assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001890265.1_ASM189026v1	NZ_CP018243	Escherichia coli strain 350 chromosome, complete genome	1	71491-71625	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|251aa|up_4|NZ_CP018243.1_63444_64197_+,NA|190aa|down_7|NZ_CP018243.1_80666_81236_+	NA|274aa|up_9|NZ_CP018243.1_56579_57401_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP018243.1_57397_58387_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP018243.1_58386_59673_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP018243.1_59725_62080_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP018243.1_62334_63150_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP018243.1_63444_64197_+	NA	NA|220aa|up_3|NZ_CP018243.1_64614_65274_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP018243.1_65285_68192_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP018243.1_68355_70707_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP018243.1_70781_71477_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP018243.1_71676_73179_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP018243.1_73189_74890_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP018243.1_75228_76107_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP018243.1_76192_76957_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP018243.1_77043_77742_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP018243.1_77725_79336_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP018243.1_79311_80295_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP018243.1_80666_81236_+	NA	NA|553aa|down_8|NZ_CP018243.1_81464_83123_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP018243.1_83211_83343_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_001890265.1_ASM189026v1	NZ_CP018243	Escherichia coli strain 350 chromosome, complete genome	2	3538484-3538696	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP018243.1_3530296_3531058_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP018243.1_3531038_3532088_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP018243.1_3532084_3532564_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP018243.1_3532563_3533274_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP018243.1_3533292_3533604_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP018243.1_3533797_3534121_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP018243.1_3534170_3534776_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP018243.1_3534775_3536203_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP018243.1_3536204_3537113_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP018243.1_3537364_3538402_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP018243.1_3538791_3539085_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP018243.1_3539081_3540005_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP018243.1_3540001_3540652_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP018243.1_3540633_3541380_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP018243.1_3541390_3542446_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP018243.1_3542457_3542994_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP018243.1_3542990_3544553_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP018243.1_3544650_3547350_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP018243.1_3547541_3547694_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP018243.1_3547957_3548692_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001890265.1_ASM189026v1	NZ_CP018243	Escherichia coli strain 350 chromosome, complete genome	3	3564387-3564475	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|600aa|up_9|NZ_CP018243.1_3550477_3552277_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_8|NZ_CP018243.1_3552595_3552958_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP018243.1_3553035_3554307_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP018243.1_3554297_3554558_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP018243.1_3554574_3555150_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP018243.1_3556154_3556934_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP018243.1_3558341_3559796_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP018243.1_3559865_3560651_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP018243.1_3560969_3562247_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP018243.1_3562273_3563752_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP018243.1_3564814_3565486_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP018243.1_3565640_3566261_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP018243.1_3566274_3566949_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP018243.1_3567182_3568331_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP018243.1_3568327_3569242_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP018243.1_3569301_3570600_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP018243.1_3570687_3572325_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP018243.1_3572552_3573344_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP018243.1_3573414_3573750_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP018243.1_3573749_3573998_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_001890265.1_ASM189026v1	NZ_CP018243	Escherichia coli strain 350 chromosome, complete genome	4	5252096-5252245	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|591aa|up_6|NZ_CP018243.1_5243225_5244998_+,NA	NA|238aa|up_9|NZ_CP018243.1_5241128_5241842_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP018243.1_5241912_5242506_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP018243.1_5242650_5243103_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|591aa|up_6|NZ_CP018243.1_5243225_5244998_+	NA	NA|335aa|up_5|NZ_CP018243.1_5245054_5246059_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP018243.1_5246220_5246637_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP018243.1_5246682_5247186_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP018243.1_5247378_5248575_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP018243.1_5248629_5251485_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP018243.1_5251484_5251928_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP018243.1_5252281_5253793_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP018243.1_5254059_5255160_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP018243.1_5255159_5256242_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP018243.1_5256402_5257905_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP018243.1_5258034_5259054_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|653aa|down_5|NZ_CP018243.1_5259424_5261383_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|126aa|down_6|NZ_CP018243.1_5262783_5263161_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_7|NZ_CP018243.1_5263282_5263615_-	pfam07978, NIPSNAP, NIPSNAP	NA|156aa|down_8|NZ_CP018243.1_5264618_5265086_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|190aa|down_9|NZ_CP018243.1_5265278_5265848_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
