assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	1	366612-367310	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366900-366941|366975-367007	NZ_CP018301.1_374931-374972|NZ_CP018301.1_373746-373778	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP018301.1_363624_363927_+,NA|161aa|down_1|NZ_CP018301.1_376720_377203_-,NA|410aa|down_5|NZ_CP018301.1_379319_380549_+	NA|262aa|up_9|NZ_CP018301.1_358319_359105_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP018301.1_359093_359897_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP018301.1_359906_361304_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP018301.1_361482_363258_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP018301.1_363400_363628_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP018301.1_363624_363927_+	NA	NA|74aa|up_3|NZ_CP018301.1_363974_364196_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP018301.1_364192_364618_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP018301.1_364753_365386_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP018301.1_365382_366291_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP018301.1_376061_376733_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP018301.1_376720_377203_-	NA	NA|239aa|down_2|NZ_CP018301.1_377260_377977_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP018301.1_378078_378735_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP018301.1_378804_379296_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP018301.1_379319_380549_+	NA	NA|621aa|down_6|NZ_CP018301.1_380703_382566_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP018301.1_382637_383024_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP018301.1_383026_383689_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP018301.1_383749_384634_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	2	581817-581934	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GATGACCTGCGCCGACGACGATGCAGAGCGTAGCGATGAGG	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|110aa|down_2|NZ_CP018301.1_584513_584843_-,NA|330aa|down_3|NZ_CP018301.1_584839_585829_-,NA|297aa|down_5|NZ_CP018301.1_586562_587453_-,NA|311aa|down_7|NZ_CP018301.1_588515_589448_+	NA|281aa|up_9|NZ_CP018301.1_570319_571162_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|175aa|up_8|NZ_CP018301.1_571343_571868_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|370aa|up_7|NZ_CP018301.1_571894_573004_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|452aa|up_6|NZ_CP018301.1_573065_574421_+	pfam17964, Big_10, Bacterial Ig domain	NA|252aa|up_5|NZ_CP018301.1_574401_575157_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|439aa|up_4|NZ_CP018301.1_575339_576656_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|481aa|up_3|NZ_CP018301.1_576703_578146_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|184aa|up_2|NZ_CP018301.1_578142_578694_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|202aa|up_1|NZ_CP018301.1_578903_579509_+	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498	NA|250aa|up_0|NZ_CP018301.1_579665_580415_+	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|228aa|down_0|NZ_CP018301.1_581947_582631_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|630aa|down_1|NZ_CP018301.1_582627_584517_-	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|110aa|down_2|NZ_CP018301.1_584513_584843_-	NA	NA|330aa|down_3|NZ_CP018301.1_584839_585829_-	NA	NA|243aa|down_4|NZ_CP018301.1_585833_586562_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|297aa|down_5|NZ_CP018301.1_586562_587453_-	NA	NA|329aa|down_6|NZ_CP018301.1_587532_588519_+	pfam02541, Ppx-GppA, Ppx/GppA phosphatase family	NA|311aa|down_7|NZ_CP018301.1_588515_589448_+	NA	NA|281aa|down_8|NZ_CP018301.1_589463_590306_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|292aa|down_9|NZ_CP018301.1_590321_591197_+	pfam13622, 4HBT_3, Thioesterase-like superfamily
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	3	693248-693324	3	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP018301.1_679143_679551_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP018301.1_679610_680297_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP018301.1_680450_683084_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP018301.1_683106_685494_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP018301.1_685631_686354_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP018301.1_686350_687148_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP018301.1_687149_688037_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP018301.1_688042_689257_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NZ_CP018301.1_690280_691726_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NZ_CP018301.1_691722_693159_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP018301.1_694459_696010_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP018301.1_696061_696454_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP018301.1_696450_696708_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP018301.1_696890_698126_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP018301.1_698376_698790_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP018301.1_698786_699023_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP018301.1_699126_699633_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP018301.1_699746_700217_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP018301.1_700260_701022_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP018301.1_701078_701390_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	