1|2222192_2223662_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930670.1|2223741_2225007_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA	NA
WP_005013747.1|2226739_2227690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2314627	2387843	4386396	transposase	Bacillus_virus(20.0%)	59	NA	NA
WP_010929591.1|2314627_2315578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2316029_2317031_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2317203_2318061_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2318057_2319320_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2319420_2319795_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2319867_2321055_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2321139_2321910_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2322023_2322788_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2322738_2324040_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_023853104.1|2324048_2324843_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2326587_2327559_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2327715_2328228_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2328386_2329361_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2330361_2331156_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2331181_2331988_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2332098_2332689_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2332699_2333878_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2333980_2334355_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2334607_2335939_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003810344.1|2340729_2341476_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2341560_2342022_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2342059_2343118_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2343080_2344910_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2344949_2345522_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2346946_2347768_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2348086_2349409_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2349768_2350404_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2350363_2351314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2352184_2353057_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2353134_2354274_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2354632_2355889_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2355894_2356422_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2356426_2357245_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2357244_2357967_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2357988_2358303_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2358320_2359469_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2359499_2360375_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2360371_2361691_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2361763_2362960_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2362970_2364458_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2367052_2367952_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2368089_2369055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2369153_2370104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2370325_2371276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2371272_2371575_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2371734_2372139_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2372131_2373358_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2373354_2373801_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2373870_2374653_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2374694_2376200_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2376485_2377319_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2378756_2379578_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2379596_2380451_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2380454_2381426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2382110_2382287_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2382772_2383723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2384860_2385157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2385331_2386684_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2386826_2387843_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2401049	2445372	4386396	transposase	Bacillus_phage(25.0%)	45	NA	NA
WP_010929577.1|2401049_2402000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2402652_2403603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2403686_2405504_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2405577_2406225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2406237_2407167_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2407336_2407801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2408048_2408729_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2408777_2410469_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2410484_2411036_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2411032_2411404_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2411516_2412353_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2412363_2412888_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2412985_2413165_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2413294_2414269_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2414399_2414756_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2414745_2415621_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2415719_2416604_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2416625_2417921_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2418869_2419520_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2419607_2421128_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2421385_2423251_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2424296_2425247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2425264_2425405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2426219_2426579_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2426566_2428003_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2427999_2428653_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2428649_2429843_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2429946_2431221_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2431217_2432168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2432185_2432440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2432334_2433309_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2433305_2433449_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2435070_2435733_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2435735_2435912_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2435908_2436847_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2436938_2438429_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2438514_2438667_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2438680_2438920_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2439015_2439759_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2439791_2440292_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2440390_2441314_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2441310_2442072_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2442087_2443173_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2443372_2444323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2444421_2445372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2455612	2514882	4386396	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2455612_2456512_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2456530_2457835_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2457800_2458907_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2458994_2459231_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2459369_2460440_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2460443_2461799_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2461825_2462983_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2462988_2463627_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2463628_2464924_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2464973_2466260_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2466275_2466782_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2466778_2467927_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2467954_2468380_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2468702_2471585_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2471677_2472433_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2473198_2474548_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2474646_2475597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2475695_2476646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2476719_2477193_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2477218_2478427_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2478423_2479197_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2479196_2479820_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2479985_2480246_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2480549_2481131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2481197_2481452_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2481438_2484063_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2484134_2484953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2484949_2485555_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2485592_2486726_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2488441_2488816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2488913_2490188_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2490191_2491769_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2492675_2494031_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2494027_2495662_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2495654_2496485_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2496502_2497447_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2497499_2499074_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446181.1|2499121_2499487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2499473_2499794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2499909_2500842_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2500944_2501901_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2502050_2503388_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2503392_2504649_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2504844_2505891_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2505948_2506317_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2506447_2507320_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2507396_2508299_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2509355_2510573_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2511846_2512797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2512997_2513807_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2513931_2514882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2566131	2629097	4386396	transposase,tRNA	Synechococcus_phage(12.5%)	55	NA	NA
