assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	1	32232-32792	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Type III-C,Type III-A,Type III-D, Type III-B?,Type III-B	GTATCAATCCCCTTACGGGGAAGCATCTCTTGCAAC,GTATCAATCCCCTTACGGGGAAGCATCTCTTGCAAC,GTTGCAAGAGATGCTTCCCCGTAAGGGGATTG	36,36,32	0	0	NA	NA	III-A:III-A:III-A	7,7,7	7	TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B?,TypeIII-B	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA|197aa|up_9|NZ_CP016313.1_22773_23364_-,NA|188aa|down_3|NZ_CP016313.1_38708_39272_+,NA|83aa|down_4|NZ_CP016313.1_39204_39453_+	NA|197aa|up_9|NZ_CP016313.1_22773_23364_-	NA	cas6|245aa|up_8|NZ_CP016313.1_23356_24091_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas10|808aa|up_7|NZ_CP016313.1_24168_26592_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|138aa|up_6|NZ_CP016313.1_26592_27006_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	NA|248aa|up_5|NZ_CP016313.1_27042_27786_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	csm3gr7|238aa|up_4|NZ_CP016313.1_28061_28775_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|289aa|up_3|NZ_CP016313.1_28786_29653_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|379aa|up_2|NZ_CP016313.1_29649_30786_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csx1|387aa|up_1|NZ_CP016313.1_30775_31936_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	cas2|91aa|up_0|NZ_CP016313.1_31939_32212_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|316aa|down_0|NZ_CP016313.1_33137_34085_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	csx1|402aa|down_1|NZ_CP016313.1_34084_35290_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|456aa|down_2|NZ_CP016313.1_35878_37246_-	pfam10134, RPA, Replication initiator protein A	NA|188aa|down_3|NZ_CP016313.1_38708_39272_+	NA	NA|83aa|down_4|NZ_CP016313.1_39204_39453_+	NA	cas10|584aa|down_5|NZ_CP016313.1_39718_41470_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|366aa|down_6|NZ_CP016313.1_41459_42557_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr1gr7|411aa|down_7|NZ_CP016313.1_42553_43786_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr4gr7|287aa|down_8|NZ_CP016313.1_43796_44657_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|115aa|down_9|NZ_CP016313.1_44660_45005_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	2	46134-46848	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cas10,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas6,cas8b1,cas7,cas5	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Type III-C, Type I-B,Type III-A,Type III-D,Type III-B,Type I-B, or Type III-B?	GTTTCAAACCCTCATAGGTACGGTACGAAC,GTTTCAAACCCTCATAGGTACGGTACGAAC,GTTTCAAACCCTCATAGGTACGGTACGAAC	30,30,30	0	0	NA	NA	NA:NA:NA	10,10,10	10	TypeIII-C,TypeI-B,TypeIII-A,TypeIII-D,TypeIII-B,TypeI-B,orTypeIII-B?	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA|188aa|up_7|NZ_CP016313.1_38708_39272_+,NA|83aa|up_6|NZ_CP016313.1_39204_39453_+,NA|61aa|down_9|NZ_CP016313.1_56514_56697_-	csx1|402aa|up_9|NZ_CP016313.1_34084_35290_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|456aa|up_8|NZ_CP016313.1_35878_37246_-	pfam10134, RPA, Replication initiator protein A	NA|188aa|up_7|NZ_CP016313.1_38708_39272_+	NA	NA|83aa|up_6|NZ_CP016313.1_39204_39453_+	NA	cas10|584aa|up_5|NZ_CP016313.1_39718_41470_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|366aa|up_4|NZ_CP016313.1_41459_42557_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr1gr7|411aa|up_3|NZ_CP016313.1_42553_43786_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr4gr7|287aa|up_2|NZ_CP016313.1_43796_44657_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|115aa|up_1|NZ_CP016313.1_44660_45005_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|346aa|up_0|NZ_CP016313.1_45007_46045_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas1|328aa|down_0|NZ_CP016313.1_47033_48017_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|176aa|down_1|NZ_CP016313.1_48009_48537_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|529aa|down_2|NZ_CP016313.1_48512_50099_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3HD|241aa|down_3|NZ_CP016313.1_50032_50755_-	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	cas6|240aa|down_4|NZ_CP016313.1_50799_51519_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|635aa|down_5|NZ_CP016313.1_51515_53420_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7|321aa|down_6|NZ_CP016313.1_53406_54369_+	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|230aa|down_7|NZ_CP016313.1_54386_55076_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas2|87aa|down_8|NZ_CP016313.1_55080_55341_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|61aa|down_9|NZ_CP016313.1_56514_56697_-	NA
