assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	1	72811-72955	1	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA|28aa|down_2|NZ_CP017844.1_75000_75084_-	NA|357aa|up_9|NZ_CP017844.1_57949_59020_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP017844.1_59112_59694_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP017844.1_59698_61516_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP017844.1_61671_63045_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP017844.1_63120_64440_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP017844.1_64846_66142_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP017844.1_66199_66889_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP017844.1_67078_68281_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP017844.1_68277_71424_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP017844.1_71549_72734_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP017844.1_72978_73887_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP017844.1_74011_74923_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP017844.1_75000_75084_-	NA	NA|95aa|down_3|NZ_CP017844.1_75569_75854_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP017844.1_75925_76603_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP017844.1_76860_77052_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP017844.1_77101_77626_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP017844.1_77802_78267_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP017844.1_78386_79196_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP017844.1_79212_80328_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	2	106145-106288	2	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	ACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA	NA|321aa|up_9|NZ_CP017844.1_96631_97594_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_8|NZ_CP017844.1_98209_98881_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_7|NZ_CP017844.1_98890_100087_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_6|NZ_CP017844.1_100064_100646_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_5|NZ_CP017844.1_100647_101421_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_4|NZ_CP017844.1_101607_101883_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP017844.1_101917_103027_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP017844.1_103119_103953_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP017844.1_104178_104718_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP017844.1_104819_106031_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|NZ_CP017844.1_106408_107422_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP017844.1_107418_108369_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP017844.1_108365_109175_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP017844.1_109184_110051_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP017844.1_110068_111013_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_5|NZ_CP017844.1_111014_112679_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP017844.1_112755_113703_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_7|NZ_CP017844.1_113779_114862_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|down_8|NZ_CP017844.1_114984_118059_+	PRK09525, lacZ, beta-galactosidase	NA|418aa|down_9|NZ_CP017844.1_118110_119364_+	PRK09528, lacY, galactoside permease; Reviewed
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	3	1959797-1960048	1	PILER-CR	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA|180aa|down_1|NZ_CP017844.1_1961555_1962095_-	NA|158aa|up_9|NZ_CP017844.1_1949407_1949881_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP017844.1_1949903_1951184_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP017844.1_1951432_1952242_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP017844.1_1952296_1952761_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP017844.1_1952760_1953096_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP017844.1_1953244_1954816_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|433aa|up_3|NZ_CP017844.1_1955190_1956489_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP017844.1_1956504_1957275_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP017844.1_1957304_1958195_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP017844.1_1958291_1959437_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP017844.1_1960346_1961534_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP017844.1_1961555_1962095_-	NA	NA|115aa|down_2|NZ_CP017844.1_1962350_1962695_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP017844.1_1962883_1963822_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP017844.1_1963920_1964910_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP017844.1_1964931_1966263_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP017844.1_1966288_1967497_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP017844.1_1967530_1969825_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP017844.1_1969838_1970228_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP017844.1_1970299_1971664_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	4	2334461-2335141	2,3,1,4,2	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRT	no	cas3	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	11,9,9,9,9	11	Unclear	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA	NA|919aa|up_9|NZ_CP017844.1_2321053_2323810_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP017844.1_2323866_2325168_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP017844.1_2325215_2327450_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP017844.1_2327527_2327776_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP017844.1_2327775_2328111_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP017844.1_2328181_2328973_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP017844.1_2329200_2330838_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP017844.1_2330925_2332224_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP017844.1_2332283_2333156_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP017844.1_2333449_2334121_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP017844.1_2335779_2337258_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP017844.1_2337284_2338562_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP017844.1_2338881_2339667_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP017844.1_2339736_2341191_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP017844.1_2341212_2342622_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP017844.1_2342599_2343379_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP017844.1_2343375_2344236_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP017844.1_2344383_2344959_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP017844.1_2344975_2345236_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP017844.1_2345226_2346498_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	5	2361033-2362220	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas1,cas2	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,19,19	19	TypeI-E	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA	NA|121aa|up_9|NZ_CP017844.1_2346575_2346938_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|NZ_CP017844.1_2347256_2349056_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_7|NZ_CP017844.1_2349055_2350768_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_6|NZ_CP017844.1_2350841_2351576_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_5|NZ_CP017844.1_2351934_2354601_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_4|NZ_CP017844.1_2355015_2356368_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_3|NZ_CP017844.1_2356516_2356999_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_2|NZ_CP017844.1_2357011_2358103_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP017844.1_2359723_2360641_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP017844.1_2360642_2360927_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP017844.1_2362240_2363278_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP017844.1_2363529_2364438_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP017844.1_2364439_2365867_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP017844.1_2365866_2366472_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP017844.1_2366521_2366845_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP017844.1_2367038_2367350_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP017844.1_2367368_2368079_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP017844.1_2368078_2368558_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP017844.1_2368554_2369604_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP017844.1_2369584_2370346_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	6	2878593-2878710	6	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA	