The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	364944	408695	4856460	integrase,coat,lysis,terminase,holin,protease,tail,portal	Salmonella_phage(41.54%)	66	355713:355729	417389:417405
355713:355729	attL	GATATTGAAATTCGCGT	NA	NA	NA	NA
WP_001043675.1|364944_365997_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
WP_001285275.1|366279_367383_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_000893231.1|367394_368645_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
WP_022630914.1|368850_370014_-|integrase	site-specific integrase	integrase	A0A220NQU7	Salmonella_phage	98.2	2.1e-225
WP_153266261.1|370243_370384_-	hypothetical protein	NA	A0A0M4QWX3	Salmonella_phage	100.0	3.2e-16
WP_022630917.1|370850_371324_-	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	79.5	3.3e-68
WP_022630919.1|371774_372074_-	hypothetical protein	NA	A5VWB2	Enterobacteria_phage	96.0	3.1e-56
WP_022630920.1|372070_372469_-	hypothetical protein	NA	A0A222YY85	Escherichia_phage	72.0	3.5e-31
WP_023167639.1|372465_372630_-	DUF2737 family protein	NA	A0A2I6PID4	Escherichia_phage	98.1	5.5e-23
WP_022630922.1|372640_372934_-	DUF2856 family protein	NA	Q5G8U3	Enterobacteria_phage	87.6	3.8e-43
WP_001253478.1|372980_373265_-	Anti-RecBCD protein 1	NA	E7C9P9	Salmonella_phage	97.9	1.5e-44
WP_022630923.1|373264_373972_-	recombinase	NA	A0A1R3Y600	Salmonella_virus	99.6	2.6e-138
WP_000902087.1|373968_374112_-	hypothetical protein	NA	A0A1R3Y5R4	Salmonella_virus	100.0	2.4e-19
WP_001749553.1|374101_374290_-	DUF5444 family protein	NA	B8K1E1	Salmonella_phage	100.0	1.6e-31
WP_015995137.1|374270_374423_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	B8K1E2	Salmonella_phage	100.0	3.2e-25
WP_024144163.1|374746_375037_-	hypothetical protein	NA	A0A1R3Y5U4	Salmonella_virus	73.3	1.1e-31
WP_022630926.1|375068_375311_-	hypothetical protein	NA	U5PUY0	Salmonella_phage	58.4	7.8e-18
WP_022630927.1|375338_375539_-	antirestriction Ral family protein	NA	A0A1R3Y5S4	Salmonella_virus	97.0	1.1e-30
WP_001682202.1|375753_376332_+	superinfection exclusion B family protein	NA	A0A075B8E6	Enterobacteria_phage	100.0	8.8e-92
WP_015975212.1|376352_376655_-	hypothetical protein	NA	A0A075B8K6	Enterobacteria_phage	100.0	3.7e-49
WP_001095984.1|377008_377659_-	LexA family transcriptional regulator	NA	B1B6L9	Salmonella_phage	100.0	5.4e-122
WP_000276884.1|377739_377925_+	Cro/Cl family transcriptional regulator	NA	Q5G8T3	Enterobacteria_phage	100.0	5.4e-27
WP_000424167.1|378031_378310_+	lambda phage CII family protein	NA	Q5G8T2	Enterobacteria_phage	100.0	2.5e-44
WP_001125981.1|378344_378491_+	DUF2740 family protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
WP_000067075.1|378483_379299_+	replication protein	NA	A0A075B8J2	Enterobacteria_phage	100.0	9.4e-148
WP_001248406.1|379295_380672_+	DNA helicase	NA	A0A075B8G2	Enterobacteria_phage	100.0	3.3e-254
WP_000736921.1|380745_381183_+	recombination protein NinB	NA	A8CGE3	Salmonella_phage	100.0	1.3e-79
WP_000679702.1|381179_381353_+	hypothetical protein	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
WP_000113772.1|381319_381496_+	NinE family protein	NA	I6RSQ2	Salmonella_phage	100.0	4.6e-28
WP_001531428.1|381498_381831_+	DUF2591 domain-containing protein	NA	A0A075B8G3	Enterobacteria_phage	100.0	3.5e-61
WP_000950959.1|381823_382000_+	protein ninF	NA	I6S668	Salmonella_phage	100.0	2.5e-26
WP_001129733.1|381992_382604_+	recombination protein NinG	NA	A0A075B8E9	Enterobacteria_phage	100.0	1.3e-98
WP_000036317.1|382600_382825_+	hypothetical protein	NA	Q5G8R9	Enterobacteria_phage	100.0	2.2e-38
WP_000149926.1|382821_383025_+	phage NinH family protein	NA	Q5G8R8	Enterobacteria_phage	100.0	7.2e-33
WP_000219138.1|383005_383185_+	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	100.0	7.1e-24
WP_001235452.1|383181_383805_+	antitermination protein	NA	K7PM87	Enterobacteria_phage	87.0	8.3e-96
WP_022630928.1|384130_384649_+	HNH endonuclease	NA	A0A1V0E5R7	Salmonella_phage	66.9	6.3e-57
WP_000738703.1|384873_385200_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_001167374.1|385183_385621_+	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	6.3e-74
WP_011233123.1|385638_386088_+|lysis	lysis protein	lysis	A0A2D1GLQ7	Escherichia_phage	87.8	3.0e-63
WP_001028469.1|386300_386822_+	KilA-N domain-containing protein	NA	H6WRZ8	Salmonella_phage	100.0	1.9e-101
WP_000808099.1|387145_387388_+	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
WP_001140562.1|387391_387781_+	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
WP_001687044.1|387780_388185_+	hypothetical protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
WP_000729923.1|388188_388677_+	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
WP_022630929.1|388654_390154_+|terminase	terminase large subunit	terminase	Q76H24	Enterobacteria_phage	99.8	8.2e-307
WP_000774649.1|390153_392331_+|portal	portal protein	portal	A0A075B8I1	Enterobacteria_phage	100.0	0.0e+00
WP_000433852.1|392344_393256_+	scaffold protein	NA	A0A192Y6T4	Salmonella_phage	100.0	4.9e-161
WP_001196937.1|393255_394548_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	100.0	1.1e-243
WP_000684729.1|394586_394796_+	hypothetical protein	NA	A0A192Y697	Salmonella_phage	100.0	1.3e-32
WP_015975196.1|394779_395280_+	packaged DNA stabilization gp4 family protein	NA	A0A192Y830	Salmonella_phage	100.0	3.2e-90
WP_001122424.1|395239_396658_+	packaged DNA stabilization protein gp10	NA	A0A075B8I2	Enterobacteria_phage	100.0	7.6e-278
WP_022630932.1|396661_397300_+|tail	tail protein	tail	A8CGD2	Salmonella_phage	99.5	2.4e-90
WP_022630933.1|397299_397755_+	DUF2824 family protein	NA	A0A1R3Y5P3	Salmonella_virus	99.3	3.9e-87