4	926863-927810	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927646-927681|927646-927681|927646-927681	NZ_CP018301.1_676350-676315|NZ_CP018301.1_1212069-1212104|NZ_CP018301.1_2413213-2413178	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP018301.1_931811_932363_-,NA|81aa|down_8|NZ_CP018301.1_937826_938069_+	NA|685aa|up_9|NZ_CP018301.1_914499_916554_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP018301.1_916719_917889_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP018301.1_917976_918993_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP018301.1_919154_919796_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP018301.1_919876_920932_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP018301.1_920983_921376_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP018301.1_921433_921856_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP018301.1_921817_922108_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP018301.1_922212_923118_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP018301.1_923136_923952_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP018301.1_928079_930719_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP018301.1_931186_931831_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP018301.1_931811_932363_-	NA	NA|218aa|down_3|NZ_CP018301.1_932512_933166_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP018301.1_933236_934265_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP018301.1_934953_935724_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP018301.1_935810_936623_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP018301.1_936690_937551_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP018301.1_937826_938069_+	NA	NA|431aa|down_9|NZ_CP018301.1_938345_939638_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	5	1569036-1570108	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1569236-1569257	NZ_CP018301.1_1210365-1210344	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP018301.1_1560799_1561117_+,NA	NA|103aa|up_9|NZ_CP018301.1_1558314_1558623_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP018301.1_1558619_1560239_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP018301.1_1560799_1561117_+	NA	NA|209aa|up_6|NZ_CP018301.1_1561251_1561878_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP018301.1_1561943_1562276_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP018301.1_1562291_1563548_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP018301.1_1563675_1564887_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP018301.1_1564959_1566438_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP018301.1_1566434_1567820_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP018301.1_1567897_1568932_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP018301.1_1570961_1571363_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP018301.1_1571359_1571617_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP018301.1_1571699_1572659_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP018301.1_1572683_1573646_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP018301.1_1573779_1574382_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP018301.1_1574462_1576430_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP018301.1_1576447_1577272_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP018301.1_1577440_1577923_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP018301.1_1577994_1578819_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP018301.1_1579015_1579954_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	6	1633726-1633952	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP018301.1_1620000_1620114_-,NA|137aa|up_7|NZ_CP018301.1_1620163_1620574_-,NA|288aa|down_2|NZ_CP018301.1_1637778_1638642_+	NA|162aa|up_9|NZ_CP018301.1_1619083_1619569_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP018301.1_1620000_1620114_-	NA	NA|137aa|up_7|NZ_CP018301.1_1620163_1620574_-	NA	NA|248aa|up_6|NZ_CP018301.1_1620590_1621334_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP018301.1_1621330_1622242_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP018301.1_1622294_1623839_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP018301.1_1623835_1624957_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP018301.1_1624973_1627076_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1408aa|up_1|NZ_CP018301.1_1627514_1631738_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP018301.1_1632139_1633066_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP018301.1_1635479_1636745_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP018301.1_1636772_1637759_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP018301.1_1637778_1638642_+	