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	3	55531-56445	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas10,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas1,cas4,cas3,cas3HD,cas6,cas8b1,cas7,cas5,cas2	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Type III-C, Type III-B?,Type III-A,Type III-D,Type III-B,Type I-B	GTTTCAAACCCTCATAGGTACGGTACGAAC,GTTCGTACCGTACCTATGAGGGTTTGAAAC,GTTCGTACCGTACCTATGAGGGTTTGAAACNNNN	30,30,34	0	0	NA	NA	NA:NA:NA	12,12,13	13	TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B?,TypeIII-B,TypeI-B	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA,NA|61aa|down_0|NZ_CP016313.1_56514_56697_-,NA|70aa|down_1|NZ_CP016313.1_56842_57052_-	cmr6gr7|346aa|up_9|NZ_CP016313.1_45007_46045_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas1|328aa|up_8|NZ_CP016313.1_47033_48017_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|176aa|up_7|NZ_CP016313.1_48009_48537_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|529aa|up_6|NZ_CP016313.1_48512_50099_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3HD|241aa|up_5|NZ_CP016313.1_50032_50755_-	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	cas6|240aa|up_4|NZ_CP016313.1_50799_51519_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|635aa|up_3|NZ_CP016313.1_51515_53420_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7|321aa|up_2|NZ_CP016313.1_53406_54369_+	cd09690, Cas7_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|230aa|up_1|NZ_CP016313.1_54386_55076_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas2|87aa|up_0|NZ_CP016313.1_55080_55341_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|61aa|down_0|NZ_CP016313.1_56514_56697_-	NA	NA|70aa|down_1|NZ_CP016313.1_56842_57052_-	NA	NA|233aa|down_2|NZ_CP016313.1_57396_58095_-	cd07729, AHL_lactonase_MBL-fold, quorum-quenching N-acyl-homoserine lactonase, MBL-fold metallo-hydrolase domain	NA|434aa|down_3|NZ_CP016313.1_58097_59399_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|154aa|down_4|NZ_CP016313.1_59395_59857_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|319aa|down_5|NZ_CP016313.1_59853_60810_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|330aa|down_6|NZ_CP016313.1_60833_61823_-	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|256aa|down_7|NZ_CP016313.1_61819_62587_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|258aa|down_8|NZ_CP016313.1_62573_63347_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|183aa|down_9|NZ_CP016313.1_63343_63892_-	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	4	82781-82870	4	CRISPRCasFinder	no		cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Orphan	CCCCTTCCCCTTTCCCGCGAGGCGGTAGG	29	0	0	NA	NA	NA	1	1	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA|253aa|up_7|NZ_CP016313.1_73160_73919_-,NA|134aa|down_6|NZ_CP016313.1_90609_91011_-	NA|697aa|up_9|NZ_CP016313.1_69101_71192_-	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|651aa|up_8|NZ_CP016313.1_71196_73149_-	cd14256, Dockerin_I, Type I dockerin repeat domain	NA|253aa|up_7|NZ_CP016313.1_73160_73919_-	NA	NA|694aa|up_6|NZ_CP016313.1_73929_76011_-	cd14256, Dockerin_I, Type I dockerin repeat domain	NA|293aa|up_5|NZ_CP016313.1_76365_77244_-	COG2342, COG2342, Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]	NA|191aa|up_4|NZ_CP016313.1_77188_77761_-	cd09618, CBM9_like_2, DOMON-like type 9 carbohydrate binding module	NA|266aa|up_3|NZ_CP016313.1_77777_78575_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|up_2|NZ_CP016313.1_78567_79503_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|494aa|up_1|NZ_CP016313.1_79503_80985_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|364aa|up_0|NZ_CP016313.1_81010_82102_-	pfam11335, DUF3137, Protein