WP_022630934.1|397757_398447_+	hypothetical protein	NA	A0A192Y6A3	Salmonella_phage	98.7	6.8e-115
WP_015975198.1|398457_399873_+	DNA transfer protein	NA	A0A192Y834	Salmonella_phage	100.0	6.2e-248
WP_058657166.1|399872_401702_+	hypothetical protein	NA	A0A192Y934	Salmonella_phage	99.5	0.0e+00
WP_000889769.1|401719_402049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000757527.1|402079_402445_+	hypothetical protein	NA	E7C9U7	Salmonella_phage	100.0	8.1e-67
WP_015975201.1|402458_402638_-	hypothetical protein	NA	A0A192Y6A8	Salmonella_phage	100.0	6.2e-28
WP_015975190.1|402737_402989_-	Arc family DNA-binding protein	NA	A0A192Y840	Salmonella_phage	100.0	9.9e-40
WP_015975191.1|403079_403241_+	Arc family DNA-binding protein	NA	A8CG91	Salmonella_phage	100.0	1.2e-22
WP_015975192.1|403309_404212_+	phage antirepressor Ant	NA	A0A192Y6V0	Salmonella_phage	100.0	8.5e-174
WP_075146406.1|404422_406390_+	hypothetical protein	NA	T1SBJ2	Salmonella_phage	96.6	2.9e-304
WP_024143049.1|406425_408348_-	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	97.2	0.0e+00
WP_126790267.1|408419_408695_-	GtrA family protein	NA	A0A1R3Y5Q2	Salmonella_virus	96.7	1.6e-43
417389:417405	attR	GATATTGAAATTCGCGT	NA	NA	NA	NA
>prophage 2
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	1016578	1025310	4856460	transposase,protease	Dickeya_phage(14.29%)	7	NA	NA
WP_001201751.1|1016578_1017697_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125877.1|1017693_1019640_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|1019769_1019991_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1020314_1020635_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934063.1|1020665_1022942_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000502119.1|1023133_1023592_+|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_109182773.1|1024054_1025310_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.3	1.2e-16
>prophage 3
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	1075406	1174216	4856460	tRNA,lysis,terminase,holin,protease,tail,portal	Salmonella_phage(44.64%)	100	NA	NA
WP_001154025.1|1075406_1076210_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1076202_1077525_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1077505_1078210_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572724.1|1078209_1082676_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925872.1|1083020_1084862_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1085121_1085670_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1085697_1086345_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1086406_1087597_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977713.1|1087781_1088873_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
WP_000117870.1|1089479_1090880_-|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000762342.1|1091080_1091542_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544849.1|1091858_1093073_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000893207.1|1093317_1094754_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191399.1|1094831_1096034_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262306.1|1096228_1097521_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
WP_000065276.1|1097565_1097814_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1097854_1098094_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001539618.1|1098136_1099294_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
WP_020979285.1|1099256_1102142_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	97.6	0.0e+00
WP_014344461.1|1102268_1102568_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	83.6	1.4e-48
WP_000917564.1|1102589_1102748_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
WP_014344008.1|1102740_1103001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038966.1|1103050_1103461_-	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
WP_000370145.1|1103580_1103820_+	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
WP_001574095.1|1103785_1104160_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_000062941.1|1104244_1105228_+	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_000800010.1|1105230_1105980_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
WP_000113629.1|1105990_1106338_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
WP_000065108.1|1106334_1106646_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
WP_014343823.1|1106723_1107014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217665.1|1107305_1107539_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_000807548.1|1107650_1107872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000929805.1|1107954_1108557_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
WP_001096552.1|1108765_1109377_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
WP_001617856.1|1109373_1109520_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047631.1|1109509_1110307_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
WP_010989004.1|1110373_1110691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001534733.1|1110864_1110990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1111125_1111575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001141973.1|1111935_1112622_-|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
WP_001574216.1|1112897_1113227_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_015701345.1|1113210_1113663_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
WP_075146581.1|1113680_1114160_+|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	79.3	5.1e-53
WP_000371784.1|1114367_1114901_+	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
