assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	1	1282799-1283743	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	15,15,12	15	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_CP010137.1_1281508_1281649_-,NA	NA|434aa|up_9|NZ_CP010137.1_1272205_1273507_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP010137.1_1273554_1275789_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP010137.1_1275866_1276115_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP010137.1_1276114_1276450_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP010137.1_1276520_1277312_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP010137.1_1277539_1279177_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP010137.1_1279264_1280563_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP010137.1_1280622_1281495_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP010137.1_1281508_1281649_-	NA	NA|224aa|up_0|NZ_CP010137.1_1281787_1282459_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP010137.1_1284381_1285860_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP010137.1_1285886_1287164_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP010137.1_1287481_1288267_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP010137.1_1288336_1289791_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP010137.1_1289812_1291222_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP010137.1_1291199_1291979_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP010137.1_1291942_1292836_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP010137.1_1292983_1293559_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP010137.1_1293575_1293836_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP010137.1_1293826_1295098_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	2	1301976-1302370	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,6	6	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|298aa|up_9|NZ_CP010137.1_1291942_1292836_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP010137.1_1292983_1293559_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP010137.1_1293575_1293836_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP010137.1_1293826_1295098_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|NZ_CP010137.1_1295175_1295541_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP010137.1_1295856_1297656_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP010137.1_1297655_1299368_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP010137.1_1299441_1300176_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP010137.1_1300440_1300593_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP010137.1_1300785_1301898_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP010137.1_1302390_1303428_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010137.1_1303679_1304588_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010137.1_1304589_1306017_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010137.1_1306016_1306622_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010137.1_1306671_1306995_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010137.1_1307188_1307500_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010137.1_1307518_1308229_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010137.1_1308228_1308708_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010137.1_1308704_1309754_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010137.1_1309734_1310496_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	3	1793710-1793825	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GAGCCGTAGGCCGGATAAGGCGTTCACGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|268aa|up_9|NZ_CP010137.1_1782336_1783140_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP010137.1_1783180_1784083_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP010137.1_1784275_1785466_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP010137.1_1785462_1786722_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP010137.1_1786711_1788340_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP010137.1_1788612_1789971_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP010137.1_1789975_1791052_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP010137.1_1791514_1792165_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP010137.1_1792218_1792473_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP010137.1_1792472_1793603_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP010137.1_1793844_1796130_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP010137.1_1796825_1800578_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP010137.1_1800705_1801428_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP010137.1_1801574_1804202_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP010137.1_1804350_1806039_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP010137.1_1806035_1806659_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP010137.1_1806802_1811197_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP010137.1_1811197_1812847_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP010137.1_1812851_1813628_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP010137.1_1813701_1814886_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	4	2015246-2015386	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	ACCTACGGTTCGGATTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGC	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|163aa|up_9|NZ_CP010137.1_2005724_2006213_+	PRK10191, PRK10191, putative acyl transferase; Provisional	NA|406aa|up_8|NZ_CP010137.1_2006209_2007427_+	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|406aa|up_7|NZ_CP010137.1_2007401_2008619_+	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|249aa|up_6|NZ_CP010137.1_2008629_2009376_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_5|NZ_CP010137.1_2009391_2009940_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_4|NZ_CP010137.1_2009965_2011087_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_3|NZ_CP010137.1_2011089_2012055_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_2|NZ_CP010137.1_2012057_2012537_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_1|NZ_CP010137.1_2012533_2013757_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_0|NZ_CP010137.1_2013759_2015196_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|down_0|NZ_CP010137.1_2015476_2016847_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|down_1|NZ_CP010137.1_2016901_2018296_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|down_2|NZ_CP010137.1_2018297_2019776_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_3|NZ_CP010137.1_2020147_2021428_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_4|NZ_CP010137.1_2021424_2022645_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_5|NZ_CP010137.1_2022655_2024050_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_6|NZ_CP010137.1_2024224_2025118_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|362aa|down_7|NZ_CP010137.1_2025489_2026575_+	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|300aa|down_8|NZ_CP010137.1_2026574_2027474_+	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|293aa|down_9|NZ_CP010137.1_2027531_2028410_+	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	5	2386066-2386189	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP010137.1_2395085_2395175_+	NA|471aa|up_9|NZ_CP010137.1_2375520_2376933_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010137.1_2377489_2377699_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010137.1_2378153_2378780_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010137.1_2378800_2380903_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010137.1_2380915_2381554_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010137.1_2381617_2382286_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010137.1_2382282_2383068_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010137.1_2383071_2383884_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010137.1_2383895_2385500_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010137.1_2385625_2385931_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010137.1_2386503_2387760_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010137.1_2387800_2389174_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010137.1_2389388_2390030_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010137.1_2390069_2391218_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010137.1_2391508_2392720_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010137.1_2392832_2393765_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010137.1_2393761_2394787_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010137.1_2395085_2395175_+	NA	NA|390aa|down_8|NZ_CP010137.1_2395340_2396510_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010137.1_2396744_2397326_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	6	3034519-3034610	6	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP010137.1_3023594_3023804_-,NA	NA|70aa|up_9|NZ_CP010137.1_3023594_3023804_-	NA	