NA	NA|311aa|down_3|NZ_CP018301.1_1638591_1639524_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP018301.1_1639635_1640421_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP018301.1_1640417_1641359_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP018301.1_1641461_1643237_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP018301.1_1643284_1644091_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP018301.1_1644087_1646628_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP018301.1_1646624_1647818_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	7	2074123-2074377	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2074204-2074221|2074204-2074221|2074294-2074311	NZ_CP018301.1_401227-401210|NZ_CP018301.1_608576-608559|NZ_CP018301.1_3431248-3431231	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP018301.1_2073482_2073746_-,NA	NA|248aa|up_9|NZ_CP018301.1_2059025_2059769_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP018301.1_2059887_2060382_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_7|NZ_CP018301.1_2060673_2061351_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NZ_CP018301.1_2061709_2064535_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NZ_CP018301.1_2064761_2065622_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NZ_CP018301.1_2065662_2066529_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NZ_CP018301.1_2068436_2070470_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP018301.1_2070589_2072815_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP018301.1_2073090_2073486_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP018301.1_2073482_2073746_-	NA	NA|346aa|down_0|NZ_CP018301.1_2075514_2076552_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP018301.1_2076551_2077919_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP018301.1_2078092_2079529_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP018301.1_2079564_2081016_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP018301.1_2081045_2081996_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP018301.1_2082010_2082427_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP018301.1_2082704_2083127_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP018301.1_2083175_2083478_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP018301.1_2083474_2083789_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP018301.1_2083788_2085522_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	8	2154783-2155002	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP018301.1_2145819_2146227_-,NA|127aa|down_5|NZ_CP018301.1_2162518_2162899_-	NA|216aa|up_9|NZ_CP018301.1_2139133_2139781_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP018301.1_2139787_2142010_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP018301.1_2142047_2142491_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP018301.1_2142604_2143198_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP018301.1_2143280_2143886_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP018301.1_2143985_2144990_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP018301.1_2145089_2145842_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP018301.1_2145819_2146227_-	NA	NA|767aa|up_1|NZ_CP018301.1_2146361_2148662_+	PLN02892, PLN02892, isocitrate lyase	NA|1483aa|up_0|NZ_CP018301.1_2148831_2153280_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP018301.1_2157029_2157494_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP018301.1_2157591_2158455_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP018301.1_2158492_2159764_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP018301.1_2160035_2161151_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP018301.1_2161141_2162482_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP018301.1_2162518_2162899_-	NA	NA|621aa|down_6|NZ_CP018301.1_2163055_2164918_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP018301.1_2164925_2165405_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP018301.1_2165641_2166415_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP018301.1_2167208_2167853_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	9	3099371-3100653	2,6,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,16,17	17	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP018301.1_3092650_3092905_-,NA|135aa|up_7|NZ_CP018301.1_3093052_3093457_+,NA|64aa|up_6|NZ_CP018301.1_3093453_3093645_+,NA|86aa|up_4|NZ_CP018301.1_3095231_3095489_+,NA|104aa|up_3|NZ_CP018301.1_3095593_3095905_+,NA|203aa|up_2|NZ_CP018301.1_3096324_3096933_+,NA	NA|92aa|up_9|NZ_CP018301.1_3092199_3092475_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP018301.1_3092650_3092905_-	NA	NA|135aa|up_7|NZ_CP018301.1_3093052_3093457_+	NA	NA|64aa|up_6|NZ_CP018301.1_3093453_3093645_+	NA	