assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900815.1_ASM190081v1	NZ_CP010167	Escherichia coli strain H3 chromosome, complete genome	1	1769690-1769786	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP010167.1_1757559_1758921_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP010167.1_1758977_1760279_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP010167.1_1760300_1761446_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP010167.1_1761574_1762360_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP010167.1_1762370_1763606_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP010167.1_1763627_1764677_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP010167.1_1764993_1766661_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP010167.1_1766670_1767930_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP010167.1_1767940_1768756_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP010167.1_1768752_1769646_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010167.1_1769850_1770918_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010167.1_1770914_1771424_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010167.1_1771541_1772264_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010167.1_1772266_1772761_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010167.1_1772934_1774320_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010167.1_1774355_1774877_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010167.1_1774984_1775197_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010167.1_1775198_1776065_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP010167.1_1776545_1777088_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP010167.1_1777307_1778000_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001900815.1_ASM190081v1	NZ_CP010167	Escherichia coli strain H3 chromosome, complete genome	2	2284927-2285018	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|70aa|down_9|NZ_CP010167.1_2295557_2295767_+	NA|231aa|up_9|NZ_CP010167.1_2274117_2274810_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP010167.1_2274939_2276112_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP010167.1_2276111_2278658_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP010167.1_2278654_2279254_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP010167.1_2279346_2279652_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP010167.1_2279651_2280572_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP010167.1_2280831_2282091_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP010167.1_2282379_2283621_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP010167.1_2283658_2283886_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP010167.1_2283906_2284503_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP010167.1_2285131_2286460_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP010167.1_2286480_2286975_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP010167.1_2286985_2287576_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP010167.1_2287585_2288386_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP010167.1_2288393_2288780_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP010167.1_2288791_2289484_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP010167.1_2289483_2290575_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP010167.1_2290862_2291501_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP010167.1_2291540_2295503_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP010167.1_2295557_2295767_+	NA
GCF_001900815.1_ASM190081v1	NZ_CP010167	Escherichia coli strain H3 chromosome, complete genome	3	4036216-4036853	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,9	10	TypeI-E	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP010167.1_4028028_4028790_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010167.1_4028770_4029820_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010167.1_4029816_4030296_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010167.1_4030295_4031006_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010167.1_4031024_4031336_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010167.1_4031529_4031853_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010167.1_4031902_4032508_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010167.1_4032507_4033935_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010167.1_4033936_4034845_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010167.1_4035096_4036134_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010167.1_4036949_4037243_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP010167.1_4037239_4038163_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010167.1_4038159_4038810_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010167.1_4038791_4039538_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010167.1_4039548_4040604_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010167.1_4040615_4041152_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010167.1_4041148_4042711_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010167.1_4042808_4045508_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010167.1_4045701_4045854_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010167.1_4046118_4046853_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001900815.1_ASM190081v1	NZ_CP010167	Escherichia coli strain H3 chromosome, complete genome	4	4062553-4063862	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,21,20	21	Unclear	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP010167.1_4065011_4065152_+	