assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	1	286277-286424	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|500aa|up_6|NZ_CP010140.1_277677_279177_+,NA	NA|238aa|up_9|NZ_CP010140.1_275484_276198_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP010140.1_276268_276862_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP010140.1_277006_277459_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|500aa|up_6|NZ_CP010140.1_277677_279177_+	NA	NA|335aa|up_5|NZ_CP010140.1_279232_280237_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP010140.1_280398_280815_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP010140.1_280860_281364_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP010140.1_281556_282753_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP010140.1_282808_285664_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP010140.1_285663_286107_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP010140.1_286460_287972_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP010140.1_288238_289339_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP010140.1_289338_290421_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP010140.1_290539_292042_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP010140.1_292119_293118_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP010140.1_293184_294504_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP010140.1_294565_295330_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP010140.1_295353_296385_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP010140.1_296601_297165_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP010140.1_297168_298188_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	2	584942-585057	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|126aa|up_9|NZ_CP010140.1_570946_571324_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP010140.1_571326_572148_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP010140.1_572144_573134_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP010140.1_573133_574420_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP010140.1_574472_576827_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP010140.1_577081_577897_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP010140.1_578013_578673_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP010140.1_578684_581591_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP010140.1_581755_584107_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP010140.1_584181_584877_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP010140.1_585076_586579_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP010140.1_586589_588290_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP010140.1_588628_589507_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP010140.1_589592_590357_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP010140.1_590470_591169_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP010140.1_591152_592763_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP010140.1_592738_593722_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP010140.1_593885_595541_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP010140.1_595629_595761_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP010140.1_595862_597041_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	3	794784-794937	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|150aa|up_8|NZ_CP010140.1_784756_785206_+,NA	NA|1418aa|up_9|NZ_CP010140.1_780491_784745_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|150aa|up_8|NZ_CP010140.1_784756_785206_+	NA	NA|257aa|up_7|NZ_CP010140.1_786644_787415_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_6|NZ_CP010140.1_787568_788042_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_5|NZ_CP010140.1_788084_790529_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_4|NZ_CP010140.1_790768_791347_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|NZ_CP010140.1_791552_792320_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|NZ_CP010140.1_792290_793031_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_1|NZ_CP010140.1_793322_794081_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|NZ_CP010140.1_794256_794754_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_0|NZ_CP010140.1_795071_796811_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|262aa|down_1|NZ_CP010140.1_796755_797541_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|352aa|down_2|NZ_CP010140.1_797611_798667_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_3|NZ_CP010140.1_798663_799116_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|89aa|down_4|NZ_CP010140.1_799422_799689_+	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|486aa|down_5|NZ_CP010140.1_800045_801503_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_6|NZ_CP010140.1_801763_802222_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_7|NZ_CP010140.1_802313_803558_+	PRK05077, frsA, esterase FrsA	NA|134aa|down_8|NZ_CP010140.1_803615_804017_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|352aa|down_9|NZ_CP010140.1_804055_805111_-	PRK10159, PRK10159, phosphoporin PhoE
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	4	2798053-2798187	4	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|339aa|up_9|NZ_CP010140.1_2784502_2785519_-	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|340aa|up_8|NZ_CP010140.1_2785537_2786557_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|298aa|up_7|NZ_CP010140.1_2786865_2787759_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_6|NZ_CP010140.1_2787990_2788986_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_5|NZ_CP010140.1_2789143_2790538_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_4|NZ_CP010140.1_2790548_2791769_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_3|NZ_CP010140.1_2791765_2793046_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|up_2|NZ_CP010140.1_2793609_2795088_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|up_1|NZ_CP010140.1_2795089_2796484_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|up_0|NZ_CP010140.1_2796538_2797909_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_0|NZ_CP010140.1_2798188_2799625_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_1|NZ_CP010140.1_2799627_2800851_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_2|NZ_CP010140.1_2800847_2801327_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_3|NZ_CP010140.1_2801329_2802295_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_4|NZ_CP010140.1_2802297_2803419_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_5|NZ_CP010140.1_2803444_2803993_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_6|NZ_CP010140.1_2804008_2804755_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|406aa|down_7|NZ_CP010140.1_2804765_2805983_-	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|406aa|down_8|NZ_CP010140.1_2805957_2807175_-	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|163aa|down_9|NZ_CP010140.1_2807171_2807660_-	PRK10191, PRK10191, putative acyl transferase; Provisional
