assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001890425.1_ASM189042v1	NZ_CP018228	Rhizobium leguminosarum strain Vaf-108 chromosome, complete genome	1	1025717-1026867	1	CRT	no		csa3,RT,DEDDh,cas3,WYL,cas2,cas1,cas4,cas3HD	Orphan	TTGCCGCCGCCNTNGCCGCCNCCGTTGCCG	30	10	93	1025747-1025884|1025747-1025884|1025747-1025884|1025747-1025884|1025747-1025884|1025747-1025884|1025747-1025884|1025747-1025884|1025915-1026040|1025915-1026040|1025915-1026040|1025915-1026040|1025915-1026040|1025915-1026040|1025915-1026040|1025915-1026040|1026208-1026297|1026208-1026297|1026208-1026297|1026208-1026297|1026208-1026297|1026208-1026297|1026208-1026297|1026208-1026297|1026328-1026393|1026328-1026393|1026328-1026393|1026328-1026393|1026328-1026393|1026328-1026393|1026328-1026393|1026328-1026393|1026424-1026477|1026424-1026477|1026424-1026477|1026424-1026477|1026424-1026477|1026424-1026477|1026424-1026477|1026424-1026477|1026508-1026525|1026508-1026525|1026508-1026525|1026508-1026525|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026616-1026633|1026724-1026741|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026772-1026789|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837|1026820-1026837	NZ_CP018228.1_1025627-1025764|NZ_CP018228.1_1025639-1025776|NZ_CP018228.1_1025651-1025788|NZ_CP018228.1_1025663-1025800|NZ_CP018228.1_1025675-1025812|NZ_CP018228.1_1025687-1025824|NZ_CP018228.1_1025699-1025836|NZ_CP018228.1_1025711-1025848|NZ_CP018228.1_1025627-1025752|NZ_CP018228.1_1025639-1025764|NZ_CP018228.1_1025651-1025776|NZ_CP018228.1_1025663-1025788|NZ_CP018228.1_1025675-1025800|NZ_CP018228.1_1025687-1025812|NZ_CP018228.1_1025699-1025824|NZ_CP018228.1_1025711-1025836|NZ_CP018228.1_1025627-1025716|NZ_CP018228.1_1025639-1025728|NZ_CP018228.1_1025651-1025740|NZ_CP018228.1_1025663-1025752|NZ_CP018228.1_1025675-1025764|NZ_CP018228.1_1025687-1025776|NZ_CP018228.1_1025699-1025788|NZ_CP018228.1_1025711-1025800|NZ_CP018228.1_1025627-1025692|NZ_CP018228.1_1025639-1025704|NZ_CP018228.1_1025651-1025716|NZ_CP018228.1_1025663-1025728|NZ_CP018228.1_1025675-1025740|NZ_CP018228.1_1025687-1025752|NZ_CP018228.1_1025699-1025764|NZ_CP018228.1_1025711-1025776|NZ_CP018228.1_1025627-1025680|NZ_CP018228.1_1025639-1025692|NZ_CP018228.1_1025651-1025704|NZ_CP018228.1_1025663-1025716|NZ_CP018228.1_1025675-1025728|NZ_CP018228.1_1025687-1025740|NZ_CP018228.1_1025699-1025752|NZ_CP018228.1_1025711-1025764|NZ_CP018228.1_4656716-4656733|NZ_CP018229.1_539048-539031|NZ_CP018230.1_293944-293927|NZ_CP018233.1_75779-75762|NZ_CP018228.1_1025627-1025644|NZ_CP018228.1_1025639-1025656|NZ_CP018228.1_1025651-1025668|NZ_CP018228.1_1025663-1025680|NZ_CP018228.1_1025675-1025692|NZ_CP018228.1_1025687-1025704|NZ_CP018228.1_1025699-1025716|NZ_CP018228.1_1025711-1025728|NZ_CP018229.1_383476-383493|NZ_CP018229.1_722859-722876|NZ_CP018229.1_1314258-1314275|NZ_CP018230.1_68058-68075|NZ_CP018233.1_93012-92995|NZ_CP018230.1_345552-345569|NZ_CP018228.1_807268-807251|NZ_CP018228.1_1025627-1025644|NZ_CP018228.1_1025639-1025656|NZ_CP018228.1_1025651-1025668|NZ_CP018228.1_1025663-1025680|NZ_CP018228.1_1025675-1025692|NZ_CP018228.1_1025687-1025704|NZ_CP018228.1_1025699-1025716|NZ_CP018228.1_1025711-1025728|NZ_CP018229.1_207383-207366|NZ_CP018229.1_1164399-1164382|NZ_CP018230.1_68058-68075|NZ_CP018230.1_436169-436152|NZ_CP018230.1_502949-502966|NZ_CP018232.1_212623-212640|NZ_CP018234.1_44107-44090|NZ_CP018228.1_1025627-1025644|NZ_CP018228.1_1025639-1025656|NZ_CP018228.1_1025651-1025668|NZ_CP018228.1_1025663-1025680|NZ_CP018228.1_1025675-1025692|NZ_CP018228.1_1025687-1025704|NZ_CP018228.1_1025699-1025716|NZ_CP018228.1_1025711-1025728|NZ_CP018228.1_2510746-2510729|NZ_CP018229.1_383476-383493|NZ_CP018229.1_426015-425998|NZ_CP018229.1_481893-481910|NZ_CP018229.1_737170-737153|NZ_CP018229.1_1043882-1043899|NZ_CP018230.1_68058-68075|NZ_CP018230.1_62746-62729|NZ_CP018230.1_436169-436152|NZ_CP018230.1_449744-449761|NZ_CP018232.1_185955-185938	