assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	1	220254-220350	1	CRISPRCasFinder	no		c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	CTCCGGCCGTTGACCGCTCATGC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|236aa|up_8|NZ_CP018082.1_210017_210725_-,NA|131aa|up_1|NZ_CP018082.1_218618_219011_-,NA|190aa|down_5|NZ_CP018082.1_226044_226614_+,NA|144aa|down_7|NZ_CP018082.1_227782_228214_+	NA|350aa|up_9|NZ_CP018082.1_208867_209917_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|236aa|up_8|NZ_CP018082.1_210017_210725_-	NA	NA|334aa|up_7|NZ_CP018082.1_211025_212027_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|512aa|up_6|NZ_CP018082.1_212049_213585_-	pfam09913, DUF2142, Predicted membrane protein (DUF2142)	NA|323aa|up_5|NZ_CP018082.1_213581_214550_-	TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family	NA|159aa|up_4|NZ_CP018082.1_214731_215208_+	pfam04138, GtrA, GtrA-like protein	NA|633aa|up_3|NZ_CP018082.1_215345_217244_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|345aa|up_2|NZ_CP018082.1_217320_218355_-	PRK01889, PRK01889, GTPase RsgA; Reviewed	NA|131aa|up_1|NZ_CP018082.1_218618_219011_-	NA	NA|303aa|up_0|NZ_CP018082.1_219215_220124_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|276aa|down_0|NZ_CP018082.1_221190_222018_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|193aa|down_1|NZ_CP018082.1_222360_222939_-	pfam10759, DUF2587, Protein of unknown function (DUF2587)	NA|401aa|down_2|NZ_CP018082.1_223025_224228_+	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|330aa|down_3|NZ_CP018082.1_224318_225308_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|189aa|down_4|NZ_CP018082.1_225391_225958_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|190aa|down_5|NZ_CP018082.1_226044_226614_+	NA	NA|266aa|down_6|NZ_CP018082.1_226653_227451_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|144aa|down_7|NZ_CP018082.1_227782_228214_+	NA	NA|253aa|down_8|NZ_CP018082.1_228308_229067_-	pfam09557, DUF2382, Domain of unknown function (DUF2382)	NA|369aa|down_9|NZ_CP018082.1_229185_230292_-	pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	2	1547487-1547604	2	CRISPRCasFinder	no	WYL	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Unclear	GTGCGGTCATCGCGGACTCCGCATGGTGT	29	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|128aa|up_4|NZ_CP018082.1_1540092_1540476_-,NA|87aa|up_0|NZ_CP018082.1_1546923_1547184_+,NA	NA|258aa|up_9|NZ_CP018082.1_1534787_1535561_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|184aa|up_8|NZ_CP018082.1_1535573_1536125_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|629aa|up_7|NZ_CP018082.1_1536194_1538081_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|414aa|up_6|NZ_CP018082.1_1538093_1539335_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|231aa|up_5|NZ_CP018082.1_1539364_1540057_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|128aa|up_4|NZ_CP018082.1_1540092_1540476_-	NA	NA|739aa|up_3|NZ_CP018082.1_1540754_1542971_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|601aa|up_2|NZ_CP018082.1_1543016_1544819_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|657aa|up_1|NZ_CP018082.1_1544825_1546796_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|87aa|up_0|NZ_CP018082.1_1546923_1547184_+	NA	NA|350aa|down_0|NZ_CP018082.1_1547703_1548753_-	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase	NA|351aa|down_1|NZ_CP018082.1_1549127_1550180_+	cd01005, PBP2_CysP, Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|286aa|down_2|NZ_CP018082.1_1550278_1551136_+	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT	NA|269aa|down_3|NZ_CP018082.1_1551132_1551939_+	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]	NA|332aa|down_4|NZ_CP018082.1_1551935_1552931_+	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter	NA|336aa|down_5|NZ_CP018082.1_1553303_1554311_+	