assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900595.1_ASM190059v1	NZ_CP010134	Escherichia coli strain D1 chromosome, complete genome	1	599796-599887	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|70aa|up_9|NZ_CP010134.1_589046_589256_-,NA	NA|70aa|up_9|NZ_CP010134.1_589046_589256_-	NA	NA|1321aa|up_8|NZ_CP010134.1_589310_593273_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010134.1_593312_593951_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010134.1_594238_595330_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010134.1_595329_596022_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010134.1_596033_596420_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010134.1_596427_597228_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010134.1_597237_597828_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010134.1_597838_598333_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010134.1_598353_599682_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010134.1_600310_600907_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010134.1_600927_601155_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010134.1_601192_602434_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP010134.1_602722_603982_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010134.1_604241_605162_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010134.1_605161_605467_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010134.1_605559_606159_-	PRK04976, torD, chaperone protein TorD; Validated	NA|848aa|down_7|NZ_CP010134.1_606155_608699_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010134.1_608698_609871_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010134.1_610000_610693_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900595.1_ASM190059v1	NZ_CP010134	Escherichia coli strain D1 chromosome, complete genome	2	761258-761349	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|553aa|up_9|NZ_CP010134.1_749284_750943_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|up_8|NZ_CP010134.1_751368_752064_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|213aa|up_7|NZ_CP010134.1_754774_755413_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010134.1_755700_756792_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010134.1_756791_757484_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010134.1_757495_757882_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010134.1_757889_758690_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010134.1_758699_759290_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010134.1_759300_759795_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010134.1_759815_761144_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010134.1_761772_762369_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010134.1_762389_762617_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010134.1_762654_763896_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP010134.1_764184_765444_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010134.1_765703_766624_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010134.1_766623_766929_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010134.1_767021_767621_-	PRK04976, torD, chaperone protein TorD; Validated	NA|848aa|down_7|NZ_CP010134.1_767617_770161_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010134.1_770160_771333_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010134.1_771462_772155_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900595.1_ASM190059v1	NZ_CP010134	Escherichia coli strain D1 chromosome, complete genome	3	1025342-1025486	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|330aa|up_9|NZ_CP010134.1_1013240_1014230_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP010134.1_1014626_1015535_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP010134.1_1015726_1017748_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010134.1_1018326_1019004_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010134.1_1018996_1019752_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010134.1_1019738_1020893_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010134.1_1020889_1021930_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010134.1_1022016_1023306_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010134.1_1023364_1023841_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010134.1_1023992_1025276_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010134.1_1025509_1027771_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010134.1_1027953_1029387_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010134.1_1029462_1030515_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010134.1_1030698_1031652_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010134.1_1031692_1032688_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010134.1_1032842_1033661_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010134.1_1033661_1034720_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010134.1_1034722_1035412_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010134.1_1035411_1036185_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010134.1_1036351_1036501_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001900595.1_ASM190059v1	NZ_CP010134	Escherichia coli strain D1 chromosome, complete genome	4	3255280-3255397	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|55aa|down_0|NZ_CP010134.1_3255470_3255635_-	NA|115aa|up_9|NZ_CP010134.1_3243001_3243346_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP010134.1_3243534_3244473_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP010134.1_3244571_3245561_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP010134.1_3245582_3246914_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP010134.1_3246939_3248148_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP010134.1_3248181_3250476_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP010134.1_3250489_3250879_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP010134.1_3250950_3252315_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP010134.1_3252589_3253921_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP010134.1_3253948_3255259_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP010134.1_3255470_3255635_-	NA	NA|234aa|down_1|NZ_CP010134.1_3255657_3256359_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP010134.1_3256463_3257360_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP010134.1_3257410_3257767_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP010134.1_3258008_3258374_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP010134.1_3258666_3259653_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_6|NZ_CP010134.1_3259722_3260115_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP010134.1_3260300_3260600_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP010134.1_3260589_3260994_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP010134.1_3260996_3261302_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_001900595.1_ASM190059v1	NZ_CP010134	Escherichia coli strain D1 chromosome, complete genome	5	4124404-4126081	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	27,27,27	27	TypeI-E	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP010134.1_4116216_4116978_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010134.1_4116958_4118008_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010134.1_4118004_4118484_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010134.1_4118483_4119194_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010134.1_4119212_4119524_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010134.1_4119717_4120041_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010134.1_4120090_4120696_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010134.1_4120695_4122123_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010134.1_4122124_4123033_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010134.1_4123284_4124322_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010134.1_4126177_4126471_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010134.1_4126470_4127391_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010134.1_4127387_4128038_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010134.1_4128019_4128766_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010134.1_4128776_4129832_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP010134.1_4129843_4130383_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP010134.1_4130379_4131942_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010134.1_4132039_4134739_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010134.1_4134932_4135085_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010134.1_4135349_4136084_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001900595.1_ASM190059v1	NZ_CP010134	Escherichia coli strain D1 chromosome, complete genome	6	4141583-4142892	6,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,9	21	TypeI-E	c2c9_V-U4,cas3,DinG,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|121aa|down_3|NZ_CP010134.1_4145632_4145995_+	cas7|352aa|up_9|NZ_CP010134.1_4128776_4129832_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|up_8|NZ_CP010134.1_4129843_4130383_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_7|NZ_CP010134.1_4130379_4131942_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP010134.1_4132039_4134739_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP010134.1_4134932_4135085_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP010134.1_4135349_4136084_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP010134.1_4136157_4137870_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP010134.1_4137869_4139669_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP010134.1_4139987_4140350_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|NZ_CP010134.1_4140389_4140944_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010134.1_4143231_4143903_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP010134.1_4144075_4144678_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP010134.1_4144691_4145597_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP010134.1_4145632_4145995_+	NA	NA|433aa|down_4|NZ_CP010134.1_4146050_4147349_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP010134.1_4147436_4149074_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP010134.1_4149301_4150093_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP010134.1_4150163_4150499_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP010134.1_4150498_4150747_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP010134.1_4150824_4153059_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