NA	13	13	Orphan	csa3,RT,DEDDh,cas3,WYL,cas2,cas1,cas4,cas3HD	NA|60aa|up_5|NZ_CP018228.1_1020473_1020653_-,NA|124aa|down_2|NZ_CP018228.1_1028425_1028797_-,NA|134aa|down_3|NZ_CP018228.1_1029247_1029649_+	NA|444aa|up_9|NZ_CP018228.1_1016001_1017333_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|128aa|up_8|NZ_CP018228.1_1017576_1017960_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|109aa|up_7|NZ_CP018228.1_1018441_1018768_+	COG5455, COG5455, Predicted integral membrane protein [Function unknown]	NA|324aa|up_6|NZ_CP018228.1_1019212_1020184_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|60aa|up_5|NZ_CP018228.1_1020473_1020653_-	NA	NA|402aa|up_4|NZ_CP018228.1_1020649_1021855_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|353aa|up_3|NZ_CP018228.1_1022002_1023061_-	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]	NA|304aa|up_2|NZ_CP018228.1_1023163_1024075_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|272aa|up_1|NZ_CP018228.1_1024067_1024883_+	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|133aa|up_0|NZ_CP018228.1_1024879_1025278_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|192aa|down_0|NZ_CP018228.1_1027330_1027906_+	pfam06035, Peptidase_C93, Bacterial transglutaminase-like cysteine proteinase BTLCP	NA|133aa|down_1|NZ_CP018228.1_1027995_1028394_+	COG5485, COG5485, Predicted ester cyclase [General function prediction only]	NA|124aa|down_2|NZ_CP018228.1_1028425_1028797_-	NA	NA|134aa|down_3|NZ_CP018228.1_1029247_1029649_+	NA	NA|242aa|down_4|NZ_CP018228.1_1029720_1030446_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|444aa|down_5|NZ_CP018228.1_1030640_1031972_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|461aa|down_6|NZ_CP018228.1_1032221_1033604_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|177aa|down_7|NZ_CP018228.1_1033795_1034326_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]	NA|232aa|down_8|NZ_CP018228.1_1034336_1035032_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|256aa|down_9|NZ_CP018228.1_1035316_1036084_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins
GCF_001890425.1_ASM189042v1	NZ_CP018228	Rhizobium leguminosarum strain Vaf-108 chromosome, complete genome	2	4204850-4205148	1,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3HD	csa3,RT,DEDDh,cas3,WYL,cas2,cas1,cas4,cas3HD	Unclear	GTTTCTATCCACGCCTCCGTACA,GTTTCTATCCACGCCTCCGNNNAGGAGGCGAC,GTTTCTATCCACGCCTCCGT	23,32,20	0	0	NA	NA	NA:NA:NA	4,4,2	4	Unclear	csa3,RT,DEDDh,cas3,WYL,cas2,cas1,cas4,cas3HD	NA|158aa|up_6|NZ_CP018228.1_4199193_4199667_+,NA	NA|172aa|up_9|NZ_CP018228.1_4196920_4197436_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|140aa|up_8|NZ_CP018228.1_4197737_4198157_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|212aa|up_7|NZ_CP018228.1_4198273_4198909_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|158aa|up_6|NZ_CP018228.1_4199193_4199667_+	NA	NA|263aa|up_5|NZ_CP018228.1_4199772_4200561_-	cd06259, YdcF-like, YdcF-like	NA|241aa|up_4|NZ_CP018228.1_4200630_4201353_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	