assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	1	754943-755028	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	754971-755000	NZ_CP013182.1_796034-796005	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_8|NZ_CP013182.1_741788_741995_+,NA|34aa|down_1|NZ_CP013182.1_756471_756573_+,NA|52aa|down_7|NZ_CP013182.1_764736_764892_+	NA|203aa|up_9|NZ_CP013182.1_741114_741723_+	pfam01063, Aminotran_4, Amino-transferase class IV	NA|69aa|up_8|NZ_CP013182.1_741788_741995_+	NA	NA|237aa|up_7|NZ_CP013182.1_742091_742802_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_6|NZ_CP013182.1_742785_743790_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_5|NZ_CP013182.1_744263_746204_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_4|NZ_CP013182.1_746474_748358_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_3|NZ_CP013182.1_748369_750151_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|505aa|up_2|NZ_CP013182.1_751340_752855_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP013182.1_753094_754153_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP013182.1_754311_754854_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP013182.1_755461_756379_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP013182.1_756471_756573_+	NA	NA|502aa|down_2|NZ_CP013182.1_756650_758156_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP013182.1_758495_758996_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP013182.1_759015_759882_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP013182.1_760682_761081_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|324aa|down_6|NZ_CP013182.1_763265_764237_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_7|NZ_CP013182.1_764736_764892_+	NA	NA|324aa|down_8|NZ_CP013182.1_764930_765902_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_9|NZ_CP013182.1_765888_766845_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	2	932363-932520	1,2	PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	12	932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488|932470-932488	NZ_CP013182.1_801350-801368|NZ_CP013182.1_810517-810535|NZ_CP013182.1_1272554-1272572|NZ_CP013182.1_1272612-1272630|NZ_CP013182.1_1961578-1961596|NZ_CP013182.1_2301731-2301713|NZ_CP013182.1_163409-163427|NZ_CP013182.1_601923-601905|NZ_CP013182.1_912197-912179|NZ_CP013182.1_1131253-1131235|NZ_CP013182.1_1344371-1344389|NZ_CP013182.1_1640983-1641001	NA:NA	2,1	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|192aa|up_9|NZ_CP013182.1_918801_919377_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP013182.1_919381_919906_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP013182.1_919921_920497_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP013182.1_920656_924133_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP013182.1_924133_927787_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP013182.1_927952_928855_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP013182.1_929182_929572_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP013182.1_929743_931060_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP013182.1_931111_931936_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP013182.1_932049_932358_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP013182.1_933011_934826_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP013182.1_935028_937638_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP013182.1_937696_938566_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|214aa|down_3|NZ_CP013182.1_939803_940445_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_4|NZ_CP013182.1_941539_942055_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_5|NZ_CP013182.1_942365_942800_+	pfam03642, MAP, MAP domain	NA|62aa|down_6|NZ_CP013182.1_943056_943242_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_7|NZ_CP013182.1_943536_944478_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_8|NZ_CP013182.1_944489_945734_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|124aa|down_9|NZ_CP013182.1_945787_946159_-	pfam13038, DUF3899, Domain of unknown function (DUF3899)
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	3	1050883-1050975	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP013182.1_1050984_1051119_-,NA|432aa|down_1|NZ_CP013182.1_1051270_1052566_+	NA|224aa|up_9|NZ_CP013182.1_1038677_1039349_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP013182.1_1039341_1041531_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP013182.1_1041509_1042994_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP013182.1_1042986_1044015_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP013182.1_1044017_1044584_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP013182.1_1044598_1046077_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP013182.1_1046098_1047346_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP013182.1_1047611_1048418_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP013182.1_1048410_1049811_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP013182.1_1049825_1050401_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP013182.1_1050984_1051119_-	NA	NA|432aa|down_1|NZ_CP013182.1_1051270_1052566_+	NA	NA|181aa|down_2|NZ_CP013182.1_1054215_1054758_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_3|NZ_CP013182.1_1054911_1055178_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_4|NZ_CP013182.1_1055180_1056899_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_5|NZ_CP013182.1_1057135_1057369_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_6|NZ_CP013182.1_1057566_1058928_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_7|NZ_CP013182.1_1058924_1059944_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_8|NZ_CP013182.1_1060076_1060739_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|566aa|down_9|NZ_CP013182.1_1060852_1062550_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	4	1209846-1209938	