The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013307	Vibrio cholerae strain E506 chromosome 1, complete sequence	2969901	136123	143347	2969901		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|136123_136876_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|136868_137495_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|137494_138430_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|138503_139511_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001895515.1|139603_142192_-	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	25.7	2.2e-33
WP_001279365.1|142459_143347_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 2
NZ_CP013307	Vibrio cholerae strain E506 chromosome 1, complete sequence	2969901	374971	382164	2969901		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|374971_376186_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|376222_376606_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|376666_376990_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|377038_377554_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|377577_379428_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|379441_379780_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|379828_380023_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|380242_381532_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|381735_382164_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_CP013307	Vibrio cholerae strain E506 chromosome 1, complete sequence	2969901	1120278	1157094	2969901	coat	Vibrio_phage(54.17%)	29	NA	NA
WP_149591715.1|1120278_1122384_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1122810_1123158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1123183_1123645_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001895450.1|1123668_1137306_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000492997.1|1138025_1138361_-	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_019830347.1|1138492_1139572_+	replication initiation factor domain-containing protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000842207.1|1139573_1139930_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|1140065_1140314_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_025997813.1|1140420_1141608_+|coat	minor coat protein pIII	coat	A0A023W4K2	Vibrio_virus	100.0	1.8e-200
WP_000979342.1|1141604_1141898_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_050926705.1|1141894_1143094_+	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_001888508.1|1143193_1143970_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_000593519.1|1143966_1144341_+	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_000492997.1|1144948_1145284_-	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_019830347.1|1145415_1146495_+	replication initiation factor domain-containing protein	NA	A0A023W5Z8	Vibrio_virus	100.0	2.2e-213
WP_000842207.1|1146496_1146853_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|1146988_1147237_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_025997813.1|1147343_1148531_+|coat	minor coat protein pIII	coat	A0A023W4K2	Vibrio_virus	100.0	1.8e-200
WP_000979342.1|1148527_1148821_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_050926705.1|1148817_1150017_+	zonula occludens toxin ZOT	NA	A0A023W604	Vibrio_virus	100.0	5.3e-240
WP_001888508.1|1150116_1150893_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	100.0	7.8e-152
WP_145976653.1|1150905_1151265_+	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	1.9e-60
WP_000170634.1|1151498_1152083_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1152075_1152243_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1152320_1153013_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1153142_1153412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1153431_1155000_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1155176_1155728_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1156926_1157094_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
>prophage 4
NZ_CP013307	Vibrio cholerae strain E506 chromosome 1, complete sequence	2969901	2002760	2009377	2969901		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2002760_2003231_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2003495_2004605_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2004645_2005299_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2005303_2006407_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2006432_2006882_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2006981_2008232_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2008243_2009377_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 5
NZ_CP013307	Vibrio cholerae strain E506 chromosome 1, complete sequence	2969901	2374361	2419056	2969901	tRNA,plate,transposase,head,tail	Vibrio_phage(93.18%)	63	NA	NA
WP_000042615.1|2374361_2375378_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000835873.1|2375505_2376186_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_000651337.1|2376205_2376880_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_000744680.1|2377006_2377840_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	49.6	8.9e-69
WP_000050198.1|2377909_2379385_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000439805.1|2379439_2380525_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000818616.1|2380552_2381077_-	shikimate kinase AroK	NA	NA	NA	NA	NA
WP_000788426.1|2381263_2382979_-	type IV pilus secretin PilQ family protein	NA	O80264	Vibrio_phage	22.9	3.1e-15
WP_000792032.1|2383004_2383523_-	pilus assembly protein PilP	NA	NA	NA	NA	NA
WP_000157690.1|2383512_2384103_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA	NA
WP_000902745.1|2384095_2384680_-	PilN domain-containing protein	NA	NA	NA	NA	NA
