assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900295.1_ASM190029v1	NZ_CP010116	Escherichia coli strain C1 chromosome, complete genome	1	1975254-1975395	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|36aa|up_4|NZ_CP010116.1_1971476_1971584_-,NA	NA|354aa|up_9|NZ_CP010116.1_1964717_1965779_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP010116.1_1965775_1966507_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_CP010116.1_1966521_1968981_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP010116.1_1969031_1969598_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP010116.1_1969987_1971271_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP010116.1_1971476_1971584_-	NA	NA|135aa|up_3|NZ_CP010116.1_1971964_1972369_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP010116.1_1972362_1972710_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP010116.1_1972709_1974476_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP010116.1_1974491_1975208_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP010116.1_1975557_1978359_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP010116.1_1978373_1979591_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP010116.1_1979684_1980851_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP010116.1_1980850_1981720_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|302aa|down_4|NZ_CP010116.1_1982385_1983291_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_5|NZ_CP010116.1_1983324_1983927_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_6|NZ_CP010116.1_1983936_1985589_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_7|NZ_CP010116.1_1985696_1986977_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_8|NZ_CP010116.1_1987137_1987455_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|457aa|down_9|NZ_CP010116.1_1987451_1988822_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA
GCF_001900295.1_ASM190029v1	NZ_CP010116	Escherichia coli strain C1 chromosome, complete genome	2	3805390-3805474	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGGACAACTGTTGGACAACCGTTGGACAAT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|95aa|up_1|NZ_CP010116.1_3802778_3803063_-,NA|54aa|down_0|NZ_CP010116.1_3805856_3806018_-,NA|135aa|down_4|NZ_CP010116.1_3807398_3807803_+,NA|63aa|down_8|NZ_CP010116.1_3811268_3811457_+,NA|57aa|down_9|NZ_CP010116.1_3811696_3811867_+	NA|173aa|up_9|NZ_CP010116.1_3799492_3800011_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|224aa|up_8|NZ_CP010116.1_3800001_3800673_-	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain	NA|69aa|up_7|NZ_CP010116.1_3800650_3800857_-	pfam06322, Phage_NinH, Phage NinH protein	NA|204aa|up_6|NZ_CP010116.1_3800853_3801465_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|59aa|up_5|NZ_CP010116.1_3801457_3801634_-	pfam05810, NinF, NinF protein	NA|120aa|up_4|NZ_CP010116.1_3801633_3801993_-	PHA01519, PHA01519, hypothetical protein	NA|59aa|up_3|NZ_CP010116.1_3801995_3802172_-	pfam05322, NinE, NINE Protein	NA|137aa|up_2|NZ_CP010116.1_3802168_3802579_-	pfam05772, NinB, NinB protein	NA|95aa|up_1|NZ_CP010116.1_3802778_3803063_-	NA	NA|479aa|up_0|NZ_CP010116.1_3803553_3804990_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|54aa|down_0|NZ_CP010116.1_3805856_3806018_-	NA	NA|93aa|down_1|NZ_CP010116.1_3806052_3806331_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NZ_CP010116.1_3806450_3806666_-	pfam01381, HTH_3, Helix-turn-helix	NA|211aa|down_3|NZ_CP010116.1_3806769_3807402_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|135aa|down_4|NZ_CP010116.1_3807398_3807803_+	NA	NA|249aa|down_5|NZ_CP010116.1_3808457_3809204_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|514aa|down_6|NZ_CP010116.1_3809218_3810760_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|110aa|down_7|NZ_CP010116.1_3810930_3811260_+	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|63aa|down_8|NZ_CP010116.1_3811268_3811457_+	NA	NA|57aa|down_9|NZ_CP010116.1_3811696_3811867_+	NA
GCF_001900295.1_ASM190029v1	NZ_CP010116	Escherichia coli strain C1 chromosome, complete genome	3	4240889-4241588	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP010116.1_4232701_4233463_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010116.1_4233443_4234493_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010116.1_4234489_4234969_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010116.1_4234968_4235679_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010116.1_4235697_4236009_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010116.1_4236202_4236526_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010116.1_4236575_4237181_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010116.1_4237180_4238608_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010116.1_4238609_4239518_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010116.1_4239769_4240807_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010116.1_4241684_4241978_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP010116.1_4241974_4242898_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010116.1_4242894_4243545_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010116.1_4243526_4244273_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010116.1_4244283_4245339_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010116.1_4245353_4245890_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP010116.1_4245886_4247449_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010116.1_4247546_4250246_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|371aa|down_8|NZ_CP010116.1_4250484_4251597_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_9|NZ_CP010116.1_4251789_4251942_-	pfam01848, HOK_GEF, Hok/gef family
GCF_001900295.1_ASM190029v1	NZ_CP010116	Escherichia coli strain C1 chromosome, complete genome	4	4270075-4271079	4,2,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACT	29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	16,16,13,13	16	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,cas14j,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|87aa|up_9|NZ_CP010116.1_4258546_4258807_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP010116.1_4258823_4259399_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP010116.1_4259533_4260882_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP010116.1_4260981_4261842_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010116.1_4261838_4262618_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010116.1_4262595_4264005_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010116.1_4264026_4265481_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010116.1_4265550_4266336_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010116.1_4266654_4267932_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010116.1_4267958_4269437_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010116.1_4271417_4272089_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP010116.1_4272382_4273255_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP010116.1_4273314_4274613_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP010116.1_4274700_4276338_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP010116.1_4276565_4277357_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP010116.1_4277428_4277764_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP010116.1_4277763_4278012_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP010116.1_4278089_4280324_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP010116.1_4280371_4281673_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP010116.1_4281729_4284486_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