of unknown function (DUF3137)	NA|359aa|down_0|NZ_CP016313.1_83483_84560_-	pfam11335, DUF3137, Protein of unknown function (DUF3137)	NA|189aa|down_1|NZ_CP016313.1_84588_85155_-	pfam04011, LemA, LemA family	NA|387aa|down_2|NZ_CP016313.1_85201_86362_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|475aa|down_3|NZ_CP016313.1_86355_87780_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|264aa|down_4|NZ_CP016313.1_87865_88657_+	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase	NA|357aa|down_5|NZ_CP016313.1_88687_89758_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|134aa|down_6|NZ_CP016313.1_90609_91011_-	NA	NA|359aa|down_7|NZ_CP016313.1_91482_92559_+	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|457aa|down_8|NZ_CP016313.1_92606_93977_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|423aa|down_9|NZ_CP016313.1_94009_95278_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	5	134393-135022	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Type I-U,Type I-C	GTTGCACCGGTCCGAAAGGACCGGTGAGGATTGAAAC,GTTGCACCGGTCCGAAAGGACCGGTGAGGATTGAAAC,GTTGCACCGGTCCGAAAGGACCGGTGAGGATTGAAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	8,8,8	8	TypeI-U,TypeI-C	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA,NA|66aa|down_0|NZ_CP016313.1_137141_137339_-,NA|157aa|down_1|NZ_CP016313.1_137341_137812_-,NA|335aa|down_2|NZ_CP016313.1_137865_138870_-,NA|109aa|down_4|NZ_CP016313.1_141056_141383_+,NA|340aa|down_5|NZ_CP016313.1_141379_142399_+,NA|263aa|down_6|NZ_CP016313.1_142771_143560_+	NA|251aa|up_9|NZ_CP016313.1_122635_123388_-	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	cas6|203aa|up_8|NZ_CP016313.1_124554_125163_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|72aa|up_7|NZ_CP016313.1_125676_125892_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	cas3|749aa|up_6|NZ_CP016313.1_126475_128722_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|229aa|up_5|NZ_CP016313.1_128730_129417_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|585aa|up_4|NZ_CP016313.1_129400_131155_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7b|386aa|up_3|NZ_CP016313.1_131151_132309_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|194aa|up_2|NZ_CP016313.1_132298_132880_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|340aa|up_1|NZ_CP016313.1_132876_133896_+	cd09721, Cas1_I-C, CRISPR/Cas system-associated protein Cas1	cas2|100aa|up_0|NZ_CP016313.1_133898_134198_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|66aa|down_0|NZ_CP016313.1_137141_137339_-	NA	NA|157aa|down_1|NZ_CP016313.1_137341_137812_-	NA	NA|335aa|down_2|NZ_CP016313.1_137865_138870_-	NA	NA|248aa|down_3|NZ_CP016313.1_140240_140984_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|109aa|down_4|NZ_CP016313.1_141056_141383_+	NA	NA|340aa|down_5|NZ_CP016313.1_141379_142399_+	NA	NA|263aa|down_6|NZ_CP016313.1_142771_143560_+	NA	NA|530aa|down_7|NZ_CP016313.1_144351_145941_+	PHA02876, PHA02876, ankyrin repeat protein; Provisional	NA|1015aa|down_8|NZ_CP016313.1_146081_149126_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|444aa|down_9|NZ_CP016313.1_149098_150430_-	cd03468, PolY_like, DNA Polymerase Y-family
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	6	251952-253500	6,5,5	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Type I-E	CGGTCCATCCCCACGTGCGTGGGGACTAC,CGGTCCATCCCCACGTGCGTGGGGACTAC,GGTCCATCCCCACGTGCGTGGGGACTAC	29,29,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	25,25,25	25	TypeI-E	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA|117aa|up_2|NZ_CP016313.1_249807_250158_+,NA|76aa|down_9|NZ_CP016313.1_265171_265399_-	NA|294aa|up_9|NZ_CP016313.1_243052_243934_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|399aa|up_8|NZ_CP016313.1_243937_245134_-	cd06330, PBP1_As_SBP-like, periplasmic substrate-binding domain of active transport proteins	NA|244aa|up_7|NZ_CP016313.1_245144_245876_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|432aa|up_6|NZ_CP016313.1_245862_247158_-	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)	NA|179aa|up_5|NZ_CP016313.1_247259_247796_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|385aa|up_4|NZ_CP016313.1_247686_248841_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|326aa|up_3|NZ_CP016313.1_248837_249815_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|117aa|up_2|NZ_CP016313.1_249807_250158_+	