WP_000989241.1|1114857_1116996_+|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
WP_000196190.1|1116992_1117199_+	hypothetical protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
WP_001009207.1|1117195_1118743_+|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	64.3	2.8e-177
WP_010989008.1|1118666_1120748_+|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
WP_001107908.1|1120838_1121162_+	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
WP_000774239.1|1121154_1121454_+	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
WP_000453194.1|1121434_1122001_+|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
WP_000196701.1|1121997_1122399_+|tail	tail protein	tail	K7PHM6	Enterobacterial_phage	60.2	2.6e-42
WP_000132756.1|1122410_1123160_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
WP_000478859.1|1123205_1123604_+|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
WP_010989009.1|1123600_1123930_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
WP_078049165.1|1124009_1126997_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	3.1e-265
WP_000978296.1|1126993_1127326_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
WP_000725267.1|1127424_1127922_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
WP_000877926.1|1128038_1128572_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152415.1|1128661_1129357_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
WP_000606351.1|1129366_1130104_+|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
WP_000246065.1|1130001_1130706_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
WP_022562288.1|1130777_1134128_+	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
WP_000178853.1|1134166_1134409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075146435.1|1134462_1136901_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	63.3	8.3e-91
WP_000143167.1|1136900_1137482_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_075146437.1|1137959_1138928_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	98.1	2.1e-191
WP_000334547.1|1139575_1140202_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_001525490.1|1140553_1141240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|1141510_1141702_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193784.1|1142128_1144741_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
WP_000291723.1|1144948_1145959_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1146124_1146667_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224069.1|1146663_1147773_-	YcbX family protein	NA	NA	NA	NA	NA
WP_001086485.1|1147871_1149980_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1149992_1151900_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333152.1|1151914_1153168_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|1153172_1154813_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1154809_1155373_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1155628_1155796_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1155895_1156414_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156453.1|1156482_1158243_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|1158428_1158881_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1158952_1160005_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|1160361_1160871_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1161087_1161693_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950880.1|1161679_1163833_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1163851_1164298_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|1164421_1166476_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1166511_1166970_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1167064_1167727_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1167900_1168314_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1168358_1168676_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1168733_1169945_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859419.1|1170159_1170708_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548082.1|1170733_1171513_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000072884.1|1171561_1171843_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1171839_1172169_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374050.1|1172255_1172915_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
WP_000938191.1|1173535_1174216_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
>prophage 4
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	2044534	2123891	4856460	transposase,integrase,head,plate,terminase,lysis,holin,protease,tail,portal	Salmonella_phage(85.48%)	98	2051072:2051087	2125514:2125529
WP_000502119.1|2044534_2044993_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
WP_000659236.1|2045173_2046379_-	flagellin lysine-N-methylase	NA	NA	NA	NA	NA
WP_000079805.1|2046457_2047945_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_000146802.1|2048201_2049605_+	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_075146474.1|2049619_2050027_+	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_000204899.1|2050026_2050395_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA	NA
WP_000795487.1|2050466_2051951_+	alpha-amylase	NA	NA	NA	NA	NA
2051072:2051087	attL	TGAAAATATCGATTTT	NA	NA	NA	NA
WP_000754695.1|2051990_2052416_-	lipoprotein	NA	NA	NA	NA	NA
WP_001535233.1|2052601_2053807_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA	NA