NA|1321aa|up_8|NZ_CP010137.1_3023858_3027821_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010137.1_3027860_3028499_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010137.1_3028786_3029878_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010137.1_3029877_3030570_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010137.1_3030581_3030968_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010137.1_3030975_3031776_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010137.1_3031785_3032376_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010137.1_3032386_3032881_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010137.1_3032901_3034230_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010137.1_3035033_3035630_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010137.1_3035650_3035878_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010137.1_3035915_3037157_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP010137.1_3037439_3038699_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010137.1_3038959_3039880_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010137.1_3039879_3040185_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010137.1_3040336_3040936_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP010137.1_3040932_3043479_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010137.1_3043478_3044651_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010137.1_3044780_3045473_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	7	3552669-3552765	7	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|231aa|up_9|NZ_CP010137.1_3544464_3545157_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP010137.1_3545376_3545919_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP010137.1_3546389_3547256_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP010137.1_3547257_3547470_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP010137.1_3547577_3548099_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP010137.1_3548134_3549520_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP010137.1_3549693_3550188_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP010137.1_3550190_3550913_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP010137.1_3551030_3551540_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP010137.1_3551536_3552604_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP010137.1_3552798_3553692_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP010137.1_3553688_3554504_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP010137.1_3554514_3555774_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP010137.1_3555783_3557451_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP010137.1_3557767_3558817_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP010137.1_3558838_3560074_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP010137.1_3560084_3560870_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP010137.1_3561097_3562243_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP010137.1_3562264_3563566_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP010137.1_3563622_3564984_-	PRK08044, PRK08044, allantoinase AllB
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	8	3696555-3696699	8	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NZ_CP010137.1_3698744_3698828_-	NA|357aa|up_9|NZ_CP010137.1_3681693_3682764_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP010137.1_3682856_3683438_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP010137.1_3683442_3685260_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP010137.1_3685415_3686789_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP010137.1_3686864_3688184_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP010137.1_3688590_3689886_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP010137.1_3689943_3690633_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP010137.1_3690822_3692025_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP010137.1_3692021_3695168_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP010137.1_3695293_3696478_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP010137.1_3696722_3697631_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP010137.1_3697755_3698667_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP010137.1_3698744_3698828_-	NA	NA|95aa|down_3|NZ_CP010137.1_3699313_3699598_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP010137.1_3699669_3700347_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP010137.1_3700604_3700796_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP010137.1_3700845_3701370_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP010137.1_3701552_3702011_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP010137.1_3702130_3702940_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP010137.1_3702956_3704072_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	9	3876742-3876838	9	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|153aa|up_9|NZ_CP010137.1_3868620_3869079_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_CP010137.1_3869339_3870797_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|179aa|up_7|NZ_CP010137.1_3870853_3871390_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_CP010137.1_3871322_3871589_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP010137.1_3871822_3872275_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP010137.1_3872284_3872683_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP010137.1_3872685_3872979_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP010137.1_3873030_3874086_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP010137.1_3874156_3874942_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP010137.1_3874886_3876626_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP010137.1_3876841_3877339_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP010137.1_3877514_3878288_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP010137.1_3878473_3878734_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP010137.1_3878736_3879015_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP010137.1_3879170_3879911_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP010137.1_3879881_3880649_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP010137.1_3880854_3881433_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP010137.1_3881672_3884117_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP010137.1_3884159_3884633_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP010137.1_3884786_3885557_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	10	4090141-4090273	3	PILER-CR	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|126aa|up_9|NZ_CP010137.1_4080846_4081224_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP010137.1_4081230_4082073_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP010137.1_4082150_4082630_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP010137.1_4082821_4084684_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP010137.1_4084676_4085207_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP010137.1_4085314_4086646_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP010137.1_4086702_4086990_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP010137.1_4086986_4088273_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP010137.1_4088323_4089265_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP010137.1_4089279_4090050_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP010137.1_4090523_4092038_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP010137.1_4092068_4093211_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP010137.1_4093339_4094557_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP010137.1_4094630_4096184_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP010137.1_4096292_4097078_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP010137.1_4097083_4097674_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP010137.1_4097882_4098278_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP010137.1_4098539_4101761_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP010137.1_4101778_4102927_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP010137.1_4103382_4104204_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_001900615.1_ASM190061v1	NZ_CP010137	Escherichia coli strain D2 chromosome, complete genome	11	4097712-4097853	10	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|96aa|up_9|NZ_CP010137.1_4086702_4086990_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP010137.1_4086986_4088273_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP010137.1_4088323_4089265_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP010137.1_4089279_4090050_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP010137.1_4090523_4092038_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP010137.1_4092068_4093211_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP010137.1_4093339_4094557_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP010137.1_4094630_4096184_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP010137.1_4096292_4097078_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP010137.1_4097083_4097674_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP010137.1_4097882_4098278_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP010137.1_4098539_4101761_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP010137.1_4101778_4102927_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP010137.1_4103382_4104204_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP010137.1_4104370_4105285_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP010137.1_4105350_4106301_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP010137.1_4106302_4106752_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP010137.1_4106876_4107371_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP010137.1_4107370_4110187_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP010137.1_4110229_4111171_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