NA	NA|214aa|up_1|NZ_CP016313.1_250154_250796_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|328aa|up_0|NZ_CP016313.1_250792_251776_-	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	WYL|323aa|down_0|NZ_CP016313.1_253702_254671_+	pfam13280, WYL, WYL domain	cas3|921aa|down_1|NZ_CP016313.1_254680_257443_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|486aa|down_2|NZ_CP016313.1_257478_258936_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|167aa|down_3|NZ_CP016313.1_258932_259433_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|373aa|down_4|NZ_CP016313.1_259429_260548_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|224aa|down_5|NZ_CP016313.1_260549_261221_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|211aa|down_6|NZ_CP016313.1_261210_261843_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|323aa|down_7|NZ_CP016313.1_261851_262820_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|119aa|down_8|NZ_CP016313.1_262779_263136_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|76aa|down_9|NZ_CP016313.1_265171_265399_-	NA
GCF_001880325.1_ASM188032v1	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	7	263194-264862	7,6,6	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e,csa3	Type I-E	GTAGTCCCCACACGCGTGGGGATGGACCG,GTAGTCCCCACACGCGTGGGGATGGACCG,GTAGTCCCCACACGCGTGGGGATGGACCG	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	27,27,11	27	TypeI-E	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA,NA|76aa|down_0|NZ_CP016313.1_265171_265399_-,NA|386aa|down_7|NZ_CP016313.1_272099_273257_-,NA|148aa|down_9|NZ_CP016313.1_274151_274595_-	NA|328aa|up_9|NZ_CP016313.1_250792_251776_-	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	WYL|323aa|up_8|NZ_CP016313.1_253702_254671_+	pfam13280, WYL, WYL domain	cas3|921aa|up_7|NZ_CP016313.1_254680_257443_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|486aa|up_6|NZ_CP016313.1_257478_258936_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|167aa|up_5|NZ_CP016313.1_258932_259433_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|373aa|up_4|NZ_CP016313.1_259429_260548_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|224aa|up_3|NZ_CP016313.1_260549_261221_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|211aa|up_2|NZ_CP016313.1_261210_261843_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|323aa|up_1|NZ_CP016313.1_261851_262820_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|119aa|up_0|NZ_CP016313.1_262779_263136_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|76aa|down_0|NZ_CP016313.1_265171_265399_-	NA	NA|424aa|down_1|NZ_CP016313.1_265822_267094_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|307aa|down_2|NZ_CP016313.1_267081_268002_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|273aa|down_3|NZ_CP016313.1_267988_268807_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|264aa|down_4|NZ_CP016313.1_268803_269595_+	pfam13277, YmdB, YmdB-like protein	NA|345aa|down_5|NZ_CP016313.1_270564_271599_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|134aa|down_6|NZ_CP016313.1_271608_272010_-	pfam02635, DrsE, DsrE/DsrF-like family	NA|386aa|down_7|NZ_CP016313.1_272099_273257_-	NA	NA|288aa|down_8|NZ_CP016313.1_273291_274155_-	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|148aa|down_9|NZ_CP016313.1_274151_274595_-	NA
GCF_001880325.1_ASM188032v1	NZ_CP016312	Thermus brockianus strain GE-1 chromosome, complete genome	1	1443256-1443979	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,Cas9_archaeal,cas3,DEDDh	Orphan	GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC,GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC,GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	8,9,9	9	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA|209aa|up_7|NZ_CP016312.1_1434832_1435459_+,NA|124aa|down_1|NZ_CP016312.1_1444972_1445344_-	NA|262aa|up_9|NZ_CP016312.1_1432188_1432974_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|294aa|up_8|NZ_CP016312.1_1433921_1434803_+	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|209aa|up_7|NZ_CP016312.1_1434832_1435459_+	NA	