assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001902455.1_ASM190245v1	NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	1	1447454-1447557	1	CRISPRCasFinder	no		cas3,DEDDh,DinG	Orphan	CTCTATAATATTTGTAGTGGGTAAATCCACTAT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG	NA,NA	NA|634aa|up_9|NZ_CP018347.1_1438425_1440327_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|92aa|up_8|NZ_CP018347.1_1440753_1441029_-	cd13831, HU, histone-like DNA-binding protein HU	NA|280aa|up_7|NZ_CP018347.1_1441135_1441975_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|283aa|up_6|NZ_CP018347.1_1442116_1442965_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|306aa|up_5|NZ_CP018347.1_1443057_1443975_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|98aa|up_4|NZ_CP018347.1_1444822_1445116_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|115aa|up_3|NZ_CP018347.1_1445132_1445477_-	COG2868, COG2868, Predicted ribosomal protein [Translation, ribosomal structure and biogenesis]	NA|105aa|up_2|NZ_CP018347.1_1445492_1445807_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|233aa|up_1|NZ_CP018347.1_1445994_1446693_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|100aa|up_0|NZ_CP018347.1_1447094_1447394_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|325aa|down_0|NZ_CP018347.1_1449286_1450261_-	PRK09653, eutD, phosphotransacetylase	NA|299aa|down_1|NZ_CP018347.1_1450304_1451201_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|273aa|down_2|NZ_CP018347.1_1451197_1452016_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|224aa|down_3|NZ_CP018347.1_1451999_1452671_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|190aa|down_4|NZ_CP018347.1_1452798_1453368_+	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|320aa|down_5|NZ_CP018347.1_1453480_1454440_+	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|372aa|down_6|NZ_CP018347.1_1454449_1455565_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|116aa|down_7|NZ_CP018347.1_1455569_1455917_+	pfam08866, DUF1831, Putative amino acid metabolism	NA|84aa|down_8|NZ_CP018347.1_1455888_1456140_+	pfam15507, DUF4649, Domain of unknown function (DUF4649)	NA|214aa|down_9|NZ_CP018347.1_1456222_1456864_+	COG2344, COG2344, AT-rich DNA-binding protein [General function prediction only]
GCF_001902455.1_ASM190245v1	NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	2	1799977-1800109	2	CRISPRCasFinder	no		cas3,DEDDh,DinG	Orphan	ACTTCTGGTGTCGGTACATTTGGTG	25	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG	NA,NA|532aa|down_3|NZ_CP018347.1_1808198_1809794_-	NA|120aa|up_9|NZ_CP018347.1_1792039_1792399_-	PRK07252, PRK07252, S1 RNA-binding domain-containing protein	NA|467aa|up_8|NZ_CP018347.1_1792400_1793801_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|80aa|up_7|NZ_CP018347.1_1794095_1794335_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|157aa|up_6|NZ_CP018347.1_1794366_1794837_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|97aa|up_5|NZ_CP018347.1_1794848_1795139_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|448aa|up_4|NZ_CP018347.1_1795291_1796635_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|75aa|up_3|NZ_CP018347.1_1796794_1797019_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|396aa|up_2|NZ_CP018347.1_1797011_1798199_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|144aa|up_1|NZ_CP018347.1_1798195_1798627_-	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown]	NA|183aa|up_0|NZ_CP018347.1_1799004_1799553_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|503aa|down_0|NZ_CP018347.1_1805602_1807111_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|243aa|down_1|NZ_CP018347.1_1807161_1807890_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|60aa|down_2|NZ_CP018347.1_1807968_1808148_-	pfam13129, DUF3953, Protein of unknown function (DUF3953)	NA|532aa|down_3|NZ_CP018347.1_1808198_1809794_-	NA	NA|137aa|down_4|NZ_CP018347.1_1809805_1810216_-	PRK09218, PRK09218, peptide deformylase; Validated	NA|264aa|down_5|NZ_CP018347.1_1810331_1811123_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|899aa|down_6|NZ_CP018347.1_1811135_1813832_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|395aa|down_7|NZ_CP018347.1_1814135_1815320_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|624aa|down_8|NZ_CP018347.1_1815462_1817334_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|400aa|down_9|NZ_CP018347.1_1817330_1818530_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional
GCF_001902455.1_ASM190245v1	NZ_CP018347	Streptococcus pneumoniae strain SWU02 chromosome, complete genome	3	2026197-2026281	3	CRISPRCasFinder	no		cas3,DEDDh,DinG	Orphan	CTTTTTTTGAAACGTTTCATTTTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG	NA|60aa|up_6|NZ_CP018347.1_2018723_2018903_-,NA|80aa|up_5|NZ_CP018347.1_2019067_2019307_-,NA	NA|157aa|up_9|NZ_CP018347.1_2017157_2017628_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|151aa|up_8|NZ_CP018347.1_2017918_2018371_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|69aa|up_7|NZ_CP018347.1_2018407_2018614_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|60aa|up_6|NZ_CP018347.1_2018723_2018903_-	NA	NA|80aa|up_5|NZ_CP018347.1_2019067_2019307_-	NA	NA|424aa|up_4|NZ_CP018347.1_2019576_2020848_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|440aa|up_3|NZ_CP018347.1_2021394_2022714_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|539aa|up_2|NZ_CP018347.1_2022723_2024340_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|297aa|up_1|NZ_CP018347.1_2024368_2025259_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|306aa|up_0|NZ_CP018347.1_2025269_2026187_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|334aa|down_0|NZ_CP018347.1_2026337_2027339_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|494aa|down_1|NZ_CP018347.1_2027700_2029182_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|55aa|down_2|NZ_CP018347.1_2029624_2029789_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|189aa|down_3|NZ_CP018347.1_2029872_2030439_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|57aa|down_4|NZ_CP018347.1_2030450_2030621_+	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|203aa|down_5|NZ_CP018347.1_2030659_2031268_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|68aa|down_6|NZ_CP018347.1_2031298_2031502_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|149aa|down_7|NZ_CP018347.1_2032028_2032475_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|220aa|down_8|NZ_CP018347.1_2032544_2033204_+	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain	NA|384aa|down_9|NZ_CP018347.1_2033255_2034407_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]