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|529aa|down_6|NZ_CP018082.1_1554328_1555915_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|254aa|down_7|NZ_CP018082.1_1555975_1556737_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|778aa|down_8|NZ_CP018082.1_1557280_1559614_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|253aa|down_9|NZ_CP018082.1_1560102_1560861_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	3	1566615-1566721	3	CRISPRCasFinder	no	WYL	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Unclear	GCGGCGAGGCGCGTGCGGGCAGGGGA	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA,NA|75aa|down_7|NZ_CP018082.1_1574869_1575094_+,NA|144aa|down_9|NZ_CP018082.1_1576494_1576926_-	NA|336aa|up_9|NZ_CP018082.1_1553303_1554311_+	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|529aa|up_8|NZ_CP018082.1_1554328_1555915_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|254aa|up_7|NZ_CP018082.1_1555975_1556737_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|778aa|up_6|NZ_CP018082.1_1557280_1559614_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|253aa|up_5|NZ_CP018082.1_1560102_1560861_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|139aa|up_4|NZ_CP018082.1_1560865_1561282_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	WYL|313aa|up_3|NZ_CP018082.1_1561373_1562312_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|237aa|up_2|NZ_CP018082.1_1562361_1563072_-	cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|472aa|up_1|NZ_CP018082.1_1563094_1564510_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|205aa|up_0|NZ_CP018082.1_1564610_1565225_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|296aa|down_0|NZ_CP018082.1_1566802_1567690_-	cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain	NA|433aa|down_1|NZ_CP018082.1_1567686_1568985_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|310aa|down_2|NZ_CP018082.1_1568986_1569916_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|240aa|down_3|NZ_CP018082.1_1569942_1570662_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|598aa|down_4|NZ_CP018082.1_1570683_1572477_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|142aa|down_5|NZ_CP018082.1_1572911_1573337_+	TIGR02246, hypothetical_protein, conserved hypothetical protein	NA|395aa|down_6|NZ_CP018082.1_1573439_1574624_+	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|75aa|down_7|NZ_CP018082.1_1574869_1575094_+	NA	NA|443aa|down_8|NZ_CP018082.1_1575160_1576489_-	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	NA|144aa|down_9|NZ_CP018082.1_1576494_1576926_-	NA
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	4	2937415-2938992	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Type I-E	GTGCTCCCCGCGCGAGCGGGGATGAGCC,GTGCTCCCCGCGCGAGCGGGGATGAGCCC,GTGCTCCCCGCGCGAGCGGGGATGAGCCC	28,29,29	0	0	NA	NA	I-E:I-E:I-E	23,25,25	25	TypeI-E	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|262aa|up_2|NZ_CP018082.1_2934493_2935279_-,NA|157aa|down_8|NZ_CP018082.1_2952073_2952544_-	NA|179aa|up_9|NZ_CP018082.1_2925323_2925860_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|650aa|up_8|NZ_CP018082.1_2925995_2927945_+	PRK11504, tynA, primary-amine oxidase	NA|221aa|up_7|NZ_CP018082.1_2928798_2929461_+	pfam09203, MspA, MspA	NA|222aa|up_6|NZ_CP018082.1_2929541_2930207_+	pfam09203, MspA, MspA	NA|252aa|up_5|NZ_CP018082.1_2931427_2932183_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|81aa|up_4|NZ_CP018082.1_2932337_2932580_+	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|225aa|up_3|NZ_CP018082.1_2933770_2934445_+	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|262aa|up_2|NZ_CP018082.1_2934493_2935279_-	NA	