WP_000790504.1|2053803_2054037_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_000639596.1|2054301_2054688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719036.1|2054807_2055122_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001276834.1|2055338_2057021_+	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_000067735.1|2057013_2058009_+	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_000064163.1|2058001_2058709_+	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000213257.1|2058708_2060079_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_075146475.1|2060100_2060544_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA	NA
WP_000631669.1|2060540_2061758_+	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000132169.1|2061862_2062330_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000502811.1|2062334_2063339_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_001282115.1|2063335_2063749_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_000978276.1|2063748_2064126_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001253410.1|2064125_2064863_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_000187355.1|2064872_2065142_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_000616953.1|2065150_2065945_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000103974.1|2066226_2066850_+	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_000867218.1|2066888_2067083_-	protein DsrB	NA	NA	NA	NA	NA
WP_000844798.1|2067211_2067439_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA	NA
WP_000948794.1|2067748_2068564_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA	NA
WP_001119821.1|2068542_2070255_-	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.2e-19
WP_000232161.1|2070419_2070605_-	YodC family protein	NA	NA	NA	NA	NA
WP_085983315.1|2070681_2071599_-	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001212264.1|2071768_2072689_+	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000785978.1|2072677_2073148_-	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001157322.1|2073128_2074559_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377041.1|2074632_2075328_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|2075419_2075719_-	membrane protein	NA	NA	NA	NA	NA
WP_001080680.1|2076368_2077565_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
WP_024131109.1|2077825_2078014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2078024_2078237_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457662.1|2078691_2079960_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
WP_000394196.1|2079962_2080382_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_000500831.1|2080508_2080670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526483.1|2081300_2081522_-	helix-turn-helix domain-containing protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
WP_000492926.1|2081733_2082741_+	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
WP_015701331.1|2083025_2083625_-|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	5.9e-107
WP_001207832.1|2085142_2085730_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
WP_014343855.1|2085732_2086254_-|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	100.0	2.9e-94
WP_000605050.1|2086806_2087220_-	phage GP46 family protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
WP_001273649.1|2087224_2087758_-|plate	phage baseplate assembly protein	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
WP_001066636.1|2087757_2088816_-	hypothetical protein	NA	Q8HAC0	Salmonella_phage	100.0	1.3e-202
WP_000863818.1|2088812_2090153_-	DNA circularization N-terminal domain-containing protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
WP_075146476.1|2090186_2092118_-|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.5	0.0e+00
WP_000588852.1|2092202_2092529_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000515952.1|2092525_2092882_-|tail	phage tail tube protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_000497739.1|2094368_2094533_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
WP_000779218.1|2094536_2095097_-	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
WP_001135697.1|2095093_2095606_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
WP_000702408.1|2095577_2095982_-|head	phage head closure protein	head	Q8HAC9	Salmonella_phage	100.0	1.4e-72
WP_000927378.1|2095978_2096302_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
WP_000601353.1|2096304_2096505_-	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
WP_001193639.1|2097785_2098436_-|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
WP_000466254.1|2098413_2099655_-|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
WP_000605609.1|2099654_2099837_-	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
WP_075146477.1|2099848_2101582_-|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	99.8	0.0e+00
WP_000929191.1|2101578_2102073_-|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
WP_001135225.1|2102198_2102549_-	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
WP_001292890.1|2102609_2102912_-	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
WP_000877027.1|2103131_2103551_-	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
WP_001050825.1|2103763_2104249_-|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
WP_001005901.1|2104245_2104860_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
WP_001527046.1|2104862_2105207_-|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
WP_014343859.1|2105368_2105803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527054.1|2105732_2105990_-	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
WP_000188927.1|2106122_2106746_-	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
