The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013319	Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence	3008486	821309	828502	3008486		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|821309_822524_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|822560_822944_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|823004_823328_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|823376_823892_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_071919680.1|823915_825766_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.9	2.6e-105
WP_001124187.1|825779_826118_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|826166_826361_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|826580_827870_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|828073_828502_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 2
NZ_CP013319	Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence	3008486	1566722	1590669	3008486		Vibrio_phage(84.62%)	15	NA	NA
WP_149591715.1|1566722_1568828_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1569254_1569602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1569627_1570089_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_071919716.1|1570112_1583750_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_071919717.1|1584071_1584440_-	hypothetical protein	NA	G8IRV4	Vibrio_phage	82.6	3.7e-51
WP_001900016.1|1584607_1585162_+	3'-5' exonuclease	NA	W6ASW5	Vibrio_phage	57.8	1.4e-49
WP_000502184.1|1585171_1585375_+	hypothetical protein	NA	C3W4P3	Vibrio_phage	100.0	2.7e-35
WP_044144143.1|1585364_1586468_+	replication initiation factor domain-containing protein	NA	Q64EV8	Vibrio_phage	99.7	4.3e-220
WP_001284206.1|1586472_1586811_+	DUF1293 domain-containing protein	NA	Q858R2	Vibrio_phage	96.4	1.3e-55
WP_001900021.1|1586820_1587051_+	hypothetical protein	NA	G8IRU7	Vibrio_phage	94.7	3.9e-35
WP_000672170.1|1587084_1587294_+	hypothetical protein	NA	G8IRU8	Vibrio_phage	81.2	1.1e-20
WP_001900014.1|1587426_1588761_+	hypothetical protein	NA	G8IRU9	Vibrio_phage	81.4	6.4e-69
WP_001160095.1|1588760_1589105_+	DUF2523 domain-containing protein	NA	Q64EV1	Vibrio_phage	100.0	4.8e-61
WP_001900019.1|1589107_1590475_+	toxin	NA	Q64EV0	Vibrio_phage	99.3	1.5e-259
WP_044144141.1|1590483_1590669_+	hypothetical protein	NA	G8IRV2	Vibrio_phage	91.8	1.3e-20
>prophage 3
NZ_CP013319	Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence	3008486	1888119	1963442	3008486	tail,integrase,tRNA,transposase	Vibrio_phage(50.0%)	58	1897974:1897987	1968557:1968570
WP_001029434.1|1888119_1888851_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_000093315.1|1888854_1889556_+	arginyltransferase	NA	NA	NA	NA	NA
WP_001040192.1|1889639_1889858_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_000584512.1|1890161_1891367_-	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA	NA
WP_000096995.1|1891565_1893848_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_001208101.1|1893903_1894530_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001881528.1|1894797_1894968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000909262.1|1895062_1895974_+	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA	NA
WP_001259524.1|1896018_1896300_+	YnjH family protein	NA	NA	NA	NA	NA
WP_000938025.1|1896280_1897732_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000777169.1|1897764_1898394_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
1897974:1897987	attL	CATCCTTAATGGCA	NA	NA	NA	NA
WP_000603461.1|1898620_1899445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000856384.1|1899458_1900571_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_001211065.1|1900581_1901703_+	DUF4056 domain-containing protein	NA	NA	NA	NA	NA
WP_001894242.1|1901718_1903398_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_000359394.1|1903655_1904954_+	paraquat-inducible protein A	NA	NA	NA	NA	NA
WP_001278820.1|1904965_1906594_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000805968.1|1906590_1907169_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001069849.1|1907384_1908479_+	multidrug efflux RND transporter periplasmic adaptor subunit VexC	NA	NA	NA	NA	NA
WP_000350250.1|1908478_1911529_+	efflux RND transporter permease subunit VexD	NA	NA	NA	NA	NA
WP_000002768.1|1912140_1913376_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	1.2e-146
WP_001881542.1|1913471_1913927_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	58.4	7.8e-43
WP_071919735.1|1914057_1917495_-	restriction endonuclease	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	25.9	7.0e-27
WP_000055826.1|1917485_1918937_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_001252511.1|1918933_1919668_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_000132365.1|1919660_1921781_-	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA	NA
WP_086010879.1|1922675_1923852_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_000502257.1|1926182_1928174_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_000301909.1|1928166_1929579_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_000592367.1|1929579_1930908_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000350101.1|1930924_1933306_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U4	Liberibacter_phage	29.0	5.6e-23
WP_000258536.1|1933446_1935510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251914.1|1935491_1939109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001277248.1|1939181_1940042_+	YafY family transcriptional regulator	NA	NA	NA	NA	NA
WP_001008007.1|1940106_1941177_-	YjhT family mutarotase	NA	NA	NA	NA	NA
