assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001885145.1_ASM188514v1	NZ_CP017952	Streptococcus iniae strain 89353 chromosome, complete genome	1	810005-810634	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC,GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC,GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	7,9,9	9	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	NA,NA|148aa|down_1|NZ_CP017952.1_811201_811645_-,NA|206aa|down_9|NZ_CP017952.1_818965_819583_+	NA|451aa|up_9|NZ_CP017952.1_798027_799380_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|219aa|up_8|NZ_CP017952.1_799452_800109_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|377aa|up_7|NZ_CP017952.1_800151_801282_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|245aa|up_6|NZ_CP017952.1_801299_802034_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|256aa|up_5|NZ_CP017952.1_802043_802811_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|214aa|up_4|NZ_CP017952.1_802807_803449_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP017952.1_803933_808040_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP017952.1_808039_808906_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|115aa|up_1|NZ_CP017952.1_808902_809247_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP017952.1_809236_809899_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|141aa|down_0|NZ_CP017952.1_810730_811153_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|148aa|down_1|NZ_CP017952.1_811201_811645_-	NA	NA|611aa|down_2|NZ_CP017952.1_811832_813665_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|148aa|down_3|NZ_CP017952.1_813775_814219_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|219aa|down_4|NZ_CP017952.1_814221_814878_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_5|NZ_CP017952.1_814897_815362_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|393aa|down_6|NZ_CP017952.1_815547_816726_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|282aa|down_7|NZ_CP017952.1_816808_817654_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|340aa|down_8|NZ_CP017952.1_817762_818782_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|206aa|down_9|NZ_CP017952.1_818965_819583_+	NA
GCF_001885145.1_ASM188514v1	NZ_CP017952	Streptococcus iniae strain 89353 chromosome, complete genome	2	1175127-1175268	2	CRISPRCasFinder	no		cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	Orphan	GGCAAAGTTAACTCTTATTGTTTTAGCAATAAAACTATAAGAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas9,cas1,cas2,csn2,csm6,DinG,csa3	NA,NA	NA|437aa|up_9|NZ_CP017952.1_1164643_1165954_-	pfam09913, DUF2142, Predicted membrane protein (DUF2142)	NA|327aa|up_8|NZ_CP017952.1_1165989_1166970_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|409aa|up_7|NZ_CP017952.1_1166962_1168189_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|422aa|up_6|NZ_CP017952.1_1168215_1169481_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|389aa|up_5|NZ_CP017952.1_1169500_1170667_-	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|269aa|up_4|NZ_CP017952.1_1170666_1171473_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|311aa|up_3|NZ_CP017952.1_1171475_1172408_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|385aa|up_2|NZ_CP017952.1_1172397_1173552_-	cd04955, GT4-like, glycosyltransferase family 4 proteins	NA|285aa|up_1|NZ_CP017952.1_1173669_1174524_-	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|113aa|up_0|NZ_CP017952.1_1174617_1174956_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|370aa|down_0|NZ_CP017952.1_1175331_1176441_-	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated	NA|604aa|down_1|NZ_CP017952.1_1176449_1178261_-	PRK05667, dnaG, DNA primase; Validated	NA|126aa|down_2|NZ_CP017952.1_1178389_1178767_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|59aa|down_3|NZ_CP017952.1_1179034_1179211_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|1216aa|down_4|NZ_CP017952.1_1179344_1182992_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1079aa|down_5|NZ_CP017952.1_1182988_1186225_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|308aa|down_6|NZ_CP017952.1_1186388_1187312_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|224aa|down_7|NZ_CP017952.1_1187342_1188014_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|357aa|down_8|NZ_CP017952.1_1188022_1189093_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|127aa|down_9|NZ_CP017952.1_1189095_1189476_-	pfam02566, OsmC, OsmC-like protein
