The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	1476764	1483854	9136536		Salmonella_phage(16.67%)	6	NA	NA
WP_028173594.1|1476764_1477229_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	8.5e-45
WP_011084135.1|1477348_1477834_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	6.8e-21
WP_011084136.1|1477942_1478497_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	31.8	1.7e-15
WP_011084137.1|1478512_1480198_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.9	6.9e-44
WP_028173593.1|1480391_1481855_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.2	3.3e-26
WP_028173592.1|1482045_1483854_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.0	3.8e-32
>prophage 3
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	1980240	2023948	9136536	transposase	Mycobacterium_phage(20.0%)	43	NA	NA
WP_074076603.1|1980240_1981548_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.9	3.6e-93
WP_011084589.1|1981565_1982717_-	molybdenum ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_011084594.1|1983886_1984246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084595.1|1984720_1985023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084599.1|1987591_1988311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084600.1|1988365_1989115_-	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	43.6	4.4e-43
WP_026312712.1|1990374_1991094_-	insulinase family protein	NA	NA	NA	NA	NA
WP_018647480.1|1991093_1992440_-	insulinase family protein	NA	A0A2P1EIE5	Megavirus	22.2	1.8e-18
WP_011084605.1|1993127_1993580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084606.1|1993554_1993977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084607.1|1993997_1994420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084608.1|1994544_1995135_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011084609.1|1995165_1997265_-	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_028176036.1|1997274_1997703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084611.1|1997705_1998242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084612.1|1998275_1999169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497948.1|1999285_1999477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084613.1|1999519_1999828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084614.1|1999925_2000444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647482.1|2000736_2002191_+	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_011084514.1|2002345_2003410_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084616.1|2003980_2004184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084617.1|2004337_2004604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084618.1|2004549_2005053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084619.1|2005333_2006047_-	nodulation protein NolW	NA	NA	NA	NA	NA
WP_011084620.1|2006196_2006709_+	nodulation protein	NA	NA	NA	NA	NA
WP_011084621.1|2006717_2007581_+	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
WP_011084622.1|2007592_2008231_+	nodulation protein	NA	NA	NA	NA	NA
WP_011084623.1|2008227_2008848_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_011084624.1|2008844_2010200_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_011084625.1|2010175_2010712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084626.1|2010708_2011830_+	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_011084627.1|2011822_2012488_+	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_011084628.1|2012490_2012766_+	translocation protein	NA	NA	NA	NA	NA
WP_011084629.1|2012776_2013598_+	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
WP_011084630.1|2013594_2014632_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_144038027.1|2014641_2015402_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
WP_011084635.1|2017177_2018266_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011084636.1|2018651_2018873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|2018973_2020038_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084637.1|2021041_2021443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084638.1|2022277_2022484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041960889.1|2022613_2023948_-|transposase	IS5-like element ISBj2_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.6	2.1e-40
>prophage 4
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	2049343	2115905	9136536	transposase	Paenibacillus_phage(20.0%)	54	NA	NA
WP_011084661.1|2049343_2050354_-|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
WP_011084662.1|2050496_2050790_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_018648291.1|2050867_2051140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084664.1|2051373_2051757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084665.1|2051864_2052410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109866565.1|2052639_2053768_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
WP_156902880.1|2053804_2053954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084668.1|2054916_2055459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084669.1|2056012_2056219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018642727.1|2056608_2058000_-	MFS transporter	NA	NA	NA	NA	NA
WP_011084674.1|2059825_2060173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018648617.1|2061267_2061843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084676.1|2062619_2062865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084677.1|2063382_2063670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084678.1|2063999_2065808_-	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_144038027.1|2066190_2066950_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
WP_011084680.1|2067689_2068106_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_011084681.1|2068211_2068775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084682.1|2068790_2070119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084683.1|2070230_2070419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084684.1|2071525_2072140_+	J domain-containing protein	NA	NA	NA	NA	NA