WP_001056548.1|1941191_1942346_-	N-acetylneuraminate epimerase	NA	NA	NA	NA	NA
WP_001052933.1|1942527_1943364_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000736956.1|1943492_1944389_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_000233105.1|1944426_1945710_-	sialic acid TRAP transporter large permease SiaM	NA	NA	NA	NA	NA
WP_001889698.1|1945717_1946239_-	sialic acid TRAP transporter small permease SiaQ	NA	NA	NA	NA	NA
WP_000849284.1|1946289_1947255_-	sialic acid TRAP transporter solute-binding subunit SiaP	NA	NA	NA	NA	NA
WP_001889711.1|1947469_1948192_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_001259414.1|1948179_1949043_+	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
WP_071919736.1|1949046_1950183_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_001211490.1|1953098_1953275_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.9	2.8e-09
WP_000148675.1|1953418_1953895_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_000213836.1|1954124_1954820_-	hypothetical protein	NA	A0A2I7S9D9	Vibrio_phage	35.4	1.2e-18
WP_086010879.1|1954816_1955994_-|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_001909624.1|1956036_1956996_-	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	73.1	2.3e-116
WP_000290080.1|1957211_1957571_-|tail	phage tail assembly protein	tail	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
WP_000401420.1|1957619_1957991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000059473.1|1958051_1958630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000035502.1|1958648_1958969_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000879671.1|1958955_1959330_-	middle operon regulator	NA	NA	NA	NA	NA
WP_001059182.1|1959909_1960143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001064711.1|1960139_1960601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001094671.1|1960603_1961713_-	ExeA family protein	NA	A4JWN1	Burkholderia_virus	36.3	2.2e-51
WP_000992438.1|1961684_1963442_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q5ZR04	Pseudomonas_phage	34.5	1.6e-91
1968557:1968570	attR	CATCCTTAATGGCA	NA	NA	NA	NA
>prophage 4
NZ_CP013319	Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence	3008486	2199094	2218785	3008486	tail,plate,terminase,transposase	Vibrio_phage(27.27%)	30	NA	NA
WP_071919752.1|2199094_2199646_-	helix-turn-helix transcriptional regulator	NA	L7P7S1	Pseudomonas_phage	37.6	2.7e-21
WP_032481898.1|2199832_2200051_+	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	66.2	2.4e-18
WP_001900879.1|2200061_2202116_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2P9JZG7	Alteromonadaceae_phage	32.4	6.2e-71
WP_001900914.1|2202112_2203045_+	AAA family ATPase	NA	A0A0C4UQR3	Shigella_phage	30.8	9.7e-32
WP_001900877.1|2203047_2203446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900884.1|2203442_2203661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900870.1|2203660_2203912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900907.1|2203908_2204559_+	DUF3164 family protein	NA	NA	NA	NA	NA
WP_001900878.1|2204569_2204773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900900.1|2204909_2205131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900922.1|2205130_2205496_+	hypothetical protein	NA	A0A2I7RZB2	Vibrio_phage	62.3	8.7e-37
WP_001900869.1|2205498_2206020_+	hypothetical protein	NA	A0A2H5BFX4	Vibrio_phage	73.5	3.2e-64
WP_044144333.1|2206710_2206920_+	SEC-C domain-containing protein	NA	NA	NA	NA	NA
WP_001900927.1|2206912_2207608_+	DUF2786 domain-containing protein	NA	L7P7W8	Pseudomonas_phage	41.7	3.3e-32
WP_001900889.1|2207718_2208969_+	GIY-YIG nuclease family protein	NA	Q9MC01	Enterobacteria_phage	56.4	1.6e-66
WP_001900924.1|2209099_2209381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900873.1|2209377_2209839_+	regulatory protein GemA	NA	NA	NA	NA	NA
WP_001900928.1|2209823_2210099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001900891.1|2210501_2210864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001900904.1|2210865_2211405_-	lysozyme	NA	E5G6N1	Salmonella_phage	43.7	1.9e-27
WP_001900882.1|2211401_2211662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001900871.1|2211686_2212853_-|plate	baseplate J/gp47 family protein	plate	NA	NA	NA	NA
WP_001900929.1|2212854_2213886_-	hypothetical protein	NA	A0A2K9V340	Faecalibacterium_phage	24.1	2.0e-14
WP_001900890.1|2213876_2214095_-|tail	tail protein X	tail	NA	NA	NA	NA
WP_001900885.1|2214091_2214490_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_145926180.1|2214491_2215031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001900912.1|2215075_2215714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001900923.1|2215853_2216405_+	DUF3486 family protein	NA	NA	NA	NA	NA
WP_001900875.1|2216401_2218054_+|terminase	phage terminase large subunit	terminase	A0A0N7AEF1	Bacillus_phage	26.6	5.5e-38
WP_001900915.1|2218062_2218785_+|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
>prophage 5
NZ_CP013319	Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence	3008486	2475752	2482369	3008486		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2475752_2476223_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2476487_2477597_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2477637_2478291_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2478295_2479399_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2479424_2479874_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2479973_2481224_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2481235_2482369_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
