The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017751	Cupriavidus sp. USMAHM13 chromosome 1, complete sequence	4181780	1629955	1638913	4181780		Bacillus_phage(16.67%)	8	NA	NA
WP_071011649.1|1629955_1631341_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	36.2	4.9e-72
WP_071011651.1|1631412_1632360_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	26.4	1.3e-12
WP_071011652.1|1632443_1633436_+	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	33.1	1.2e-27
WP_071011654.1|1633600_1633945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071011655.1|1634330_1635635_+	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	64.9	2.8e-146
WP_071011657.1|1635720_1636623_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	40.5	2.5e-53
WP_071011658.1|1636747_1637854_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_071011660.1|1637989_1638913_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	33.2	1.1e-38
>prophage 2
NZ_CP017751	Cupriavidus sp. USMAHM13 chromosome 1, complete sequence	4181780	2386731	2395075	4181780		Ralstonia_phage(85.71%)	10	NA	NA
WP_071012657.1|2386731_2387031_-	hypothetical protein	NA	A0A097ZIG4	Ralstonia_phage	58.8	2.1e-20
WP_083384049.1|2387331_2388423_+	replication initiation protein	NA	A0JC21	Ralstonia_phage	65.5	2.6e-124
WP_071012659.1|2388426_2388735_+	hypothetical protein	NA	E5F068	Ralstonia_phage	78.2	1.4e-40
WP_156811215.1|2388731_2388902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156811217.1|2388916_2389150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071012663.1|2389152_2389368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156811219.1|2389519_2390893_+	hypothetical protein	NA	A0A097ZIF9	Ralstonia_phage	54.0	1.1e-23
WP_071012666.1|2390889_2391213_+	DUF2523 domain-containing protein	NA	B5UAS1	Ralstonia_phage	58.4	6.8e-25
WP_083384050.1|2391217_2392420_+	zonular occludens toxin	NA	A0A1W5LU16	Ralstonia_phage	73.5	3.9e-158
WP_156811364.1|2394247_2395075_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	22.5	6.0e-09
>prophage 3
NZ_CP017751	Cupriavidus sp. USMAHM13 chromosome 1, complete sequence	4181780	2767155	2775538	4181780	tail	Burkholderia_phage(22.22%)	14	NA	NA
WP_071016404.1|2767155_2767509_-	DUF1353 domain-containing protein	NA	A0A1L2CVI8	Pectobacterium_phage	47.8	8.2e-16
WP_071013181.1|2767532_2767733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071013183.1|2767733_2768009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071013186.1|2768060_2768282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071013189.1|2768271_2768760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071013192.1|2768849_2770355_-	hypothetical protein	NA	A0A0B4ZZU0	Achromobacter_phage	38.2	3.1e-64
WP_071013194.1|2770370_2770757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071013197.1|2770828_2771164_-	ammonia monooxygenase	NA	A0A291AUV3	Sinorhizobium_phage	49.6	5.2e-28
WP_071013198.1|2771160_2771715_-	glycoside hydrolase family 19 protein	NA	A0A059VA40	Pseudomonas_phage	52.5	5.6e-43
WP_071013202.1|2771711_2772143_-	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	49.2	5.1e-28
WP_071013205.1|2772278_2773454_+	acyltransferase	NA	A0A2H4IZR3	uncultured_Caudovirales_phage	29.2	2.2e-28
WP_083384092.1|2773470_2773875_-|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	46.3	6.1e-23
WP_071013208.1|2773891_2774821_-	hypothetical protein	NA	A9YX14	Burkholderia_phage	48.1	5.0e-20
WP_071013211.1|2774878_2775538_-	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	59.2	6.8e-72
>prophage 1
NZ_CP017752	Cupriavidus sp. USMAHM13 chromosome 2, complete sequence	3360852	1160910	1181071	3360852	tail	Escherichia_phage(23.08%)	24	NA	NA
WP_071018144.1|1160910_1162863_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	27.0	1.3e-06
WP_071018145.1|1163163_1163526_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_156811428.1|1163506_1163740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071018147.1|1163809_1163995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071022133.1|1164146_1164854_-	helix-turn-helix transcriptional regulator	NA	G9L676	Escherichia_phage	34.8	8.7e-25
WP_156811429.1|1165250_1165562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071018150.1|1165634_1166582_+	hypothetical protein	NA	V5URT9	Shigella_phage	58.9	7.1e-46
WP_071018152.1|1166578_1167961_+	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	43.0	1.3e-80
WP_083384380.1|1168729_1169269_+	hypothetical protein	NA	A0A0M3LQB6	Mannheimia_phage	31.5	1.4e-06
WP_071018157.1|1169343_1170552_+	hypothetical protein	NA	A0A0S0MV10	Pseudomonas_phage	31.4	3.3e-32
WP_071018159.1|1170625_1171042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071018161.1|1171053_1171386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071018163.1|1171388_1172744_+	hypothetical protein	NA	A0A2H4J9A1	uncultured_Caudovirales_phage	54.2	9.5e-12
WP_071018164.1|1172747_1173371_+	hypothetical protein	NA	Q7Y3Z8	Yersinia_phage	37.9	9.7e-20