NA|122aa|up_1|NZ_CP018082.1_2935350_2935716_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|398aa|up_0|NZ_CP018082.1_2935756_2936950_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas3|919aa|down_0|NZ_CP018082.1_2939346_2942103_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|543aa|down_1|NZ_CP018082.1_2942099_2943728_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|218aa|down_2|NZ_CP018082.1_2943724_2944378_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|375aa|down_3|NZ_CP018082.1_2944383_2945508_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|down_4|NZ_CP018082.1_2945504_2946212_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|229aa|down_5|NZ_CP018082.1_2946211_2946898_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|321aa|down_6|NZ_CP018082.1_2946894_2947857_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|152aa|down_7|NZ_CP018082.1_2947769_2948225_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|157aa|down_8|NZ_CP018082.1_2952073_2952544_-	NA	NA|136aa|down_9|NZ_CP018082.1_2952704_2953112_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	5	2949296-2951217	2,5,2,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Type I-E	GTGCTCCCCGCGCGAGCGGGGATGAGCCC,GTGCTCCCCGCGCGAGCGGGGATGAGCCC,GTGCTCCCCGCGCGAGCGGGGATGAGCCC,GTGCTCCCCGCGCGAGCGGGGATGAGCCC,GTGCTCCCCGCGCGAGCGGGG	29,29,29,29,21	0	0	NA	NA	I-E:I-E:I-E:I-E:NA	29,31,31,29,29	31	TypeI-E	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA,NA|157aa|down_0|NZ_CP018082.1_2952073_2952544_-,NA|219aa|down_4|NZ_CP018082.1_2972841_2973498_+,NA|257aa|down_5|NZ_CP018082.1_2973499_2974270_+	NA|122aa|up_9|NZ_CP018082.1_2935350_2935716_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|398aa|up_8|NZ_CP018082.1_2935756_2936950_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas3|919aa|up_7|NZ_CP018082.1_2939346_2942103_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|543aa|up_6|NZ_CP018082.1_2942099_2943728_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|218aa|up_5|NZ_CP018082.1_2943724_2944378_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|375aa|up_4|NZ_CP018082.1_2944383_2945508_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|NZ_CP018082.1_2945504_2946212_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|229aa|up_2|NZ_CP018082.1_2946211_2946898_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|321aa|up_1|NZ_CP018082.1_2946894_2947857_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|152aa|up_0|NZ_CP018082.1_2947769_2948225_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|157aa|down_0|NZ_CP018082.1_2952073_2952544_-	NA	NA|136aa|down_1|NZ_CP018082.1_2952704_2953112_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|615aa|down_2|NZ_CP018082.1_2954067_2955912_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|5610aa|down_3|NZ_CP018082.1_2955977_2972807_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|219aa|down_4|NZ_CP018082.1_2972841_2973498_+	NA	NA|257aa|down_5|NZ_CP018082.1_2973499_2974270_+	NA	NA|422aa|down_6|NZ_CP018082.1_2974312_2975578_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|4613aa|down_7|NZ_CP018082.1_2975731_2989570_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|5471aa|down_8|NZ_CP018082.1_2989566_3005979_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|179aa|down_9|NZ_CP018082.1_3006036_3006573_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	6	4959942-4960010	6	CRISPRCasFinder	no		c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	CCGAACCCGGCATCGGGATCGTC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|295aa|up_2|NZ_CP018082.1_4957183_4958068_-,NA|58aa|up_0|NZ_CP018082.1_4959097_4959271_-,NA|108aa|down_2|NZ_CP018082.1_4964667_4964991_+,NA|299aa|down_5|NZ_CP018082.1_4971098_4971995_+,NA|208aa|down_8|NZ_CP018082.1_4974137_4974761_+	NA|339aa|up_9|NZ_CP018082.1_4947006_4948023_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|618aa|up_8|NZ_CP018082.1_4948010_4949864_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|324aa|up_7|NZ_CP018082.1_4949875_4950847_+	PLN00139, PLN00139, hypothetical protein; Provisional	