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|NZ_CP013182.1_1199720_1200365_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP013182.1_1200371_1201013_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP013182.1_1201394_1201583_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP013182.1_1202025_1202400_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP013182.1_1202414_1204061_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP013182.1_1204250_1206311_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP013182.1_1206512_1207085_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP013182.1_1207089_1208076_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP013182.1_1208068_1208995_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP013182.1_1208987_1209722_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP013182.1_1210027_1210261_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP013182.1_1210376_1211108_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP013182.1_1211254_1214821_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP013182.1_1214820_1216071_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP013182.1_1216057_1216390_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|92aa|down_5|NZ_CP013182.1_1218127_1218403_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_6|NZ_CP013182.1_1218590_1219094_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_7|NZ_CP013182.1_1219093_1219831_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_8|NZ_CP013182.1_1219933_1220284_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_9|NZ_CP013182.1_1220527_1223134_-	COG4485, COG4485, Predicted membrane protein [Function unknown]
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	5	1415082-1415161	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|68aa|up_5|NZ_CP013182.1_1406562_1406766_-,NA	NA|379aa|up_9|NZ_CP013182.1_1400912_1402049_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NZ_CP013182.1_1402122_1403466_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NZ_CP013182.1_1403690_1405577_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NZ_CP013182.1_1405590_1406382_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NZ_CP013182.1_1406562_1406766_-	NA	NA|270aa|up_4|NZ_CP013182.1_1406794_1407604_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NZ_CP013182.1_1408183_1409452_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NZ_CP013182.1_1409465_1412264_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NZ_CP013182.1_1412552_1413908_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP013182.1_1413904_1414564_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NZ_CP013182.1_1415705_1416320_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NZ_CP013182.1_1416336_1417407_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NZ_CP013182.1_1417418_1417928_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NZ_CP013182.1_1418327_1419818_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NZ_CP013182.1_1420009_1420231_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NZ_CP013182.1_1420230_1420731_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NZ_CP013182.1_1420742_1421171_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NZ_CP013182.1_1421163_1421697_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NZ_CP013182.1_1421786_1422626_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NZ_CP013182.1_1422640_1423120_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	6	1960125-1960206	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP013182.1_1954322_1954598_+,NA|129aa|up_1|NZ_CP013182.1_1958580_1958967_-,NA|138aa|down_1|NZ_CP013182.1_1961889_1962303_-,NA|37aa|down_2|NZ_CP013182.1_1962331_1962442_-,NA|31aa|down_6|NZ_CP013182.1_1965447_1965540_-	NA|419aa|up_9|NZ_CP013182.1_1952245_1953502_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP013182.1_1953504_1953705_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP013182.1_1953851_1954316_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP013182.1_1954322_1954598_+	NA	NA|406aa|up_5|NZ_CP013182.1_1954875_1956093_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP013182.1_1956205_1956835_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP013182.1_1956824_1957868_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP013182.1_1957864_1958566_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP013182.1_1958580_1958967_-	NA	NA|253aa|up_0|NZ_CP013182.1_1959183_1959942_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP013182.1_1960470_1961457_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP013182.1_1961889_1962303_-	NA	NA|37aa|down_2|NZ_CP013182.1_1962331_1962442_-	NA	NA|244aa|down_3|NZ_CP013182.1_1962527_1963259_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP013182.1_1963260_1964574_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP013182.1_1964865_1965366_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP013182.1_1965447_1965540_-	NA	DEDDh|185aa|down_7|NZ_CP013182.1_1965756_1966311_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP013182.1_1966377_1967448_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP013182.1_1967694_1968225_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	7	2019838-2019923	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|59aa|up_6|NZ_CP013182.1_2009980_2010157_-,NA|33aa|up_5|NZ_CP013182.1_2010398_2010497_-,NA	NA|227aa|up_9|NZ_CP013182.1_2007485_2008166_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_8|NZ_CP013182.1_2008166_2009063_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_7|NZ_CP013182.1_2009059_2009440_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_6|NZ_CP013182.1_2009980_2010157_-	NA	NA|33aa|up_5|NZ_CP013182.1_2010398_2010497_-	NA	NA|429aa|up_4|NZ_CP013182.1_2010696_2011983_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|579aa|up_3|NZ_CP013182.1_2012261_2013998_-	pfam03642, MAP, MAP domain	NA|331aa|up_2|NZ_CP013182.1_2014386_2015379_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|352aa|up_1|NZ_CP013182.1_2016908_2017964_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP013182.1_2018399_2019623_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP013182.1_2020063_2021371_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NZ_CP013182.1_2021911_2023528_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP013182.1_2023603_2023888_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP013182.1_2024062_2024806_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NZ_CP013182.1_2024830_2026030_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP013182.1_2026226_2026853_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP013182.1_2027213_2027999_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP013182.1_2028595_2028730_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_8|NZ_CP013182.1_2028964_2029534_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NZ_CP013182.1_2029530_2029671_+	pfam05931, AgrD, Staphylococcal AgrD protein