WP_000959485.1|2384669_2385128_-	type IV pilus assembly protein PilM	NA	NA	NA	NA	NA
WP_000005494.1|2385417_2386155_-	transcriptional regulator	NA	A0A2I7S9A5	Vibrio_phage	61.3	1.4e-81
WP_000373567.1|2386307_2386532_+	helix-turn-helix domain-containing protein	NA	M1PVU4	Vibrio_phage	61.9	2.3e-16
WP_001895336.1|2386543_2388547_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2I7S9A8	Vibrio_phage	69.8	2.2e-275
WP_000800334.1|2388573_2389518_+	AAA family ATPase	NA	M4M9P4	Vibrio_phage	73.7	1.1e-126
WP_000157299.1|2389525_2389750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001216028.1|2389759_2390329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032752.1|2390338_2390713_+	hypothetical protein	NA	M4MB90	Vibrio_phage	59.0	2.9e-27
WP_001192102.1|2390862_2391477_+	DUF3164 family protein	NA	M4MHH7	Vibrio_phage	79.6	2.0e-86
WP_000512064.1|2391486_2391759_+	hypothetical protein	NA	A0A2I7S9G2	Vibrio_phage	61.2	2.9e-21
WP_000551393.1|2391751_2391994_+	hypothetical protein	NA	M4MCS5	Vibrio_phage	62.0	4.2e-19
WP_000413231.1|2391977_2392175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001895326.1|2392327_2392522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000856884.1|2392524_2392794_+	DUF3850 domain-containing protein	NA	C1KFE1	Lactobacillus_virus	47.6	2.5e-12
WP_000762331.1|2392790_2393321_+	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	42.9	2.2e-28
WP_000466681.1|2393400_2393634_+	hypothetical protein	NA	M4M9N5	Vibrio_phage	66.2	4.1e-24
WP_000404914.1|2393636_2393915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000040562.1|2393927_2394473_+	regulatory protein GemA	NA	A0A2I7S9B8	Vibrio_phage	58.2	4.5e-53
WP_000837433.1|2394462_2394909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001029055.1|2394987_2395404_+	hypothetical protein	NA	M4MHG9	Vibrio_phage	50.0	6.3e-31
WP_000493682.1|2395488_2396046_+	hypothetical protein	NA	A0A2I7S9B9	Vibrio_phage	72.1	1.8e-70
WP_001120998.1|2396308_2396908_+	hypothetical protein	NA	M1NVP4	Vibrio_phage	57.3	5.8e-46
WP_001281317.1|2396904_2397135_+	TraR/DksA C4-type zinc finger protein	NA	M4MHG5	Vibrio_phage	63.2	8.8e-19
WP_000362983.1|2397134_2397434_+	DUF2730 family protein	NA	M1Q558	Vibrio_phage	70.0	1.1e-29
WP_000008606.1|2397442_2397733_+	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	82.3	3.9e-40
WP_001195537.1|2397744_2398311_+	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	55.0	3.2e-46
WP_001105344.1|2398311_2399877_+	hypothetical protein	NA	M4MHG0	Vibrio_phage	78.0	4.5e-231
WP_000027033.1|2399873_2401433_+	DUF935 domain-containing protein	NA	M4M9P3	Vibrio_phage	76.1	3.5e-228
WP_001895334.1|2401425_2402199_+	hypothetical protein	NA	M1PVV7	Vibrio_phage	75.5	1.3e-114
WP_000246042.1|2402210_2402459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000638754.1|2402455_2402968_+	hypothetical protein	NA	A0A0F6N5P8	Escherichia_phage	45.6	5.3e-32
WP_000638762.1|2402964_2403600_+	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	47.3	1.7e-40
WP_001249579.1|2403599_2403884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001262460.1|2404216_2405173_+	hypothetical protein	NA	M1Q578	Vibrio_phage	59.8	4.7e-98
WP_001218331.1|2405175_2406075_+|head	Mu-like prophage major head subunit gpT family protein	head	M4MB71	Vibrio_phage	81.4	2.6e-146
WP_000004756.1|2406163_2406739_+	hypothetical protein	NA	M4M9M3	Vibrio_phage	54.5	4.0e-20
WP_001029276.1|2406744_2407179_+	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	88.2	9.6e-67
WP_000513061.1|2407178_2407721_+	phage virion morphogenesis protein	NA	A0A2I7S9D7	Vibrio_phage	74.9	3.3e-72
WP_000100991.1|2407717_2408317_+	hypothetical protein	NA	M4MHF0	Vibrio_phage	61.2	6.4e-69
WP_000437435.1|2408330_2408531_+	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_001128141.1|2408533_2410018_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	M1Q565	Vibrio_phage	72.3	1.5e-207
WP_001895328.1|2410032_2410386_+|tail	phage tail tube protein	tail	A0A2I7S9D5	Vibrio_phage	69.2	7.9e-43
WP_000996598.1|2410385_2410745_+|tail	phage tail assembly protein	tail	A0A2I7S9E0	Vibrio_phage	64.1	5.0e-37
WP_162493705.1|2410951_2412574_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	52.6	6.0e-138
WP_000863380.1|2412585_2413905_+	DNA circularization N-terminal domain-containing protein	NA	A0A2I7S9E8	Vibrio_phage	68.0	5.0e-167
WP_001286435.1|2413897_2414977_+	hypothetical protein	NA	M4M9L5	Vibrio_phage	75.4	3.0e-157
WP_170826454.1|2414970_2415588_+|plate	phage baseplate assembly protein V	plate	M4MCP6	Vibrio_phage	70.2	4.0e-74
WP_000095018.1|2415590_2416040_+	phage GP46 family protein	NA	M4MB61	Vibrio_phage	73.6	1.1e-54
WP_001147110.1|2416029_2417097_+|plate	baseplate J/gp47 family protein	plate	A0A2I7S9E5	Vibrio_phage	72.1	1.6e-147
WP_000510163.1|2417081_2417669_+	DUF2313 domain-containing protein	NA	A0A2I7S9L6	Vibrio_phage	79.5	2.1e-93
WP_001895339.1|2417668_2418520_+	hypothetical protein	NA	Q8HA52	Vibrio_phage	60.4	1.9e-42
WP_001065600.1|2418519_2419056_+	hypothetical protein	NA	H9C146	Vibrio_phage	58.1	6.8e-30
>prophage 1
NZ_CP013308	Vibrio cholerae strain E506 chromosome 2	1092607	524878	529402	1092607		Satellite_phage(66.67%)	7	NA	NA
WP_000743994.1|524878_525958_+	replication initiation factor domain-containing protein	NA	C9E7D5	Vibrio_virus	100.0	2.2e-213
WP_001911551.1|525959_526310_+	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_001888123.1|526403_526628_+	RstC protein	NA	U5TMI6	Satellite_phage	94.6	3.6e-33
WP_005521560.1|526925_527117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743994.1|527652_528732_+	replication initiation factor domain-containing protein	NA	C9E7D5	Vibrio_virus	100.0	2.2e-213
WP_001911551.1|528733_529084_+	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_001888123.1|529177_529402_+	RstC protein	NA	U5TMI6	Satellite_phage	94.6	3.6e-33