WP_011084685.1|2073264_2074026_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_011084687.1|2075420_2075855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084688.1|2076319_2077774_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011084689.1|2078458_2078734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084690.1|2078761_2079040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080668297.1|2079071_2079263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084693.1|2080480_2080912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084694.1|2081257_2082643_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011084695.1|2082712_2083675_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_011084696.1|2083687_2084548_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_018645268.1|2084544_2085486_+	ribokinase	NA	NA	NA	NA	NA
WP_011084698.1|2085482_2086253_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_028175941.1|2086245_2087073_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_018645265.1|2087072_2088185_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	36.0	2.3e-24
WP_011084701.1|2088138_2089998_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084702.1|2090002_2090716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018645263.1|2091309_2092479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035667160.1|2092471_2093332_+	phosphoenolpyruvate hydrolase family protein	NA	NA	NA	NA	NA
WP_018645261.1|2093328_2095104_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	26.6	2.2e-24
WP_020607990.1|2096228_2096423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018645260.1|2096914_2097778_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_018645259.1|2097774_2098995_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080668299.1|2098994_2100071_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_018645257.1|2100057_2100792_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	25.8	4.8e-10
WP_018645256.1|2100784_2101480_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	27.0	3.5e-10
WP_020607989.1|2101535_2102813_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_131233137.1|2105035_2105236_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.1	1.1e-09
WP_018645230.1|2107780_2108800_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_018645229.1|2108928_2110485_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_074077663.1|2111807_2112137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084718.1|2112143_2113619_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	3.0e-27
WP_018642936.1|2113742_2115101_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_152104176.1|2115144_2115905_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
>prophage 5
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	2279322	2344214	9136536	protease,transposase	uncultured_virus(15.38%)	48	NA	NA
WP_011084854.1|2279322_2280219_+|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
WP_014497791.1|2281458_2283099_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	58.9	6.0e-170
WP_014497790.1|2283183_2283498_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	61.7	5.6e-24
WP_011084858.1|2284448_2285096_+	FkbM family methyltransferase	NA	Q58M88	Prochlorococcus_phage	26.9	5.9e-12
WP_011084859.1|2285918_2287115_-	flavin-dependent monooxygenase	NA	NA	NA	NA	NA
WP_011084860.1|2288336_2288615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084861.1|2288981_2289737_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_011084862.1|2289733_2290522_-	thermonuclease family protein	NA	NA	NA	NA	NA
WP_039183842.1|2290822_2292166_-|transposase	IS1380-like element ISBdi2 family transposase	transposase	NA	NA	NA	NA
WP_018646917.1|2293207_2294035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_131234261.1|2294278_2294569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084864.1|2295223_2297569_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_011084865.1|2297676_2297994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084866.1|2298064_2298193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026312600.1|2299598_2299805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084868.1|2302181_2302433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497780.1|2303541_2303727_+	hypothetical protein	NA	A0A1X9SH55	Bradyrhizobium_phage	63.8	9.2e-11
WP_039187468.1|2303884_2305384_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.1	6.0e-15
WP_039183785.1|2305383_2306247_+|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	36.7	1.1e-32
WP_122975537.1|2309439_2309622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084884.1|2309618_2310092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080668312.1|2310762_2311350_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.7	6.3e-45
WP_018646909.1|2311355_2312765_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	33.9	4.0e-45
WP_018646908.1|2312903_2313221_-	Dabb family protein	NA	NA	NA	NA	NA
WP_018646907.1|2313357_2313993_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_018646906.1|2314107_2315103_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_018646905.1|2315153_2315507_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_018646904.1|2315582_2316737_+	8-amino-7-oxononanoate synthase	NA	G9E4Q1	Emiliania_huxleyi_virus	28.2	1.9e-21
WP_011084893.1|2316733_2317369_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_018646903.1|2317365_2318631_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	4.9e-10
WP_011084895.1|2319525_2319843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074076610.1|2319859_2320756_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	36.9	6.7e-46
WP_011084897.1|2320759_2321611_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084898.1|2321623_2321983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080668311.1|2322648_2323056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497760.1|2323197_2323401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018648581.1|2323797_2324076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080668310.1|2325320_2325683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084904.1|2336777_2337572_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_018648598.1|2337998_2338265_+	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