NA|723aa|up_6|NZ_CP018082.1_4950843_4953012_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|502aa|up_5|NZ_CP018082.1_4953080_4954586_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|460aa|up_4|NZ_CP018082.1_4954687_4956067_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_3|NZ_CP018082.1_4956120_4957155_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|295aa|up_2|NZ_CP018082.1_4957183_4958068_-	NA	NA|270aa|up_1|NZ_CP018082.1_4958174_4958984_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|58aa|up_0|NZ_CP018082.1_4959097_4959271_-	NA	NA|218aa|down_0|NZ_CP018082.1_4962523_4963177_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|411aa|down_1|NZ_CP018082.1_4963209_4964442_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|108aa|down_2|NZ_CP018082.1_4964667_4964991_+	NA	NA|231aa|down_3|NZ_CP018082.1_4965055_4965748_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|831aa|down_4|NZ_CP018082.1_4965744_4968237_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|299aa|down_5|NZ_CP018082.1_4971098_4971995_+	NA	NA|222aa|down_6|NZ_CP018082.1_4972008_4972674_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|388aa|down_7|NZ_CP018082.1_4972683_4973847_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|208aa|down_8|NZ_CP018082.1_4974137_4974761_+	NA	NA|145aa|down_9|NZ_CP018082.1_4974805_4975240_+	cd07822, SRPBCC_4, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	7	4960383-4960460	7	CRISPRCasFinder	no		c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	CCGAACCCGGCATCGGGATCGTC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|295aa|up_2|NZ_CP018082.1_4957183_4958068_-,NA|58aa|up_0|NZ_CP018082.1_4959097_4959271_-,NA|108aa|down_2|NZ_CP018082.1_4964667_4964991_+,NA|299aa|down_5|NZ_CP018082.1_4971098_4971995_+,NA|208aa|down_8|NZ_CP018082.1_4974137_4974761_+	NA|339aa|up_9|NZ_CP018082.1_4947006_4948023_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|618aa|up_8|NZ_CP018082.1_4948010_4949864_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|324aa|up_7|NZ_CP018082.1_4949875_4950847_+	PLN00139, PLN00139, hypothetical protein; Provisional	NA|723aa|up_6|NZ_CP018082.1_4950843_4953012_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|502aa|up_5|NZ_CP018082.1_4953080_4954586_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|460aa|up_4|NZ_CP018082.1_4954687_4956067_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_3|NZ_CP018082.1_4956120_4957155_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|295aa|up_2|NZ_CP018082.1_4957183_4958068_-	NA	NA|270aa|up_1|NZ_CP018082.1_4958174_4958984_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|58aa|up_0|NZ_CP018082.1_4959097_4959271_-	NA	NA|218aa|down_0|NZ_CP018082.1_4962523_4963177_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|411aa|down_1|NZ_CP018082.1_4963209_4964442_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|108aa|down_2|NZ_CP018082.1_4964667_4964991_+	NA	NA|231aa|down_3|NZ_CP018082.1_4965055_4965748_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|831aa|down_4|NZ_CP018082.1_4965744_4968237_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|299aa|down_5|NZ_CP018082.1_4971098_4971995_+	NA	NA|222aa|down_6|NZ_CP018082.1_4972008_4972674_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|388aa|down_7|NZ_CP018082.1_4972683_4973847_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|208aa|down_8|NZ_CP018082.1_4974137_4974761_+	NA	NA|145aa|down_9|NZ_CP018082.1_4974805_4975240_+	cd07822, SRPBCC_4, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	8	4960527-4960603	8	CRISPRCasFinder	no		c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	CCGAACCCGGCATCGGGATCGTC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|295aa|up_2|NZ_CP018082.1_4957183_4958068_-,NA|58aa|up_0|NZ_CP018082.1_4959097_4959271_-,NA|108aa|down_2|NZ_CP018082.1_4964667_4964991_+,NA|299aa|down_5|NZ_CP018082.1_4971098_4971995_+,NA|208aa|down_8|NZ_CP018082.1_4974137_4974761_+	