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	5	3579900-3580721	1,1,5	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,12,12	13	TypeI-E	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP010140.1_3571773_3572535_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010140.1_3572515_3573565_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010140.1_3573561_3574041_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010140.1_3574040_3574751_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010140.1_3574769_3575081_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010140.1_3575274_3575598_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010140.1_3575647_3576253_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010140.1_3576252_3577680_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010140.1_3577681_3578590_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010140.1_3578841_3579879_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010140.1_3580817_3581111_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP010140.1_3581107_3582031_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010140.1_3582027_3582678_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010140.1_3582659_3583406_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010140.1_3583416_3584472_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010140.1_3584483_3585020_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010140.1_3585016_3586579_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010140.1_3586676_3589376_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010140.1_3589569_3589722_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010140.1_3589986_3590721_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	6	3606420-3606936	6,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Unclear	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP010140.1_3608085_3608226_+	NA|424aa|up_9|NZ_CP010140.1_3595064_3596336_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP010140.1_3596326_3596587_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP010140.1_3596603_3597179_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP010140.1_3597326_3598187_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010140.1_3598183_3598963_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010140.1_3598940_3600350_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010140.1_3600371_3601826_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010140.1_3601895_3602681_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010140.1_3602999_3604277_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010140.1_3604303_3605782_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010140.1_3607275_3607947_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010140.1_3608085_3608226_+	NA	NA|291aa|down_2|NZ_CP010140.1_3608239_3609112_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010140.1_3609171_3610470_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010140.1_3610557_3612195_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010140.1_3612422_3613214_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010140.1_3613284_3613620_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010140.1_3613619_3613868_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010140.1_3613945_3616180_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010140.1_3616227_3617529_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_001900635.1_ASM190063v1	NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	7	4056298-4056437	7	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|252aa|up_9|NZ_CP010140.1_4045568_4046324_+	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|195aa|up_8|NZ_CP010140.1_4046724_4047309_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|232aa|up_7|NZ_CP010140.1_4047388_4048084_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|839aa|up_6|NZ_CP010140.1_4048113_4050630_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|364aa|up_5|NZ_CP010140.1_4050640_4051732_+	pfam00419, Fimbrial, Fimbrial protein	NA|287aa|up_4|NZ_CP010140.1_4051774_4052635_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|679aa|up_3|NZ_CP010140.1_4052699_4054736_+	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|132aa|up_2|NZ_CP010140.1_4054693_4055089_+	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|197aa|up_1|NZ_CP010140.1_4055108_4055699_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|192aa|up_0|NZ_CP010140.1_4055708_4056284_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|347aa|down_0|NZ_CP010140.1_4056488_4057529_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|212aa|down_1|NZ_CP010140.1_4057601_4058237_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|173aa|down_2|NZ_CP010140.1_4058364_4058883_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|148aa|down_3|NZ_CP010140.1_4058862_4059306_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|101aa|down_4|NZ_CP010140.1_4059356_4059659_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|down_5|NZ_CP010140.1_4059645_4060149_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|175aa|down_6|NZ_CP010140.1_4060142_4060667_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_7|NZ_CP010140.1_4060875_4061871_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|293aa|down_8|NZ_CP010140.1_4061879_4062758_+	PRK15447, PRK15447, putative protease; Provisional	NA|336aa|down_9|NZ_CP010140.1_4062963_4063971_+	PRK10508, PRK10508, luciferase-like monooxygenase