WP_010929591.1|2566131_2567082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853004.1|2567180_2569184_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2569234_2570200_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2570189_2573051_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2573053_2573560_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2573664_2574873_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2574874_2575813_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2575974_2576448_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2576444_2577395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2577505_2577946_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2578074_2579304_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2579342_2580164_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2580217_2581369_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2581460_2581931_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2584499_2587049_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2587119_2589693_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2589958_2590159_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2590190_2590352_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2590409_2590748_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2590896_2591847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2592621_2593290_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2593271_2595227_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2595469_2596219_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2596231_2597095_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2597098_2598514_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2598647_2599376_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2599514_2599715_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2599890_2600289_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2600312_2601713_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2601831_2602584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2602872_2603550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2603576_2604356_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2604352_2605237_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2605254_2606034_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2606018_2606777_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2606914_2607550_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2607817_2608834_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2608931_2609972_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2610106_2611399_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2612758_2613142_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2613159_2613747_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2613784_2614735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2615719_2616493_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2616489_2617488_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2617572_2618349_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2618504_2620109_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2620489_2621614_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2621740_2622364_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2622360_2624262_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2624310_2625105_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2625117_2626119_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2626115_2626565_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2626614_2627463_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2627560_2628103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2628146_2629097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2636393	2691984	4386396	transposase	uncultured_Caudovirales_phage(25.0%)	47	NA	NA
WP_010929588.1|2636393_2637344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2637442_2637739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2637845_2638763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2638767_2639481_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2639494_2640466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2642215_2642566_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2642569_2643757_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2644195_2644918_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2645211_2646162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2646158_2646587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2647988_2648951_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2649066_2650020_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2650029_2651022_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2651073_2651829_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2651893_2652583_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2652804_2653755_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2653785_2654982_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2654972_2655752_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2655864_2656791_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2656876_2657821_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2657798_2658668_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2658911_2659535_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247905.1|2659849_2660149_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2660162_2663237_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2663366_2664041_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2664033_2665848_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2665901_2666849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2666953_2667904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_070797687.1|2668456_2670082_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	49.4	3.3e-136
WP_010930475.1|2670131_2671166_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2671168_2672515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2672511_2674026_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2674016_2675027_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2675500_2676442_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2676450_2677419_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2678958_2679927_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2680104_2681094_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2681140_2681899_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2682088_2682826_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2682924_2683875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2684059_2684842_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2684835_2685537_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2685776_2686379_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2687705_2688656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_070797688.1|2688652_2690209_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2690201_2690975_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2691033_2691984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2727933	2794263	4386396	transposase	Ectocarpus_siliculosus_virus(11.11%)	56	NA	NA
WP_005012067.1|2727933_2728884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2728903_2729809_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2729886_2730585_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2730744_2731689_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2731698_2733186_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2733185_2734253_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2734316_2735729_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2735914_2737135_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2737156_2738107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|2738205_2738847_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2738973_2740776_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2742427_2743333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2743514_2744891_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2745057_2745798_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2745934_2746861_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2747133_2747289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2747426_2747711_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2747769_2749260_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2749504_2750104_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2750108_2750879_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2751116_2751830_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2751826_2752744_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2752879_2753512_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2753553_2753757_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2753781_2756061_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2756073_2756802_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2756798_2757458_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2757526_2758279_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2758460_2759411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2760303_2761209_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994740.1|2761226_2762348_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2762436_2763051_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2763710_2764898_-	cupin	NA	NA	NA	NA	NA
WP_033446228.1|2764894_2767492_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2767746_2767962_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2768417_2768972_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_033446227.1|2769242_2769800_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_023853587.1|2769911_2771216_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2771212_2772724_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2772829_2773831_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2773820_2774933_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2775031_2775982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2775978_2776605_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2776664_2777516_+	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_033446226.1|2777682_2778219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2778215_2778980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2779049_2780000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2780098_2780707_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2780757_2781084_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2781130_2783356_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2784023_2787428_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2787440_2790101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004568212.1|2790122_2790269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2790304_2791507_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2792193_2793306_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2793312_2794263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2822308	2886264	4386396	transposase,tRNA	Salmonella_phage(16.67%)	60	NA	NA
WP_005012067.1|2822308_2823259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2823357_2824128_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2824124_2824796_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2824792_2825434_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2825446_2826367_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2826527_2827688_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2827729_2828680_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2829278_2829503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162832303.1|2829667_2831401_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2831483_2831753_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2831868_2832267_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2832277_2833234_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2833370_2833916_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2833936_2835886_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2836273_2837050_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2837055_2837448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2837869_2838820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2838816_2839914_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005012067.1|2839945_2840896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2840994_2841777_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2841865_2843092_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2843817_2845203_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2845221_2845827_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2845823_2847680_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2847676_2848477_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2848491_2849685_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2849752_2850727_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2850849_2852073_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2852183_2854388_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2854682_2855342_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2855349_2855556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2855894_2856650_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2856665_2856827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2856920_2857436_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2857708_2858026_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2858213_2858450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2858740_2860096_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2860142_2861483_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2861584_2862217_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2862216_2864586_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2864618_2865578_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2865564_2866251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2866247_2866580_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2866695_2867646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2867642_2869709_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2869708_2869981_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2870675_2870765_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2870764_2872549_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2872572_2874738_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2874748_2875348_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2878169_2878865_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2878873_2879824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2879922_2881164_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2881313_2882294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2882492_2883749_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2883951_2884377_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2884418_2884781_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2884793_2885147_-	cytochrome c	NA	NA	NA	NA	NA