cas2|97aa|up_3|NZ_CP018228.1_4201760_4202051_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|up_2|NZ_CP018228.1_4202059_4203094_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|224aa|up_1|NZ_CP018228.1_4203090_4203762_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas3HD|274aa|up_0|NZ_CP018228.1_4203958_4204780_-	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	NA|98aa|down_0|NZ_CP018228.1_4205919_4206213_-	cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its homologs	NA|127aa|down_1|NZ_CP018228.1_4206540_4206921_-	COG4530, COG4530, Uncharacterized protein conserved in bacteria [Function unknown]	NA|453aa|down_2|NZ_CP018228.1_4207196_4208555_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|216aa|down_3|NZ_CP018228.1_4208627_4209275_+	PRK00023, cmk, (d)CMP kinase	NA|568aa|down_4|NZ_CP018228.1_4209449_4211153_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|514aa|down_5|NZ_CP018228.1_4211231_4212773_-	PRK10811, rne, ribonuclease E; Reviewed	NA|209aa|down_6|NZ_CP018228.1_4213004_4213631_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|270aa|down_7|NZ_CP018228.1_4213788_4214598_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|427aa|down_8|NZ_CP018228.1_4214765_4216046_+	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase	NA|494aa|down_9|NZ_CP018228.1_4216112_4217594_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like
GCF_001890425.1_ASM189042v1	NZ_CP018228	Rhizobium leguminosarum strain Vaf-108 chromosome, complete genome	3	4205293-4205661	2,2	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas3HD	csa3,RT,DEDDh,cas3,WYL,cas2,cas1,cas4,cas3HD	Unclear	GTTTCTATCCACGCCTCCGTACA,GTTTCTATCCACGCCTCCGCGCAGGGAGGCGAC	23,33	0	0	NA	NA	NA:NA	3,3	3	Unclear	csa3,RT,DEDDh,cas3,WYL,cas2,cas1,cas4,cas3HD	NA|158aa|up_6|NZ_CP018228.1_4199193_4199667_+,NA	NA|172aa|up_9|NZ_CP018228.1_4196920_4197436_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|140aa|up_8|NZ_CP018228.1_4197737_4198157_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|212aa|up_7|NZ_CP018228.1_4198273_4198909_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|158aa|up_6|NZ_CP018228.1_4199193_4199667_+	NA	NA|263aa|up_5|NZ_CP018228.1_4199772_4200561_-	cd06259, YdcF-like, YdcF-like	NA|241aa|up_4|NZ_CP018228.1_4200630_4201353_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	cas2|97aa|up_3|NZ_CP018228.1_4201760_4202051_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|up_2|NZ_CP018228.1_4202059_4203094_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|224aa|up_1|NZ_CP018228.1_4203090_4203762_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas3HD|274aa|up_0|NZ_CP018228.1_4203958_4204780_-	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	NA|98aa|down_0|NZ_CP018228.1_4205919_4206213_-	cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its homologs	NA|127aa|down_1|NZ_CP018228.1_4206540_4206921_-	COG4530, COG4530, Uncharacterized protein conserved in bacteria [Function unknown]	NA|453aa|down_2|NZ_CP018228.1_4207196_4208555_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|216aa|down_3|NZ_CP018228.1_4208627_4209275_+	PRK00023, cmk, (d)CMP kinase	NA|568aa|down_4|NZ_CP018228.1_4209449_4211153_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|514aa|down_5|NZ_CP018228.1_4211231_4212773_-	PRK10811, rne, ribonuclease E; Reviewed	NA|209aa|down_6|NZ_CP018228.1_4213004_4213631_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|270aa|down_7|NZ_CP018228.1_4213788_4214598_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|427aa|down_8|NZ_CP018228.1_4214765_4216046_+	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase	NA|494aa|down_9|NZ_CP018228.1_4216112_4217594_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like