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	8	2267410-2267494	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	4	2267440-2267464|2267440-2267464|2267440-2267464|2267440-2267464	NZ_CP013182.1_1135395-1135371|NZ_CP013182.1_1815372-1815396|NZ_CP013182.1_2267496-2267520|NZ_CP013182.1_1135339-1135315	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP013182.1_2257917_2258082_+,NA|106aa|up_8|NZ_CP013182.1_2258326_2258644_+,NA|84aa|up_5|NZ_CP013182.1_2263768_2264020_+,NA|57aa|up_0|NZ_CP013182.1_2267160_2267331_+,NA	NA|55aa|up_9|NZ_CP013182.1_2257917_2258082_+	NA	NA|106aa|up_8|NZ_CP013182.1_2258326_2258644_+	NA	NA|1056aa|up_7|NZ_CP013182.1_2258830_2261998_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP013182.1_2262114_2263380_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP013182.1_2263768_2264020_+	NA	NA|255aa|up_4|NZ_CP013182.1_2264011_2264776_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP013182.1_2264938_2265379_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP013182.1_2265371_2266583_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP013182.1_2266684_2267035_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP013182.1_2267160_2267331_+	NA	NA|341aa|down_0|NZ_CP013182.1_2267671_2268694_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP013182.1_2268713_2269313_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP013182.1_2269319_2269553_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP013182.1_2269558_2270005_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP013182.1_2270018_2270504_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP013182.1_2270500_2271760_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP013182.1_2271822_2272317_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP013182.1_2272318_2272825_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP013182.1_2272855_2273860_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP013182.1_2274028_2274634_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	9	2421973-2422065	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP013182.1_2419626_2419731_+,NA|32aa|down_0|NZ_CP013182.1_2422269_2422365_-	NA|200aa|up_9|NZ_CP013182.1_2413104_2413704_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP013182.1_2413722_2414085_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP013182.1_2414339_2415590_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP013182.1_2415686_2416418_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP013182.1_2416414_2417134_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP013182.1_2417114_2417894_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP013182.1_2418014_2419454_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP013182.1_2419626_2419731_+	NA	NA|229aa|up_1|NZ_CP013182.1_2419884_2420571_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP013182.1_2420896_2421763_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NZ_CP013182.1_2422269_2422365_-	NA	NA|443aa|down_1|NZ_CP013182.1_2422459_2423788_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP013182.1_2424260_2425190_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP013182.1_2425757_2426705_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP013182.1_2426706_2427684_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|154aa|down_5|NZ_CP013182.1_2427740_2428202_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP013182.1_2428212_2428905_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP013182.1_2428915_2430031_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP013182.1_2430008_2431016_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP013182.1_2431017_2432376_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_001880265.1_ASM188026v1	NZ_CP013182	Staphylococcus aureus strain SA40TW chromosome, complete genome	10	2765571-2765656	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	12	2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626|2765601-2765626	NZ_CP013182.1_601989-601964|NZ_CP013182.1_1135510-1135485|NZ_CP013182.1_1272487-1272512|NZ_CP013182.1_764428-764403|NZ_CP013182.1_764484-764459|NZ_CP013182.1_810393-810418|NZ_CP013182.1_1786551-1786526|NZ_CP013182.1_2009794-2009819|NZ_CP013182.1_2185038-2185063|NZ_CP013182.1_2301796-2301771|NZ_CP013182.1_2105726-2105701|NZ_CP013182.1_2106064-2106039	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|64aa|up_6|NZ_CP013182.1_2761048_2761240_+,NA|166aa|up_5|NZ_CP013182.1_2761846_2762344_-,NA|64aa|up_4|NZ_CP013182.1_2762800_2762992_+,NA	NA|171aa|up_9|NZ_CP013182.1_2757525_2758038_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NZ_CP013182.1_2758327_2759086_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NZ_CP013182.1_2759075_2760956_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NZ_CP013182.1_2761048_2761240_+	NA	NA|166aa|up_5|NZ_CP013182.1_2761846_2762344_-	NA	NA|64aa|up_4|NZ_CP013182.1_2762800_2762992_+	NA	NA|67aa|up_3|NZ_CP013182.1_2763383_2763584_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP013182.1_2763710_2764280_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP013182.1_2764530_2764926_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP013182.1_2764993_2765347_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP013182.1_2765956_2766796_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP013182.1_2766838_2767558_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP013182.1_2767557_2769435_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP013182.1_2769501_2770881_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP013182.1_2771024_2771378_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP013182.1_2771497_2771635_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