WP_014497753.1|2338299_2338572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084906.1|2338540_2338771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084907.1|2338712_2338943_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_039183842.1|2339306_2340650_-|transposase	IS1380-like element ISBdi2 family transposase	transposase	NA	NA	NA	NA
WP_018648599.1|2340882_2341368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084909.1|2341364_2341685_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084910.1|2341697_2342822_+	hypothetical protein	NA	U5N3F3	Enterobacteria_phage	39.7	2.0e-71
WP_074076611.1|2343086_2344214_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.9e-18
>prophage 6
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	4374586	4382021	9136536	protease	uncultured_Mediterranean_phage(33.33%)	10	NA	NA
WP_049832391.1|4374586_4375702_-|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.4	2.9e-22
WP_011087990.1|4375774_4376275_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_011087989.1|4376359_4376821_-	Hsp20 family protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	39.4	3.7e-24
WP_011087988.1|4376950_4377340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028171491.1|4377336_4378263_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	34.1	4.6e-34
WP_028171492.1|4378428_4378887_-	Hsp20 family protein	NA	E3SM62	Prochlorococcus_phage	37.1	1.5e-17
WP_011087985.1|4379053_4379461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087984.1|4379479_4379827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087983.1|4380029_4381652_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.2	6.8e-174
WP_011087982.1|4381700_4382021_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	56.2	1.7e-23
>prophage 7
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	4880229	4890417	9136536	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_028171840.1|4880229_4881258_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.2e-22
WP_011087521.1|4881254_4882094_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	1.1e-31
WP_011087520.1|4882094_4882868_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	4.1e-44
WP_011087519.1|4883034_4883268_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_011087518.1|4883357_4883885_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_011087517.1|4883881_4884694_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	4.2e-55
WP_028171842.1|4884910_4886242_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.9	1.5e-97
WP_028171843.1|4886336_4886699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087514.1|4886803_4887655_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.6	2.7e-36
WP_011087513.1|4887658_4888030_-	response regulator	NA	NA	NA	NA	NA
WP_011087512.1|4888271_4888922_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	1.3e-27
WP_028171845.1|4889031_4890417_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	42.7	4.8e-19
>prophage 8
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	5201348	5235148	9136536	tail,portal,capsid,terminase	Mycobacterium_phage(15.0%)	42	NA	NA
WP_028174104.1|5201348_5201951_+	DNA ligase	NA	A0A1X9SH33	Bradyrhizobium_phage	66.3	3.4e-70
WP_028174105.1|5202035_5202302_-	hypothetical protein	NA	A0A068C9A1	Rhizobium_phage	47.6	1.9e-12
WP_049832505.1|5202353_5202713_-	hypothetical protein	NA	Q5GQH9	Synechococcus_phage	35.6	1.7e-08
WP_028174106.1|5202709_5203075_-	DUF1515 domain-containing protein	NA	NA	NA	NA	NA
WP_028174107.1|5203134_5203425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174108.1|5203421_5203838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174109.1|5203847_5204201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049832506.1|5204389_5205163_-	amidase	NA	Q9ZX49	Mycobacterium_phage	43.4	7.6e-30
WP_080668168.1|5205231_5206356_+	acyltransferase	NA	Q6QI96	Burkholderia_phage	26.5	2.9e-06
WP_028174111.1|5206349_5208947_-|tail	tail fiber protein	tail	A0A076GD25	Sinorhizobium_phage	46.5	1.5e-13
WP_080668171.1|5208982_5210368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174113.1|5210441_5214197_-|tail	tail fiber protein	tail	M4T544	Rhodobacter_phage	32.4	5.7e-99
WP_039184482.1|5214199_5214601_-|tail	tail assembly protein	tail	NA	NA	NA	NA
WP_028174115.1|5214597_5215101_-	DUF1833 domain-containing protein	NA	A0A1B0T6D7	Thiobacimonas_phage	37.8	3.2e-21
WP_028174116.1|5215097_5215457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174117.1|5215456_5217535_-|tail	phage tail tape measure protein	tail	D6PGB3	uncultured_phage	32.2	1.5e-11
WP_028174118.1|5217531_5217825_-	hypothetical protein	NA	A0A1X9IAV0	Xanthomonas_phage	37.7	4.9e-06
WP_028174119.1|5217890_5218340_-	branched-chain amino acid ABC transporter	NA	NA	NA	NA	NA
WP_028174120.1|5218384_5219611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174121.1|5219626_5220082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174122.1|5220081_5220555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174123.1|5220556_5220871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174124.1|5220870_5221251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174125.1|5221247_5221631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174126.1|5221671_5221983_-	hypothetical protein	NA	A0A0M4RBJ6	Mycobacterium_phage	35.3	2.3e-06
WP_028174127.1|5221982_5222603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174128.1|5222666_5223101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039184473.1|5223239_5224556_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_028174130.1|5224657_5225518_-	S49 family peptidase	NA	H6WYH0	Enterobacter_phage	34.7	2.0e-23
WP_028174131.1|5225501_5226827_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	32.5	9.9e-46
WP_028174132.1|5226826_5228542_-|terminase	terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	41.1	5.4e-113
WP_028174133.1|5228542_5228965_-	hypothetical protein	NA	I3ULZ5	Rhodobacter_phage	40.9	1.4e-14
WP_131234214.1|5229117_5229450_-	hypothetical protein	NA	A0A1J0GUW4	Halomonas_phage	47.0	2.1e-21
WP_028174135.1|5229461_5229737_-	HNH endonuclease	NA	A8B112	Xanthomonas_virus	46.9	8.6e-13
WP_028174136.1|5229985_5230651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_131234215.1|5230647_5231799_-	helix-turn-helix domain-containing protein	NA	A0A291AUK7	Sinorhizobium_phage	31.4	5.4e-24
WP_028174138.1|5231869_5232148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049832507.1|5232140_5232647_-	SANT/Myb domain-containing protein	NA	NA	NA	NA	NA