WP_162497923.1|2885143_2885296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2885313_2886264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	2965941	3006610	4386396	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2965941_2966892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2967002_2967185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2967284_2967881_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2968064_2969156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2969655_2970066_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2970124_2970454_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2970471_2972889_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2972901_2973924_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2973998_2974358_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2974373_2974571_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2974906_2975857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2976051_2976501_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2976497_2977448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2977558_2979007_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2979121_2979367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2979506_2980457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2980701_2981415_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2981537_2981765_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2982059_2982698_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2982806_2983841_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2983837_2984788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2985203_2985728_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2985731_2986001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2986199_2987261_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2987344_2988979_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2988980_2989784_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2989812_2990772_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2990775_2992290_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2992326_2993331_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2993762_2994233_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2994268_2994880_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2994910_2995534_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2995614_2997147_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2997181_2998399_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2998466_2999498_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2999494_3000664_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|3000657_3001338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|3001499_3002342_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|3002504_3003476_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|3003647_3004526_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|3004548_3005619_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|3005659_3006610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3062075	3134946	4386396	transposase,tRNA	Moraxella_phage(14.29%)	59	NA	NA
WP_003810909.1|3062075_3062492_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|3062602_3063235_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|3063263_3063707_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|3063728_3064820_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_162832304.1|3064874_3065666_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|3065810_3066431_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|3066570_3067044_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3068183_3069134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|3069130_3076792_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|3077032_3081079_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_023853219.1|3081436_3081973_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|3081969_3083268_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|3083347_3084376_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|3084636_3085587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3085583_3086534_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|3086851_3087457_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|3087510_3088824_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|3088898_3089369_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|3089368_3090157_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|3090167_3091820_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|3091907_3092858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853125.1|3092844_3094008_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
WP_010931075.1|3094019_3094526_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|3094522_3095287_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|3095302_3095587_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|3095651_3096641_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|3096812_3097742_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|3097713_3098400_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|3098433_3098979_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|3099023_3100289_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|3100285_3101188_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|3102369_3103314_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|3103408_3104926_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|3104967_3106596_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|3106703_3107585_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|3110697_3111072_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|3111096_3111435_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|3111478_3113113_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|3113151_3114498_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|3114605_3116027_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|3116096_3116681_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|3116783_3117734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|3117868_3118975_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|3118985_3120083_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|3120227_3121433_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|3121439_3121961_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|3121957_3122440_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|3122445_3122697_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|3122677_3123163_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|3123298_3126760_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|3126777_3127662_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|3127671_3128103_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|3128349_3128853_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|3128930_3130331_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|3130405_3131281_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|3131277_3132285_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|3132752_3133058_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|3133148_3133739_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|3133929_3134946_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3138089	3204898	4386396	transposase,protease	uncultured_Mediterranean_phage(28.57%)	51	NA	NA
WP_010929956.1|3138089_3139040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3139138_3140089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|3140085_3140880_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|3140911_3141616_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|3141690_3142491_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|3142487_3142895_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|3142891_3143533_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|3143525_3145526_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|3146786_3148118_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|3148114_3149065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|3150771_3151038_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|3151745_3152084_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_077069211.1|3153412_3156397_-	autotransporter BapC	NA	NA	NA	NA	NA
WP_010931107.1|3156635_3157238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|3157334_3158624_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|3158681_3159413_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|3159409_3160213_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|3160209_3161298_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3161294_3162224_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|3162372_3163518_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|3163539_3164490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|3164507_3164666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|3164820_3168642_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|3168798_3169467_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|3169471_3171145_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|3171163_3172483_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|3172487_3174803_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|3174858_3177027_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|3177023_3182204_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|3182302_3182617_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|3182844_3183090_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|3183184_3183703_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|3183802_3185008_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|3185123_3186521_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|3186637_3187216_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|3187288_3188680_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|3188847_3189798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|3190078_3190699_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|3190695_3191109_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|3191105_3192149_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|3192204_3192393_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|3192402_3193167_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3193257_3193914_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3194005_3194764_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3194789_3196391_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3196591_3197596_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3197696_3197960_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|3198077_3198845_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3199444_3200395_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|3202778_3203876_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|3203947_3204898_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3235284	