NA|398aa|up_6|NZ_CP016312.1_1435444_1436638_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|377aa|up_5|NZ_CP016312.1_1436654_1437785_-	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|81aa|up_4|NZ_CP016312.1_1439089_1439332_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|246aa|up_3|NZ_CP016312.1_1439359_1440097_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|306aa|up_2|NZ_CP016312.1_1440089_1441007_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|323aa|up_1|NZ_CP016312.1_1441006_1441975_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|179aa|up_0|NZ_CP016312.1_1442307_1442844_-	pfam02620, DUF177, Uncharacterized ACR, COG1399	NA|321aa|down_0|NZ_CP016312.1_1444013_1444976_+	cd09989, Arginase, Arginase family	NA|124aa|down_1|NZ_CP016312.1_1444972_1445344_-	NA	NA|427aa|down_2|NZ_CP016312.1_1445418_1446699_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|470aa|down_3|NZ_CP016312.1_1446695_1448105_-	TIGR01972, NADH-quinone_oxidoreductase_subunit_M, proton-translocating NADH-quinone oxidoreductase, chain M	NA|607aa|down_4|NZ_CP016312.1_1448098_1449919_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|96aa|down_5|NZ_CP016312.1_1449921_1450209_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|178aa|down_6|NZ_CP016312.1_1450205_1450739_-	pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6	NA|183aa|down_7|NZ_CP016312.1_1450735_1451284_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|355aa|down_8|NZ_CP016312.1_1451280_1452345_-	pfam00146, NADHdh, NADH dehydrogenase	NA|784aa|down_9|NZ_CP016312.1_1452371_1454723_-	TIGR01973, NADH-quinone_oxidoreductase_subunit_G, NADH-quinone oxidoreductase, chain G
GCF_001880325.1_ASM188032v1	NZ_CP016312	Thermus brockianus strain GE-1 chromosome, complete genome	2	1713219-1714218	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		csa3,Cas9_archaeal,cas3,DEDDh	Orphan	GTTTCAAACCCTCATAGGTACGGTACGAAC,GTTTCAAACCCTCATAGGTACGGTACGAAC,GTTTCAAACCCTCATAGGTACGGTACGAAC	30,30,30	0	0	NA	NA	NA:NA:NA	14,14,12	14	Orphan	csa3,Cas9_archaeal,cas3,DEDDh,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas4,cas3HD,cas8b1,cas7,cas5,cas8c,cas7b,WYL,cas8e,cse2gr11,cas6e	NA|105aa|up_7|NZ_CP016312.1_1707392_1707707_+,NA|99aa|up_6|NZ_CP016312.1_1707703_1708000_+,NA|113aa|up_5|NZ_CP016312.1_1707972_1708311_-,NA	NA|232aa|up_9|NZ_CP016312.1_1703523_1704219_+	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain	NA|352aa|up_8|NZ_CP016312.1_1706327_1707383_+	PRK07409, PRK07409, threonine synthase; Validated	NA|105aa|up_7|NZ_CP016312.1_1707392_1707707_+	NA	NA|99aa|up_6|NZ_CP016312.1_1707703_1708000_+	NA	NA|113aa|up_5|NZ_CP016312.1_1707972_1708311_-	NA	NA|477aa|up_4|NZ_CP016312.1_1708303_1709734_-	PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional	NA|130aa|up_3|NZ_CP016312.1_1710047_1710437_+	pfam11497, NADH_Oxid_Nqo15, NADH-quinone oxidoreductase chain 15	NA|133aa|up_2|NZ_CP016312.1_1710433_1710832_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|374aa|up_1|NZ_CP016312.1_1710860_1711982_-	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	NA|407aa|up_0|NZ_CP016312.1_1711981_1713202_-	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|425aa|down_0|NZ_CP016312.1_1714438_1715713_-	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|521aa|down_1|NZ_CP016312.1_1718208_1719771_-	PRK09255, PRK09255, malate synthase; Validated	NA|253aa|down_2|NZ_CP016312.1_1719870_1720629_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|232aa|down_3|NZ_CP016312.1_1720682_1721378_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|239aa|down_4|NZ_CP016312.1_1722686_1723403_-	PRK14100, PRK14100, 2-phosphosulfolactate phosphatase; Provisional	NA|217aa|down_5|NZ_CP016312.1_1723415_1724066_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|210aa|down_6|NZ_CP016312.1_1724114_1724744_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|236aa|down_7|NZ_CP016312.1_1724758_1725466_+	cd17765, PNP_ThPNP_like, purine nucleoside phosphorylases similar to Thermus thermophiles PNP	NA|272aa|down_8|NZ_CP016312.1_1725467_1726283_+	PRK07658, PRK07658, enoyl-CoA hydratase; Provisional	NA|292aa|down_9|NZ_CP016312.1_1726327_1727203_+	COG3294, COG3294, HD supefamily hydrolase [General function prediction only]