NA|385aa|up_5|NZ_CP018301.1_3093843_3094998_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP018301.1_3095231_3095489_+	NA	NA|104aa|up_3|NZ_CP018301.1_3095593_3095905_+	NA	NA|203aa|up_2|NZ_CP018301.1_3096324_3096933_+	NA	NA|470aa|up_1|NZ_CP018301.1_3097003_3098413_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP018301.1_3098409_3099222_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP018301.1_3100679_3101941_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP018301.1_3103536_3103878_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP018301.1_3103878_3104895_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP018301.1_3104907_3106056_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP018301.1_3106151_3107279_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP018301.1_3107275_3108184_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP018301.1_3108164_3108875_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP018301.1_3108884_3109259_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP018301.1_3109255_3111694_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|NZ_CP018301.1_3111690_3112635_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	10	3101976-3103488	7,4,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	20,20,19	20	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP018301.1_3092650_3092905_-,NA|135aa|up_8|NZ_CP018301.1_3093052_3093457_+,NA|64aa|up_7|NZ_CP018301.1_3093453_3093645_+,NA|86aa|up_5|NZ_CP018301.1_3095231_3095489_+,NA|104aa|up_4|NZ_CP018301.1_3095593_3095905_+,NA|203aa|up_3|NZ_CP018301.1_3096324_3096933_+,NA	NA|85aa|up_9|NZ_CP018301.1_3092650_3092905_-	NA	NA|135aa|up_8|NZ_CP018301.1_3093052_3093457_+	NA	NA|64aa|up_7|NZ_CP018301.1_3093453_3093645_+	NA	NA|385aa|up_6|NZ_CP018301.1_3093843_3094998_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP018301.1_3095231_3095489_+	NA	NA|104aa|up_4|NZ_CP018301.1_3095593_3095905_+	NA	NA|203aa|up_3|NZ_CP018301.1_3096324_3096933_+	NA	NA|470aa|up_2|NZ_CP018301.1_3097003_3098413_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP018301.1_3098409_3099222_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP018301.1_3100679_3101941_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP018301.1_3103536_3103878_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP018301.1_3103878_3104895_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP018301.1_3104907_3106056_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP018301.1_3106151_3107279_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP018301.1_3107275_3108184_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP018301.1_3108164_3108875_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP018301.1_3108884_3109259_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP018301.1_3109255_3111694_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP018301.1_3111690_3112635_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP018301.1_3112812_3113358_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	11	3713272-3715675	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGNNGCCGCCGNNGCCGCCGN	21	3	150	3713515-3713532|3713515-3713532|3713515-3713532|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3714872-3714889|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402|3715385-3715402	NZ_CP018301.1_1851713-1851730|NZ_CP018301.1_2347676-2347693|NZ_CP018301.1_3035327-3035310|NZ_CP018301.1_335253-335270|NZ_CP018301.1_362710-362693|NZ_CP018301.1_382196-382213|NZ_CP018301.1_625167-625150|NZ_CP018301.1_625545-625528|NZ_CP018301.1_625554-625537|NZ_CP018301.1_676361-676378|NZ_CP018301.1_841447-841430|NZ_CP018301.1_842107-842090|NZ_CP018301.1_1189613-1189630|NZ_CP018301.1_1210567-1210550|NZ_CP018301.1_1210918-1210901|NZ_CP018301.1_1215383-1215366|NZ_CP018301.1_1216169-1216152|NZ_CP018301.1_1383530-1383547|NZ_CP018301.1_1630268-1630285|NZ_CP018301.1_1653019-1653036|NZ_CP018301.1_1852118-1852135|NZ_CP018301.1_2413497-2413514|NZ_CP018301.1_2785942-2785959|NZ_CP018301.1_3034865-3034848|NZ_CP018301.1_3717227-3717244|NZ_CP018301.1_3717566-3717583|NZ_CP018301.1_3776323-3776306|NZ_CP018301.1_3777055-3777038|NZ_CP018301.1_3777112-3777095|NZ_CP018301.1_3911544-3911527|NZ_CP018301.1_333704-333721|NZ_CP018301.1_336606-336623|NZ_CP018301.1_674366-674383|NZ_CP018301.1_674375-674392|NZ_CP018301.1_674426-674443|NZ_CP018301.1_674435-674452|NZ_CP018301.1_674537-674554|NZ_CP018301.1_674546-674563|NZ_CP018301.1_675269-675286|NZ_CP018301.1_839708-839691|NZ_CP018301.1_841060-841043|NZ_CP018301.1_842347-842330|NZ_CP018301.1_968855-968872|NZ_CP018301.1_1188551-1188568|NZ_CP018301.1_1188605-1188622|NZ_CP018301.1_1383614-1383631|NZ_CP018301.1_1615286-1615303|NZ_CP018301.1_1627883-1627900|NZ_CP018301.1_1630070-1630087|NZ_CP018301.1_1652830-1652847|NZ_CP018301.1_1977644-1977661|NZ_CP018301.1_2047200-2047217|NZ_CP018301.1_2074458-2074475|NZ_CP018301.1_2074929-2074946|NZ_CP018301.1_2777469-2777486|NZ_CP018301.1_2904592-2904575|NZ_CP018301.1_2904658-2904641|NZ_CP018301.1_2941798-2941815|NZ_CP018301.1_3035582-3035565|NZ_CP018301.1_3715970-3715