3274473	4386396	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|3235284_3236235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|3236252_3236402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|3236355_3237252_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3239529_3241755_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3241919_3243008_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3242964_3243618_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3243665_3244463_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3244994_3245945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3246025_3247174_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3247230_3248181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3248279_3248585_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3248613_3249048_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3249049_3250294_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3250290_3251001_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3251015_3251927_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3252289_3252694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3252690_3253149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3253155_3254064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3254060_3254927_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3254913_3255741_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3255751_3256879_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3257956_3259195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3259236_3260499_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3260505_3261258_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3261309_3261495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3261770_3262235_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|3262314_3262926_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3263070_3265179_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3265175_3266126_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3266229_3266850_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3266953_3267694_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3268828_3269953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3269998_3270367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3270608_3271559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3272594_3273137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|3273334_3273505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3273522_3274473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3463423	3536410	4386396	transposase,tRNA,holin	Xanthomonas_phage(14.29%)	60	NA	NA
WP_005012067.1|3463423_3464374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3464382_3464931_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3464927_3465536_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852720.1|3465718_3466177_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3466195_3467455_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3467507_3468320_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3468434_3468989_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_023998380.1|3468998_3469988_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3470167_3470887_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3470903_3473639_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3473818_3474805_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3474933_3475341_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3475452_3476376_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3476604_3477789_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3477977_3479204_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3479208_3480030_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3480042_3480993_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3480989_3482396_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3482392_3483466_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3483462_3484656_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3484652_3486185_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3486181_3487351_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3487340_3490178_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3490174_3491905_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3491901_3492180_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3492179_3493274_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3493282_3493711_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3494513_3496322_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3496361_3497441_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3497437_3498631_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3498780_3499059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995307.1|3499387_3499753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3506504_3506981_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3507133_3508246_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3508313_3508874_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3508897_3509230_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3509213_3510902_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3511021_3511810_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3512517_3513468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3513912_3514224_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3514223_3514754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162268687.1|3514710_3514899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3514916_3515867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3516156_3516621_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3516635_3518141_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3518394_3520002_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3520057_3520963_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3521403_3522354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|3522492_3523245_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|3523519_3525208_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_023995245.1|3525296_3526487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931274.1|3526501_3527596_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|3527592_3529656_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|3529731_3530412_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|3530689_3532063_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|3532064_3533084_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|3533147_3534119_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|3534183_3535134_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|3535232_3536075_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|3536074_3536410_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 31
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3554833	3598096	4386396	transposase,protease	Erwinia_phage(50.0%)	36	NA	NA
WP_010931291.1|3554833_3555373_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|3555394_3556729_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|3556742_3557048_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|3557472_3558054_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3558135_3559086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|3559184_3560135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3560447_3561926_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3561932_3563042_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3563053_3563734_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3563755_3564511_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3564646_3565531_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3565618_3566200_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3566460_3566760_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3566911_3567391_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3568110_3569547_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931297.1|3569543_3569972_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3570062_3571013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3571540_3572314_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3572446_3573457_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3573608_3575264_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3575318_3575660_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3575673_3577113_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3577245_3578061_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3578024_3578237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3578254_3579205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247274.1|3580598_3581540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3581766_3582507_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3582592_3583543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3583560_3583716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3584984_3586556_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3586888_3588742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3588786_3591351_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3591769_3592720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3592818_3593769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3596634_3597129_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3597145_3598096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3659999	3780243	4386396	transposase,tRNA	Acinetobacter_phage(20.0%)	101	NA	NA
WP_023995489.1|3659999_3660950_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3661354_3661999_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3662023_3662608_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3662708_3663326_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3663328_3665044_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3665040_3665349_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3665365_3665983_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3666027_3666330_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3666430_3667285_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3667472_3667697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3667866_3668139_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3668556_3668964_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3669333_3670128_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3670228_3671464_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3671532_3672549_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3672560_3673937_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3673933_3675130_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3675126_3676665_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3676661_3677921_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3679861_3680812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3681578_3682673_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3682665_3684000_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3683953_3684637_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3684662_3685826_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3685822_3686824_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3686823_3687696_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3687692_3688442_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3688438_3689230_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3689226_3690366_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3690641_3691427_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3691460_3692243_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3692246_3692636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3693775_3694639_