NA|62aa|up_9|NZ_CP017844.1_2867878_2868064_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP017844.1_2868076_2868976_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP017844.1_2869168_2870359_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP017844.1_2870355_2871615_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP017844.1_2871604_2873233_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP017844.1_2873505_2874864_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP017844.1_2874868_2875945_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP017844.1_2876407_2877058_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP017844.1_2877111_2877366_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP017844.1_2877365_2878496_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP017844.1_2878729_2881015_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP017844.1_2881710_2885463_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP017844.1_2885590_2886313_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP017844.1_2886459_2889087_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|208aa|down_4|NZ_CP017844.1_2890920_2891544_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1505aa|down_5|NZ_CP017844.1_2891567_2896082_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP017844.1_2896082_2897732_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP017844.1_2897736_2898513_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP017844.1_2898586_2899771_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP017844.1_2899801_2901124_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	7	3486858-3486981	7	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA|30aa|down_7|NZ_CP017844.1_3495877_3495967_+	NA|471aa|up_9|NZ_CP017844.1_3476342_3477755_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|60aa|up_8|NZ_CP017844.1_3478311_3478491_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP017844.1_3478945_3479572_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP017844.1_3479592_3481695_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP017844.1_3481707_3482346_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP017844.1_3482409_3483078_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP017844.1_3483074_3483860_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP017844.1_3483863_3484676_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP017844.1_3484687_3486292_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP017844.1_3486417_3486723_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP017844.1_3487295_3488552_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP017844.1_3488592_3489966_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP017844.1_3490180_3490822_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP017844.1_3490861_3492010_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP017844.1_3492300_3493512_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP017844.1_3493624_3494557_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP017844.1_3494553_3495579_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP017844.1_3495877_3495967_+	NA	NA|390aa|down_8|NZ_CP017844.1_3496132_3497302_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP017844.1_3497536_3498118_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	8	4128322-4128413	8	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA|70aa|up_9|NZ_CP017844.1_4117398_4117608_-,NA	NA|70aa|up_9|NZ_CP017844.1_4117398_4117608_-	NA	NA|1321aa|up_8|NZ_CP017844.1_4117662_4121625_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP017844.1_4121664_4122303_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP017844.1_4122590_4123682_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP017844.1_4123681_4124374_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP017844.1_4124385_4124772_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP017844.1_4124779_4125580_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP017844.1_4125589_4126180_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP017844.1_4126190_4126685_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP017844.1_4126705_4128034_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP017844.1_4128836_4129433_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP017844.1_4129453_4129681_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP017844.1_4129718_4130960_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP017844.1_4131252_4132509_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP017844.1_4132769_4133690_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP017844.1_4133689_4133995_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP017844.1_4134146_4134746_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP017844.1_4134742_4137289_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP017844.1_4137288_4138461_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP017844.1_4138590_4139283_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	9	4272300-4272383	9	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA	NA|431aa|up_9|NZ_CP017844.1_4257378_4258671_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP017844.1_4258761_4260105_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP017844.1_4260115_4260727_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|NZ_CP017844.1_4260881_4264910_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP017844.1_4265044_4265539_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP017844.1_4266083_4267049_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP017844.1_4267171_4268938_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP017844.1_4268938_4270660_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP017844.1_4270701_4271406_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP017844.1_4271690_4271909_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP017844.1_4272594_4274871_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP017844.1_4274901_4275222_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP017844.1_4275544_4275769_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP017844.1_4275841_4277788_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP017844.1_4277784_4278900_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP017844.1_4279050_4280007_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP017844.1_4280003_4281662_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP017844.1_4282087_4282783_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP017844.1_4283277_4284177_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP017844.1_4284320_4285973_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	10	4407000-4407144	10	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA|56aa|up_3|NZ_CP017844.1_4404042_4404210_+,NA	NA|62aa|up_9|NZ_CP017844.1_4398803_4398989_-	pfam06085, Rz1, Lipoprotein Rz1 precursor	NA|166aa|up_8|NZ_CP017844.1_4399205_4399703_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|72aa|up_7|NZ_CP017844.1_4399702_4399918_-	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|244aa|up_6|NZ_CP017844.1_4400105_4400837_-	PRK09940, PRK09940, transcriptional regulator YdeO; Provisional	NA|320aa|up_5|NZ_CP017844.1_4401188_4402148_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP017844.1_4403530_4403959_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NZ_CP017844.1_4404042_4404210_+	NA	NA|73aa|up_2|NZ_CP017844.1_4404249_4404468_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP017844.1_4404445_4405516_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP017844.1_4405650_4406934_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP017844.1_4407167_4409429_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP017844.1_4409611_4411045_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP017844.1_4411120_4412173_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP017844.1_4412356_4413310_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP017844.1_4413350_4414346_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP017844.1_4414500_4415319_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP017844.1_4415319_4416378_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP017844.1_4416380_4417070_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP017844.1_4417069_4417843_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP017844.1_4418009_4418159_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001888075.1_ASM188807v1	NZ_CP017844	Escherichia coli strain FMU073332 chromosome, complete genome	11	4658341-4658437	11	CRISPRCasFinder	no		DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DinG	NA,NA	NA|388aa|up_9|NZ_CP017844.1_4648649_4649813_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|339aa|up_8|NZ_CP017844.1_4650691_4651708_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|289aa|up_7|NZ_CP017844.1_4652061_4652928_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP017844.1_4652929_4653142_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP017844.1_4653249_4653771_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP017844.1_4653806_4655192_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP017844.1_4655365_4655860_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP017844.1_4655862_4656585_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP017844.1_4656702_4657212_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP017844.1_4657208_4658276_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP017844.1_4658470_4659364_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP017844.1_4659360_4660176_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP017844.1_4660186_4661446_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|down_3|NZ_CP017844.1_4665439_4666255_-	PRK10163, PRK10163, HTH-type transcriptional repressor AllR	NA|161aa|down_4|NZ_CP017844.1_4666332_4666815_-	COG3194, DAL3, Ureidoglycolate hydrolase [Nucleotide transport and metabolism]	NA|309aa|down_5|NZ_CP017844.1_4667044_4667971_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|365aa|down_6|NZ_CP017844.1_4668039_4669134_+	COG2603, COG2603, Predicted ATPase [General function prediction only]	NA|524aa|down_7|NZ_CP017844.1_4670948_4672520_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_8|NZ_CP017844.1_4672539_4672887_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|226aa|down_9|NZ_CP017844.1_4672886_4673564_-	pfam01527, HTH_Tnp_1, Transposase