987|NZ_CP018301.1_3754434-3754417|NZ_CP018301.1_3755325-3755308|NZ_CP018301.1_3904216-3904199|NZ_CP018301.1_3904312-3904295|NZ_CP018301.1_3905308-3905291|NZ_CP018301.1_3905317-3905300|NZ_CP018301.1_3905326-3905309|NZ_CP018301.1_3905335-3905318|NZ_CP018301.1_3905344-3905327|NZ_CP018301.1_3906211-3906194|NZ_CP018301.1_3906301-3906284|NZ_CP018301.1_3906988-3906971|NZ_CP018301.1_334503-334520|NZ_CP018301.1_337896-337913|NZ_CP018301.1_362128-362111|NZ_CP018301.1_362566-362549|NZ_CP018301.1_362626-362609|NZ_CP018301.1_624708-624691|NZ_CP018301.1_674321-674338|NZ_CP018301.1_674636-674653|NZ_CP018301.1_839717-839700|NZ_CP018301.1_841150-841133|NZ_CP018301.1_928148-928165|NZ_CP018301.1_929018-929035|NZ_CP018301.1_929027-929044|NZ_CP018301.1_969341-969358|NZ_CP018301.1_1092238-1092221|NZ_CP018301.1_1092409-1092392|NZ_CP018301.1_1092418-1092401|NZ_CP018301.1_1188680-1188697|NZ_CP018301.1_1216418-1216401|NZ_CP018301.1_1216445-1216428|NZ_CP018301.1_1216568-1216551|NZ_CP018301.1_1261629-1261646|NZ_CP018301.1_1383545-1383562|NZ_CP018301.1_1383623-1383640|NZ_CP018301.1_1615658-1615675|NZ_CP018301.1_1615724-1615741|NZ_CP018301.1_1628111-1628128|NZ_CP018301.1_1628306-1628323|NZ_CP018301.1_1628492-1628509|NZ_CP018301.1_1628501-1628518|NZ_CP018301.1_1628957-1628974|NZ_CP018301.1_1628966-1628983|NZ_CP018301.1_1628984-1629001|NZ_CP018301.1_1629023-1629040|NZ_CP018301.1_1629188-1629205|NZ_CP018301.1_1629392-1629409|NZ_CP018301.1_1629623-1629640|NZ_CP018301.1_1629680-1629697|NZ_CP018301.1_1629689-1629706|NZ_CP018301.1_1629995-1630012|NZ_CP018301.1_1633393-1633410|NZ_CP018301.1_1652821-1652838|NZ_CP018301.1_1851368-1851385|NZ_CP018301.1_2031736-2031753|NZ_CP018301.1_2413164-2413181|NZ_CP018301.1_2677174-2677157|NZ_CP018301.1_2777085-2777102|NZ_CP018301.1_2777994-2778011|NZ_CP018301.1_2778300-2778317|NZ_CP018301.1_2904556-2904539|NZ_CP018301.1_2925773-2925790|NZ_CP018301.1_3035495-3035478|NZ_CP018301.1_3035546-3035529|NZ_CP018301.1_3713089-3713106|NZ_CP018301.1_3754806-3754789|NZ_CP018301.1_3755223-3755206|NZ_CP018301.1_3755334-3755317|NZ_CP018301.1_3776167-3776150|NZ_CP018301.1_3776428-3776411|NZ_CP018301.1_3776437-3776420|NZ_CP018301.1_3777415-3777398|NZ_CP018301.1_3777469-3777452|NZ_CP018301.1_3904123-3904106|NZ_CP018301.1_3904207-3904190|NZ_CP018301.1_3904303-3904286|NZ_CP018301.1_3905146-3905129|NZ_CP018301.1_3905299-3905282|NZ_CP018301.1_3906283-3906266|NZ_CP018301.1_3907117-3907100|NZ_CP018301.1_3907339-3907322|NZ_CP018301.1_3907393-3907376|NZ_CP018301.1_3907501-3907484|NZ_CP018301.1_3907696-3907679|NZ_CP018301.1_3910638-3910621|NZ_CP018301.1_3910944-3910927|NZ_CP018301.1_3911565-3911548|NZ_CP018301.1_3912363-3912346|NZ_CP018301.1_3912372-3912355	NA	41	41	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP018301.1_3730719_3731007_-,NA|87aa|down_9|NZ_CP018301.1_3744127_3744388_-	NA|282aa|up_9|NZ_CP018301.1_3700611_3701457_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP018301.1_3701931_3702372_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP018301.1_3702405_3703275_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP018301.1_3703295_3704306_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP018301.1_3704590_3705223_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP018301.1_3705289_3706519_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP018301.1_3706801_3708151_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP018301.1_3708162_3709302_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP018301.1_3709298_3710030_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|763aa|up_0|NZ_CP018301.1_3710038_3712327_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP018301.1_3718589_3718847_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP018301.1_3719102_3728576_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP018301.1_3729201_3729648_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP018301.1_3729684_3730503_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP018301.1_3730719_3731007_-	NA	NA|3717aa|down_5|NZ_CP018301.1_3731343_3742494_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP018301.1_3742737_3743532_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP018301.1_3743613_3743985_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_8|NZ_CP018301.1_3743882_3744293_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP018301.1_3744127_3744388_-	NA