WP_028174139.1|5232643_5232856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174140.1|5232852_5234436_-	DNA methyltransferase	NA	A0A076G9A5	Mycobacterium_phage	28.0	1.3e-39
WP_039184466.1|5234432_5234630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028174141.1|5234626_5235148_-	hypothetical protein	NA	A0A291AUJ5	Sinorhizobium_phage	50.0	3.8e-17
>prophage 9
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	6897818	6907408	9136536		Escherichia_phage(42.86%)	8	NA	NA
WP_074077141.1|6897818_6900122_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	6.6e-13
WP_028172386.1|6900190_6901882_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.0	1.1e-12
WP_028172387.1|6902052_6903327_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.0	1.8e-73
WP_028172388.1|6903323_6904106_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_028172389.1|6904122_6905040_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.6	1.4e-67
WP_028172390.1|6905131_6905827_+	aldolase	NA	A0A077SK32	Escherichia_phage	49.3	6.1e-47
WP_028172391.1|6905988_6906693_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	3.8e-12
WP_011085709.1|6906676_6907408_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.9e-12
>prophage 10
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	7869083	7904503	9136536	transposase	Escherichia_phage(28.57%)	34	NA	NA
WP_039187468.1|7869083_7870583_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.1	6.0e-15
WP_039183785.1|7870582_7871446_+|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	36.7	1.1e-32
WP_074077756.1|7871676_7872771_+|transposase	IS110-like element ISBj4 family transposase	transposase	NA	NA	NA	NA
WP_131234271.1|7873121_7873355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028176073.1|7873519_7874908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090410.1|7876083_7876284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083635962.1|7876674_7876986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074077349.1|7877006_7877321_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_109866565.1|7877617_7878747_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
WP_039187448.1|7879564_7879936_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_074077351.1|7879932_7880391_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	63.6	1.9e-33
WP_074077353.1|7880400_7880691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_131234270.1|7881235_7881739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074077354.1|7881845_7882028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074077356.1|7882198_7882426_-	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
WP_122975538.1|7883071_7883311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083635965.1|7883274_7883712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090416.1|7884008_7885808_-	monooxygenase	NA	NA	NA	NA	NA
WP_011090417.1|7885889_7886135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028176057.1|7886122_7887463_-	adenylate/guanylate cyclase domain-containing protein	NA	W5S556	Pithovirus	27.3	1.5e-09
WP_028176056.1|7888139_7889339_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_074076799.1|7889579_7890782_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_011090422.1|7891681_7892548_+	porin family protein	NA	NA	NA	NA	NA
WP_039185326.1|7892719_7893352_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011090425.1|7897615_7897927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090426.1|7898144_7898336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090427.1|7898420_7898633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053815160.1|7898648_7899005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083635967.1|7899431_7900454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063789848.1|7900637_7901090_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_156902900.1|7901322_7901796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074077363.1|7901958_7902138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039183785.1|7902140_7903004_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	36.7	1.1e-32
WP_039187468.1|7903003_7904503_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.1	6.0e-15
>prophage 11
NZ_CP013127	Bradyrhizobium diazoefficiens strain USDA 122, complete genome	9136536	9051011	9076250	9136536	integrase,transposase	Klebsiella_phage(16.67%)	20	9041355:9041371	9055608:9055624
9041355:9041371	attL	TCATGGTGCTCGACGAC	NA	NA	NA	NA
WP_011090895.1|9051011_9052253_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_011090896.1|9052195_9053593_+	DUF1016 domain-containing protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.4e-112
WP_011090897.1|9053594_9054848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|9054938_9057428_-	AAA family ATPase	NA	NA	NA	NA	NA
9055608:9055624	attR	GTCGTCGAGCACCATGA	NA	NA	NA	NA
WP_014498594.1|9057424_9057649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090899.1|9057738_9058605_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011090900.1|9058674_9059337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498597.1|9059374_9061162_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011085265.1|9061202_9062312_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_011090918.1|9062361_9063225_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011090919.1|9063224_9064724_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
WP_011084668.1|9065023_9065566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080668329.1|9066535_9067066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090921.1|9067037_9067442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498651.1|9067614_9068070_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011090925.1|9069653_9069983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090926.1|9069983_9070148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090929.1|9070855_9071071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090930.1|9071120_9072254_-	FAD-dependent oxidoreductase	NA	A0A2K9L3K5	Tupanvirus	24.4	3.1e-08
WP_011090936.1|9074708_9076250_+|transposase	IS21-like element ISFK1 family transposase	transposase	K4I413	Acidithiobacillus_phage	44.3	2.0e-127