WP_071018166.1|1173367_1173922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156811430.1|1173918_1174320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083384382.1|1174330_1177522_+	hypothetical protein	NA	A0A1B1IRL4	uncultured_Mediterranean_phage	26.2	3.5e-65
WP_083384383.1|1177548_1178205_+|tail	phage tail protein	tail	D5LGZ0	Escherichia_phage	50.0	1.8e-32
WP_071018173.1|1178227_1178827_+	hypothetical protein	NA	F5B3N7	Synechococcus_phage	45.0	8.5e-05
WP_071018175.1|1178904_1179108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071018177.1|1179109_1179571_+	lysozyme	NA	A0A0U4JP67	Pseudomonas_phage	65.4	1.3e-42
WP_071018180.1|1179558_1179930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071018181.1|1180149_1180446_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_071018183.1|1180456_1181071_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.5	6.6e-21
>prophage 1
NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	278189	121422	178667	278189	integrase,transposase	Stx2-converting_phage(18.18%)	48	112303:112319	149115:149131
112303:112319	attL	GCAGAAGAAGGACCTGA	NA	NA	NA	NA
WP_083384933.1|121422_121776_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	58.9	4.3e-33
WP_071023426.1|121838_123971_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_071023152.1|123997_125416_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_083384866.1|125648_126266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083384868.1|126262_126448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071023156.1|129347_129695_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	71.0	3.6e-40
WP_083384873.1|129691_130099_-|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	35.3	6.8e-14
WP_071023158.1|130196_131477_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	38.9	7.4e-22
WP_071023161.1|131609_132386_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_071023163.1|132704_132959_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_071023166.1|133191_134055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083384935.1|134051_134162_+	DUF3560 domain-containing protein	NA	NA	NA	NA	NA
WP_071023171.1|135439_136084_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_071023173.1|136133_136598_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_071023176.1|136772_136964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071023179.1|138537_139173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071023428.1|139212_139641_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_071023182.1|139710_140043_-	DUF883 family protein	NA	NA	NA	NA	NA
WP_156811587.1|140600_140930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071023186.1|140957_142022_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_083384877.1|142044_142554_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_083384879.1|144211_145186_-	acyltransferase	NA	W6MVL2	Pseudomonas_phage	25.9	4.2e-09
WP_083384881.1|145624_146644_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	33.7	1.1e-41
WP_071023198.1|147676_148801_+|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	24.7	3.1e-08
WP_071023200.1|149247_150054_-	polyphosphate kinase 2	NA	NA	NA	NA	NA
149115:149131	attR	TCAGGTCCTTCTTCTGC	NA	NA	NA	NA
WP_083384883.1|150050_150653_-	hypothetical protein	NA	A0A2K9R7H3	Dishui_lake_phycodnavirus	33.1	7.0e-07
WP_071023434.1|152237_153131_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_071023208.1|153424_153910_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_071023210.1|154209_154713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071023212.1|155314_156298_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_071023215.1|156278_158486_-	NADPH flavoprotein	NA	NA	NA	NA	NA
WP_071023217.1|158511_158979_-	DUF2271 domain-containing protein	NA	NA	NA	NA	NA
WP_071023220.1|159092_159506_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_071023223.1|159649_160309_+	response regulator	NA	W8CYM9	Bacillus_phage	32.7	1.9e-29
WP_071023225.1|160311_161667_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_156811588.1|161765_162386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071023228.1|162382_164680_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	3.9e-50
WP_071023231.1|164786_165698_-	cation transporter	NA	NA	NA	NA	NA
WP_071023234.1|165960_167148_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_071023236.1|167152_169519_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_071023239.1|169512_170229_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	4.8e-31
WP_156811589.1|170280_170721_-	universal stress protein	NA	NA	NA	NA	NA
WP_083384885.1|171863_172700_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_071023245.1|172727_173315_-	LysE family translocator	NA	NA	NA	NA	NA
WP_071023248.1|174439_174853_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_071023251.1|174945_175899_+	aromatic alcohol reductase	NA	NA	NA	NA	NA
WP_071073779.1|176793_177129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083384526.1|177287_178667_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