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3694674_3695763_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3695759_3696710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3697063_3700042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3700968_3701847_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3702913_3703864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3704844_3705795_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3705791_3706259_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3706301_3707072_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3707092_3707893_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3707903_3709313_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3709407_3710193_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3710432_3711449_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3711556_3711949_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3712086_3712767_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3712771_3713743_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3713838_3714789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3716293_3716995_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3716994_3718419_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3718435_3719491_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3719487_3720828_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3720943_3722707_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3722818_3723697_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3723809_3724625_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3724628_3724880_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3724964_3725981_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3726311_3726533_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931364.1|3728893_3729760_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3730308_3731517_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3731596_3733168_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3733285_3734221_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3734409_3735354_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3735921_3741639_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3741644_3742772_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3742827_3743454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3743725_3744742_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3744837_3745548_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3745544_3746534_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3746629_3748261_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3748263_3749001_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3749156_3750029_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3750378_3751518_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3751514_3752174_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3752245_3752878_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3752907_3753426_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3753436_3754546_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3754592_3755447_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3755448_3756351_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3757573_3758524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3760280_3761270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3761266_3761425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3761445_3762234_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3762230_3763262_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3763280_3763844_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3763899_3765420_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3765683_3766388_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3766395_3767124_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3767238_3767613_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3767655_3768945_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3768941_3770111_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3770107_3770947_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3771006_3771942_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3771954_3772905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3773003_3773966_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3773997_3774357_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3774481_3775384_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3775385_3777158_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3777192_3777969_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_080485501.1|3779292_3780243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	3795181	3853253	4386396	transposase,tRNA	Planktothrix_phage(12.5%)	46	NA	NA
WP_010929584.1|3795181_3796132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3796260_3797394_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3797437_3798343_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3798345_3800046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3800042_3800963_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3800970_3801948_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852626.1|3802006_3802966_-	succinylglutamate desuccinylase/aspartoacylase	NA	NA	NA	NA	NA
WP_003815317.1|3805015_3805252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3805378_3806242_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3806330_3807152_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3807231_3807969_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3807965_3808958_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3809110_3809734_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3809778_3810927_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3813250_3814201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3814541_3815492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3815590_3816541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3816837_3817335_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3817377_3819153_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3819160_3820027_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3820033_3820759_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815296.1|3823020_3823611_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3823644_3824973_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3825047_3826193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3826304_3827303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3827265_3827700_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3829216_3830101_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3830097_3831303_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3831299_3832160_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3832272_3834063_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3834103_3834754_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3834769_3835078_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3835243_3836530_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3837963_3838914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3840865_3842080_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3842185_3843175_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3843171_3843780_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3843792_3844422_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3844418_3845039_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3845070_3845862_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3846713_3847169_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3847187_3848114_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3848167_3849454_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3850384_3851257_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3851253_3852204_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3852302_3853253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 35
NZ_CP017405	Bordetella pertussis strain 25525 chromosome, complete genome	4386396	4285464	4350376	4386396	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4285464_4285950_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4286038_4286176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4286168_4287149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4287415_4288225_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4288264_4288945_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4288938_4289397_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4289408_4289771_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4289853_4290537_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4290592_4290901_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4290919_4291234_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4291230_4293705_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4293712_4295104_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4295100_4295286_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4295264_4295966_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4295962_4296784_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4296764_4297889_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4297881_4298901_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4299106_4299997_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010931657.1|4300139_4301033_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4301115_4301490_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4301467_4302877_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4302869_4304252_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4304586_4306191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4306268_4307240_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4307250_4308177_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_077069022.1|4308567_4309518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4309687_4310914_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4311113_4311980_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4311972_4312935_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4313035_4313986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|4314084_4315035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4315133_4316084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4316080_4317574_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4317570_4320678_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4320674_4323743_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4323739_4324990_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4325170_4325923_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4325964_4326609_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4326617_4327457_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4327697_4328441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4328523_4328871_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4328968_4329811_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4329855_4330743_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4330769_4330958_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4331055_4332513_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4332499_4334026_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4334044_4334512_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4334511_4335534_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4335654_4336395_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4336449_4337550_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4337551_4338742_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4338861_4339878_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4340196_4340868_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4340864_4341773_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4341984_4342632_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4346492_4347560_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4347570_4348380_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4348469_4349243_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4349243_4349408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4349425_4350376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