WP_075146478.1|2106756_2107746_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	3.2e-190
WP_075146479.1|2107753_2108614_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	99.7	1.4e-162
WP_023139095.1|2108630_2109020_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	99.2	2.4e-69
WP_000066908.1|2109016_2109910_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
WP_001684745.1|2109909_2110392_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
WP_000061500.1|2110393_2111212_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
WP_000620702.1|2111208_2111433_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_001087402.1|2111429_2112587_-	Rha family phage regulatory protein	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
WP_000509731.1|2112583_2113138_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|2113166_2113391_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_001020636.1|2113488_2114184_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
WP_000997190.1|2114998_2115370_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_000080415.1|2115427_2116255_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
WP_000008351.1|2116391_2116931_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_000764235.1|2117001_2117232_+	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
WP_000071070.1|2117228_2117744_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
WP_000065095.1|2117740_2118358_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
WP_000208068.1|2118354_2119188_+	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
WP_001061334.1|2119191_2119761_+	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
WP_001527041.1|2119800_2120028_+	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	3.2e-37
WP_000532847.1|2120029_2121019_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
WP_000598920.1|2121310_2122108_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001219015.1|2123417_2123891_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
2125514:2125529	attR	TGAAAATATCGATTTT	NA	NA	NA	NA
>prophage 5
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	2209881	2220387	4856460		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2209881_2211195_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565905.1|2211221_2212301_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
WP_000648784.1|2212305_2213079_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018226.1|2213075_2214068_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973708.1|2214073_2214625_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
WP_000857529.1|2214625_2215504_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
WP_001023662.1|2215551_2216451_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697840.1|2216450_2217536_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_000981469.1|2217912_2218806_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111841.1|2218983_2220387_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
>prophage 6
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	2288695	2297866	4856460	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_075146485.1|2288695_2290729_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|2290969_2291428_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197952.1|2291599_2292130_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2292186_2292654_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2292700_2293420_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|2293416_2295102_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240418.1|2295324_2296056_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2296115_2296223_+	protein YohO	NA	NA	NA	NA	NA
WP_000824855.1|2296203_2296935_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2296918_2297866_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 7
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	2317273	2383656	4856460	lysis,tail,holin	Salmonella_phage(30.0%)	59	NA	NA
WP_000989296.1|2317273_2317969_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_000553526.1|2318122_2319007_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_000920081.1|2319183_2319903_+	outer membrane permeability protein SanA	NA	NA	NA	NA	NA
WP_000605187.1|2319899_2320145_+	DUF2542 family protein	NA	NA	NA	NA	NA
WP_075146486.1|2320349_2321591_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000956095.1|2321584_2322820_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA	NA
WP_001275101.1|2322894_2323905_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA	NA
WP_000535907.1|2323920_2325441_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	1.0e-09
WP_023139082.1|2325574_2326573_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA	NA
WP_000628631.1|2327071_2328094_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA	NA
WP_075146584.1|2328243_2329386_-	DUF418 family protein	NA	NA	NA	NA	NA
WP_001139611.1|2329400_2330069_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	56.3	4.1e-56
WP_000425488.1|2330398_2331256_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000876817.1|2331244_2331634_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000443208.1|2331638_2333006_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_075146487.1|2333222_2334110_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_000023807.1|2334142_2335465_+	MFS transporter	NA	NA	NA	NA	NA
WP_000488255.1|2335508_2337500_-	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
WP_000535000.1|2337844_2339314_-	lysine-specific permease	NA	NA	NA	NA	NA
