assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901005.1_ASM190100v1	NZ_CP010178	Escherichia coli strain H15 chromosome, complete genome	1	293045-293141	1	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|NZ_CP010178.1_280924_282286_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP010178.1_282342_283644_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP010178.1_283665_284811_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP010178.1_284939_285725_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP010178.1_285735_286971_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP010178.1_286992_288042_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP010178.1_288358_290026_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP010178.1_290035_291295_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP010178.1_291305_292121_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP010178.1_292117_293011_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010178.1_293205_294273_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010178.1_294269_294779_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010178.1_294896_295619_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010178.1_295621_296116_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010178.1_296289_297675_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010178.1_297710_298232_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010178.1_298339_298552_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010178.1_298553_299420_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP010178.1_299900_300443_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP010178.1_300662_301355_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001901005.1_ASM190100v1	NZ_CP010178	Escherichia coli strain H15 chromosome, complete genome	2	535963-536102	2	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|50aa|up_9|NZ_CP010178.1_524942_525092_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP010178.1_525258_526032_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP010178.1_526031_526721_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP010178.1_526723_527782_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP010178.1_527782_528601_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP010178.1_528755_529751_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP010178.1_529791_530745_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP010178.1_530928_531981_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP010178.1_532056_533490_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP010178.1_533672_535934_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP010178.1_536167_537451_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_CP010178.1_537602_538079_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_CP010178.1_538137_539427_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_CP010178.1_539513_540554_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_CP010178.1_540550_541705_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_CP010178.1_541691_542447_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_CP010178.1_542439_543117_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_CP010178.1_543695_545717_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_CP010178.1_545908_546817_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_CP010178.1_547213_548203_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_001901005.1_ASM190100v1	NZ_CP010178	Escherichia coli strain H15 chromosome, complete genome	3	833974-834065	3	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|70aa|down_9|NZ_CP010178.1_844604_844814_+	NA|231aa|up_9|NZ_CP010178.1_823159_823852_-	PRK10766, PRK10766, two-component system response regulator TorR	NA|391aa|up_8|NZ_CP010178.1_823981_825154_+	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|849aa|up_7|NZ_CP010178.1_825153_827700_+	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|200aa|up_6|NZ_CP010178.1_827696_828296_+	PRK04976, torD, chaperone protein TorD; Validated	NA|102aa|up_5|NZ_CP010178.1_828388_828694_-	PRK10265, PRK10265, chaperone modulator CbpM	NA|307aa|up_4|NZ_CP010178.1_828693_829614_-	PRK10266, PRK10266, curved DNA-binding protein	NA|420aa|up_3|NZ_CP010178.1_829874_831134_+	PRK09784, PRK09784, YccE family protein	NA|414aa|up_2|NZ_CP010178.1_831426_832668_+	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|76aa|up_1|NZ_CP010178.1_832705_832933_-	PRK10174, PRK10174, hypothetical protein; Provisional	NA|199aa|up_0|NZ_CP010178.1_832953_833550_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|443aa|down_0|NZ_CP010178.1_834178_835507_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP010178.1_835527_836022_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP010178.1_836032_836623_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP010178.1_836632_837433_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP010178.1_837440_837827_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP010178.1_837838_838531_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP010178.1_838530_839622_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP010178.1_839909_840548_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP010178.1_840587_844550_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP010178.1_844604_844814_+	NA
GCF_001901005.1_ASM190100v1	NZ_CP010178	Escherichia coli strain H15 chromosome, complete genome	4	2683669-2684307	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP010178.1_2675481_2676243_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010178.1_2676223_2677273_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010178.1_2677269_2677749_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010178.1_2677748_2678459_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010178.1_2678477_2678789_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010178.1_2678982_2679306_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010178.1_2679355_2679961_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010178.1_2679960_2681388_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010178.1_2681389_2682298_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010178.1_2682549_2683587_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010178.1_2684403_2684697_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010178.1_2684696_2685617_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010178.1_2685613_2686264_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010178.1_2686245_2686992_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010178.1_2687002_2688058_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010178.1_2688069_2688606_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010178.1_2688602_2690165_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010178.1_2690262_2692962_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010178.1_2693156_2693309_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010178.1_2693573_2694308_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001901005.1_ASM190100v1	NZ_CP010178	Escherichia coli strain H15 chromosome, complete genome	5	2710007-2710828	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC	29,29,27	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Unclear	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP010178.1_2711977_2712118_+	NA|121aa|up_9|NZ_CP010178.1_2698211_2698574_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP010178.1_2698651_2699923_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP010178.1_2699913_2700174_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP010178.1_2700190_2700766_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_5|NZ_CP010178.1_2700913_2701774_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_4|NZ_CP010178.1_2701770_2702550_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP010178.1_2703957_2705412_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010178.1_2705481_2706267_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010178.1_2706585_2707863_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010178.1_2707889_2709368_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010178.1_2711167_2711839_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010178.1_2711977_2712118_+	NA	NA|291aa|down_2|NZ_CP010178.1_2712131_2713004_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010178.1_2713063_2714362_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010178.1_2714449_2716087_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010178.1_2716314_2717106_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010178.1_2717176_2717512_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010178.1_2717511_2717760_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010178.1_2717837_2720072_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010178.1_2720119_2721421_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