NA|424aa|up_9|NZ_CP010167.1_4051196_4052468_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP010167.1_4052458_4052719_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP010167.1_4052735_4053311_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP010167.1_4053458_4054319_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010167.1_4054315_4055095_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010167.1_4055072_4056482_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010167.1_4056503_4057958_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010167.1_4058027_4058813_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010167.1_4059131_4060409_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010167.1_4060435_4061914_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010167.1_4064201_4064873_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010167.1_4065011_4065152_+	NA	NA|291aa|down_2|NZ_CP010167.1_4065165_4066038_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010167.1_4066097_4067396_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010167.1_4067483_4069121_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010167.1_4069348_4070140_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010167.1_4070210_4070546_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010167.1_4070545_4070794_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010167.1_4070871_4073106_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010167.1_4073153_4074455_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_001900815.1_ASM190081v1	NZ_CP010167	Escherichia coli strain H3 chromosome, complete genome	5	4175501-4175590	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	AAAAATGTCTAAAGCCCCTTTAGATAAAAAT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|124aa|up_8|NZ_CP010167.1_4169909_4170281_-,NA|72aa|up_7|NZ_CP010167.1_4170283_4170499_-,NA|70aa|up_6|NZ_CP010167.1_4171377_4171587_-,NA|103aa|up_5|NZ_CP010167.1_4171586_4171895_-,NA|63aa|up_4|NZ_CP010167.1_4171927_4172116_-,NA|127aa|up_3|NZ_CP010167.1_4172157_4172538_-,NA|86aa|up_2|NZ_CP010167.1_4172862_4173120_-,NA|222aa|up_1|NZ_CP010167.1_4173132_4173798_-,NA|61aa|up_0|NZ_CP010167.1_4173945_4174128_-,NA|69aa|down_2|NZ_CP010167.1_4178077_4178284_-	NA|343aa|up_9|NZ_CP010167.1_4168862_4169891_-	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|124aa|up_8|NZ_CP010167.1_4169909_4170281_-	NA	NA|72aa|up_7|NZ_CP010167.1_4170283_4170499_-	NA	NA|70aa|up_6|NZ_CP010167.1_4171377_4171587_-	NA	NA|103aa|up_5|NZ_CP010167.1_4171586_4171895_-	NA	NA|63aa|up_4|NZ_CP010167.1_4171927_4172116_-	NA	NA|127aa|up_3|NZ_CP010167.1_4172157_4172538_-	NA	NA|86aa|up_2|NZ_CP010167.1_4172862_4173120_-	NA	NA|222aa|up_1|NZ_CP010167.1_4173132_4173798_-	NA	NA|61aa|up_0|NZ_CP010167.1_4173945_4174128_-	NA	NA|184aa|down_0|NZ_CP010167.1_4176519_4177071_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|107aa|down_1|NZ_CP010167.1_4177723_4178044_+	pfam13992, YecR, YecR-like lipoprotein	NA|69aa|down_2|NZ_CP010167.1_4178077_4178284_-	NA	NA|252aa|down_3|NZ_CP010167.1_4178933_4179689_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|766aa|down_4|NZ_CP010167.1_4180103_4182401_+	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional	NA|293aa|down_5|NZ_CP010167.1_4182411_4183290_+	PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB; Provisional	NA|160aa|down_6|NZ_CP010167.1_4183286_4183766_+	PRK09908, PRK09908, xanthine dehydrogenase iron sulfur-binding subunit XdhC	NA|593aa|down_7|NZ_CP010167.1_4183805_4185584_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|397aa|down_8|NZ_CP010167.1_4186059_4187250_+	PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated	NA|399aa|down_9|NZ_CP010167.1_4187307_4188504_+	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase
GCF_001900815.1_ASM190081v1	NZ_CP010168	Escherichia coli strain H3 plasmid A, complete sequence	1	25639-25758	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|116aa|up_8|NZ_CP010168.1_17438_17786_-,NA|145aa|up_7|NZ_CP010168.1_18270_18705_+,NA|75aa|up_6|NZ_CP010168.1_18717_18942_+,NA|63aa|up_3|NZ_CP010168.1_22359_22548_+,NA|149aa|down_2|NZ_CP010168.1_27716_28163_+,NA|141aa|down_3|NZ_CP010168.1_28230_28653_+,NA|60aa|down_8|NZ_CP010168.1_32635_32815_-	NA|526aa|up_9|NZ_CP010168.1_15868_17446_-	cd01127, TrwB, Bacterial conjugation protein TrwB,  ATP binding domain	NA|116aa|up_8|NZ_CP010168.1_17438_17786_-	NA	NA|145aa|up_7|NZ_CP010168.1_18270_18705_+	NA	NA|75aa|up_6|NZ_CP010168.1_18717_18942_+	NA	NA|235aa|up_5|NZ_CP010168.1_18975_19680_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|265aa|up_4|NZ_CP010168.1_19986_20781_-	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|63aa|up_3|NZ_CP010168.1_22359_22548_+	NA	NA|400aa|up_2|NZ_CP010168.1_22557_23757_+	pfam04986, Y2_Tnp, Putative transposase	NA|94aa|up_1|NZ_CP010168.1_24253_24535_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP010168.1_24524_24776_-	PRK02854, PRK02854, primosomal protein DnaT	NA|280aa|down_0|NZ_CP010168.1_26010_26850_+	pfam01051, Rep_3, Initiator Replication protein	NA|281aa|down_1|NZ_CP010168.1_26870_27713_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_2|NZ_CP010168.1_27716_28163_+	NA	NA|141aa|down_3|NZ_CP010168.1_28230_28653_+	NA	NA|355aa|down_4|NZ_CP010168.1_29190_30255_-	pfam13614, AAA_31, AAA domain	NA|77aa|down_5|NZ_CP010168.1_30678_30909_-	pfam09274, ParG, ParG	NA|207aa|down_6|NZ_CP010168.1_30960_31581_-	cd02042, ParAB_family, partition proteins ParAB family	NA|215aa|down_7|NZ_CP010168.1_31875_32520_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|60aa|down_8|NZ_CP010168.1_32635_32815_-	NA	NA|235aa|down_9|NZ_CP010168.1_35506_36211_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