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	12	3716095-3716636	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP018301.1_3730719_3731007_-,NA|87aa|down_9|NZ_CP018301.1_3744127_3744388_-	NA|282aa|up_9|NZ_CP018301.1_3700611_3701457_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP018301.1_3701931_3702372_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP018301.1_3702405_3703275_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP018301.1_3703295_3704306_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP018301.1_3704590_3705223_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP018301.1_3705289_3706519_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP018301.1_3706801_3708151_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP018301.1_3708162_3709302_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP018301.1_3709298_3710030_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|763aa|up_0|NZ_CP018301.1_3710038_3712327_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP018301.1_3718589_3718847_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP018301.1_3719102_3728576_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP018301.1_3729201_3729648_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP018301.1_3729684_3730503_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP018301.1_3730719_3731007_-	NA	NA|3717aa|down_5|NZ_CP018301.1_3731343_3742494_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP018301.1_3742737_3743532_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP018301.1_3743613_3743985_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_8|NZ_CP018301.1_3743882_3744293_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP018301.1_3744127_3744388_-	NA
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	13	4075164-4075252	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP018301.1_4065750_4066521_-,NA|119aa|up_3|NZ_CP018301.1_4071655_4072012_+,NA|52aa|up_2|NZ_CP018301.1_4072111_4072267_+,NA|233aa|up_0|NZ_CP018301.1_4074268_4074967_-,NA|126aa|down_6|NZ_CP018301.1_4080487_4080865_+	NA|288aa|up_9|NZ_CP018301.1_4064132_4064996_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP018301.1_4065750_4066521_-	NA	NA|549aa|up_7|NZ_CP018301.1_4066517_4068164_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP018301.1_4068160_4069024_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP018301.1_4069016_4069943_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP018301.1_4069944_4071570_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP018301.1_4071655_4072012_+	NA	NA|52aa|up_2|NZ_CP018301.1_4072111_4072267_+	NA	NA|652aa|up_1|NZ_CP018301.1_4072277_4074233_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP018301.1_4074268_4074967_-	NA	NA|173aa|down_0|NZ_CP018301.1_4075312_4075831_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP018301.1_4075831_4076815_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP018301.1_4076807_4078001_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP018301.1_4078006_4078828_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP018301.1_4078959_4079643_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP018301.1_4079642_4080380_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP018301.1_4080487_4080865_+	NA	NA|225aa|down_7|NZ_CP018301.1_4080963_4081638_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP018301.1_4081741_4082536_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP018301.1_4082542_4082998_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_001895825.1_ASM189582v1	NZ_CP018301	Mycobacterium tuberculosis strain I0002801-4, complete genome	14	4313296-4313374	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	AAGCGCAGCGATGAGGAGGAGCGGCGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|109aa|up_9|NZ_CP018301.1_4302497_4302824_+,NA|117aa|up_8|NZ_CP018301.1_4302722_4303073_-,NA|184aa|up_3|NZ_CP018301.1_4307320_4307872_+,NA|281aa|down_7|NZ_CP018301.1_4321242_4322085_+	NA|109aa|up_9|NZ_CP018301.1_4302497_4302824_+	NA	NA|117aa|up_8|NZ_CP018301.1_4302722_4303073_-	NA	NA|393aa|up_7|NZ_CP018301.1_4303399_4304578_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|403aa|up_6|NZ_CP018301.1_4304820_4306029_+	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional	NA|104aa|up_5|NZ_CP018301.1_4306116_4306428_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|284aa|up_4|NZ_CP018301.1_4306430_4307282_+	pfam14011, ESX-1_EspG, EspG family	NA|184aa|up_3|NZ_CP018301.1_4307320_4307872_+	NA	NA|574aa|up_2|NZ_CP018301.1_4307864_4309586_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|481aa|up_1|NZ_CP018301.1_4309589_4311032_+	TIGR03919, putative_membrane_protein, type VII secretion protein EccB, Actinobacterial	NA|748aa|up_0|NZ_CP018301.1_4311031_4313275_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|592aa|down_0|NZ_CP018301.1_4313376_4315152_+	TIGR03925, T7SS_EccC_b, type VII secretion protein EccCb	NA|99aa|down_1|NZ_CP018301.1_4315294_4315591_+	pfam00934, PE, PE family	NA|369aa|down_2|NZ_CP018301.1_4315624_4316731_+	pfam00823, PPE, PPE family	NA|101aa|down_3|NZ_CP018301.1_4316823_4317126_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|96aa|down_4|NZ_CP018301.1_4317158_4317446_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|667aa|down_5|NZ_CP018301.1_4317559_4319560_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|512aa|down_6|NZ_CP018301.1_4319556_4321092_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|281aa|down_7|NZ_CP018301.1_4321242_4322085_+	NA	NA|724aa|down_8|NZ_CP018301.1_4322142_4324314_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|116aa|down_9|NZ_CP018301.1_4324730_4325078_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family