NA|339aa|up_9|NZ_CP018082.1_4947006_4948023_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|618aa|up_8|NZ_CP018082.1_4948010_4949864_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|324aa|up_7|NZ_CP018082.1_4949875_4950847_+	PLN00139, PLN00139, hypothetical protein; Provisional	NA|723aa|up_6|NZ_CP018082.1_4950843_4953012_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|502aa|up_5|NZ_CP018082.1_4953080_4954586_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|460aa|up_4|NZ_CP018082.1_4954687_4956067_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_3|NZ_CP018082.1_4956120_4957155_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|295aa|up_2|NZ_CP018082.1_4957183_4958068_-	NA	NA|270aa|up_1|NZ_CP018082.1_4958174_4958984_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|58aa|up_0|NZ_CP018082.1_4959097_4959271_-	NA	NA|218aa|down_0|NZ_CP018082.1_4962523_4963177_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|411aa|down_1|NZ_CP018082.1_4963209_4964442_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|108aa|down_2|NZ_CP018082.1_4964667_4964991_+	NA	NA|231aa|down_3|NZ_CP018082.1_4965055_4965748_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|831aa|down_4|NZ_CP018082.1_4965744_4968237_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|299aa|down_5|NZ_CP018082.1_4971098_4971995_+	NA	NA|222aa|down_6|NZ_CP018082.1_4972008_4972674_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|388aa|down_7|NZ_CP018082.1_4972683_4973847_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|208aa|down_8|NZ_CP018082.1_4974137_4974761_+	NA	NA|145aa|down_9|NZ_CP018082.1_4974805_4975240_+	cd07822, SRPBCC_4, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
GCF_001886715.1_ASM188671v1	NZ_CP018082	Nocardia mangyaensis strain Y48 chromosome, complete genome	9	6658838-6659008	9	CRISPRCasFinder	no		c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	Orphan	GGAGCGGGCCCGGCACCAGGGAACCCG	27	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,csa3,DEDDh,WYL,cas3,cas4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	NA|34aa|up_4|NZ_CP018082.1_6654319_6654421_-,NA|280aa|down_1|NZ_CP018082.1_6660985_6661825_+,NA|110aa|down_2|NZ_CP018082.1_6661881_6662211_+,NA|223aa|down_6|NZ_CP018082.1_6665740_6666409_-	NA|288aa|up_9|NZ_CP018082.1_6649565_6650429_-	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|94aa|up_8|NZ_CP018082.1_6650636_6650918_-	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|336aa|up_7|NZ_CP018082.1_6651024_6652032_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|339aa|up_6|NZ_CP018082.1_6652036_6653053_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|362aa|up_5|NZ_CP018082.1_6653049_6654135_-	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|34aa|up_4|NZ_CP018082.1_6654319_6654421_-	NA	NA|63aa|up_3|NZ_CP018082.1_6654707_6654896_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|273aa|up_2|NZ_CP018082.1_6655133_6655952_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|289aa|up_1|NZ_CP018082.1_6655980_6656847_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|286aa|up_0|NZ_CP018082.1_6656930_6657788_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|328aa|down_0|NZ_CP018082.1_6659882_6660866_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|280aa|down_1|NZ_CP018082.1_6660985_6661825_+	NA	NA|110aa|down_2|NZ_CP018082.1_6661881_6662211_+	NA	NA|230aa|down_3|NZ_CP018082.1_6662356_6663046_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|413aa|down_4|NZ_CP018082.1_6663042_6664281_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|288aa|down_5|NZ_CP018082.1_6664727_6665591_-	cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs	NA|223aa|down_6|NZ_CP018082.1_6665740_6666409_-	NA	NA|617aa|down_7|NZ_CP018082.1_6666610_6668461_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|235aa|down_8|NZ_CP018082.1_6668656_6669361_-	pfam14011, ESX-1_EspG, EspG family	NA|436aa|down_9|NZ_CP018082.1_6669357_6670665_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated
