assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886895.1_ASM188689v1	NZ_CP013185	Escherichia coli strain FORC_029 chromosome, complete genome	1	1118122-1118943	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Unclear	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|47aa|up_1|NZ_CP013185.1_1116831_1116972_-,NA	NA|919aa|up_9|NZ_CP013185.1_1104715_1107472_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP013185.1_1107528_1108830_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP013185.1_1108877_1111112_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP013185.1_1111189_1111438_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP013185.1_1111437_1111773_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP013185.1_1111843_1112635_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP013185.1_1112862_1114500_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP013185.1_1114587_1115886_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP013185.1_1116831_1116972_-	NA	NA|224aa|up_0|NZ_CP013185.1_1117110_1117782_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP013185.1_1119581_1121060_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP013185.1_1121086_1122364_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP013185.1_1122682_1123468_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP013185.1_1123537_1124992_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP013185.1_1125013_1126423_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP013185.1_1126400_1127180_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP013185.1_1127143_1128037_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP013185.1_1128184_1128760_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP013185.1_1128776_1129037_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP013185.1_1129027_1130299_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001886895.1_ASM188689v1	NZ_CP013185	Escherichia coli strain FORC_029 chromosome, complete genome	2	1144643-1144732	2	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG	29	0	0	NA	NA	I-E	1	1	TypeI-E	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|245aa|up_9|NZ_CP013185.1_1134642_1135377_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP013185.1_1135641_1135794_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP013185.1_1135987_1138687_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP013185.1_1138784_1140347_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP013185.1_1140343_1140880_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP013185.1_1140891_1141947_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP013185.1_1141957_1142704_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP013185.1_1142685_1143336_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP013185.1_1143332_1144253_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP013185.1_1144252_1144546_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP013185.1_1144813_1145851_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP013185.1_1146102_1147011_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP013185.1_1147012_1148440_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP013185.1_1148439_1149045_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP013185.1_1149094_1149418_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP013185.1_1149611_1149923_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP013185.1_1149941_1150652_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP013185.1_1150651_1151131_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP013185.1_1151127_1152177_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP013185.1_1152157_1152919_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001886895.1_ASM188689v1	NZ_CP013185	Escherichia coli strain FORC_029 chromosome, complete genome	3	2372145-2372268	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA|30aa|down_7|NZ_CP013185.1_2381164_2381254_+	NA|471aa|up_9|NZ_CP013185.1_2361598_2363011_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP013185.1_2363567_2363777_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP013185.1_2364232_2364859_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP013185.1_2364879_2366982_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP013185.1_2366994_2367633_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP013185.1_2367696_2368365_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP013185.1_2368361_2369147_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP013185.1_2369150_2369963_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP013185.1_2369974_2371579_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP013185.1_2371704_2372010_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP013185.1_2372582_2373839_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP013185.1_2373879_2375253_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP013185.1_2375467_2376109_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP013185.1_2376148_2377297_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP013185.1_2377587_2378799_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP013185.1_2378911_2379844_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP013185.1_2379840_2380866_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP013185.1_2381164_2381254_+	NA	NA|390aa|down_8|NZ_CP013185.1_2381419_2382589_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP013185.1_2382734_2383316_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001886895.1_ASM188689v1	NZ_CP013185	Escherichia coli strain FORC_029 chromosome, complete genome	4	3215976-3216067	4	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA|70aa|up_9|NZ_CP013185.1_3205226_3205436_-,NA	NA|70aa|up_9|NZ_CP013185.1_3205226_3205436_-	NA	NA|1321aa|up_8|NZ_CP013185.1_3205490_3209453_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP013185.1_3209492_3210131_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP013185.1_3210418_3211510_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP013185.1_3211509_3212202_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP013185.1_3212213_3212600_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP013185.1_3212607_3213408_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP013185.1_3213417_3214008_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP013185.1_3214018_3214513_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP013185.1_3214533_3215862_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP013185.1_3216490_3217087_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP013185.1_3217107_3217335_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP013185.1_3217372_3218614_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|396aa|down_3|NZ_CP013185.1_3218902_3220090_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP013185.1_3220422_3221343_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP013185.1_3221342_3221648_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP013185.1_3221740_3222340_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP013185.1_3222336_3224883_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP013185.1_3224882_3226055_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP013185.1_3226184_3226877_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001886895.1_ASM188689v1	NZ_CP013185	Escherichia coli strain FORC_029 chromosome, complete genome	5	3566460-3566604	5	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|330aa|up_9|NZ_CP013185.1_3554358_3555348_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP013185.1_3555744_3556653_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP013185.1_3556844_3558866_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP013185.1_3559444_3560122_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP013185.1_3560114_3560870_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP013185.1_3560856_3562011_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP013185.1_3562007_3563048_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP013185.1_3563134_3564424_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP013185.1_3564482_3564959_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP013185.1_3565110_3566394_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP013185.1_3566627_3568889_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP013185.1_3569071_3570505_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP013185.1_3570580_3571633_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP013185.1_3571816_3572770_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP013185.1_3572810_3573806_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP013185.1_3573960_3574779_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP013185.1_3574779_3575838_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP013185.1_3575840_3576530_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP013185.1_3576529_3577303_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP013185.1_3577469_3577619_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001886895.1_ASM188689v1	NZ_CP013185	Escherichia coli strain FORC_029 chromosome, complete genome	6	3806431-3806527	6	CRISPRCasFinder	no		cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|231aa|up_9|NZ_CP013185.1_3798216_3798909_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP013185.1_3799128_3799671_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP013185.1_3800151_3801018_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP013185.1_3801019_3801232_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP013185.1_3801339_3801861_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP013185.1_3801896_3803282_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP013185.1_3803455_3803950_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP013185.1_3803952_3804675_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP013185.1_3804792_3805302_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP013185.1_3805298_3806366_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP013185.1_3806560_3807454_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP013185.1_3807450_3808266_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP013185.1_3808276_3809536_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP013185.1_3809545_3811213_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP013185.1_3811529_3812579_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP013185.1_3812600_3813836_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP013185.1_3813846_3814632_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP013185.1_3814760_3815906_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP013185.1_3815927_3817229_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP013185.1_3817285_3818647_-	PRK08044, PRK08044, allantoinase AllB