WP_000548308.1|2339503_2340367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000137961.1|2340487_2341537_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000873909.1|2341615_2342473_+	deoxyribonuclease IV	NA	A0A1V0SBL9	Catovirus	28.5	2.2e-22
WP_000854414.1|2342537_2344226_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_000091249.1|2344242_2345181_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_000487287.1|2345180_2346311_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA	NA
WP_000551937.1|2346679_2347861_+	sugar efflux transporter SetB	NA	NA	NA	NA	NA
WP_001213882.1|2347925_2348591_-	membrane protein	NA	NA	NA	NA	NA
WP_001519564.1|2348592_2348715_-	membrane protein	NA	NA	NA	NA	NA
WP_010989043.1|2349102_2349357_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001136822.1|2349680_2350253_+	elongation factor P-like protein YeiP	NA	NA	NA	NA	NA
WP_000169350.1|2350465_2351452_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_000178095.1|2351481_2352201_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000241015.1|2352614_2353187_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
WP_000957746.1|2353512_2355069_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA	NA
WP_000561748.1|2355175_2356981_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000501623.1|2356990_2358085_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_001137764.1|2358084_2359110_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000203622.1|2359111_2360701_+	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.5	8.5e-20
WP_001094639.1|2360704_2361049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213347.1|2361439_2362630_-	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	2.4e-19
WP_001234836.1|2362657_2363353_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000578121.1|2363504_2365265_+	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	1.9e-100
WP_000494192.1|2365389_2365674_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_000033440.1|2365782_2366403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000050806.1|2366430_2367438_-	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_001135904.1|2367617_2367845_+	YejL family protein	NA	NA	NA	NA	NA
WP_000256150.1|2367876_2369637_+	cardiolipin transport protein PbgA	NA	NA	NA	NA	NA
WP_000806401.1|2369917_2370421_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
WP_000884778.1|2370448_2370739_+	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
WP_000639473.1|2371075_2372905_+	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
WP_000022213.1|2372958_2373402_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
WP_001215679.1|2373779_2374307_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
WP_000554739.1|2374309_2375551_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
WP_001120499.1|2376143_2376473_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
WP_000894640.1|2376769_2378101_+	AAA family ATPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
WP_010989045.1|2378129_2378498_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
WP_075146488.1|2378512_2379502_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.9	3.7e-191
WP_001113462.1|2382364_2382568_-|tail	tail protein	tail	NA	NA	NA	NA
WP_000624225.1|2382864_2383656_-|tail	tail fiber protein	tail	Q1MVL8	Enterobacteria_phage	31.6	1.7e-48
>prophage 8
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	2722491	2829605	4856460	tRNA,transposase,capsid,integrase,head,lysis,terminase,holin,protease,tail,portal	Salmonella_phage(33.33%)	112	2747045:2747061	2837509:2837525
WP_000940032.1|2722491_2723223_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_000553467.1|2723341_2724145_+	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000174944.1|2724289_2725168_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
WP_023139062.1|2725349_2726393_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA	NA
WP_000017587.1|2726396_2727215_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
WP_000020685.1|2727225_2728239_+	sulfite reductase subunit C	NA	NA	NA	NA	NA
WP_000111027.1|2728239_2729226_-	nickel/cobalt transporter	NA	NA	NA	NA	NA
WP_000805728.1|2729216_2729855_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_000982961.1|2729980_2731258_+	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
WP_001173729.1|2731252_2732392_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_000919178.1|2732587_2733841_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
WP_000883146.1|2734165_2735356_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_001187150.1|2735537_2737082_+	lysine decarboxylation/transport transcriptional activator CadC	NA	NA	NA	NA	NA
WP_000100008.1|2737442_2738774_+	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_001100652.1|2738856_2741001_+	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000856793.1|2741056_2742517_+	dipeptide permease DtpD	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
WP_000717694.1|2742565_2742904_-	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000625591.1|2742980_2744318_-	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_001054236.1|2744314_2745079_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
WP_001670672.1|2745080_2746511_-	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
2747045:2747061	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
WP_000970045.1|2747169_2751057_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
WP_001747289.1|2751078_2751312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000734248.1|2751312_2752857_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
WP_001134566.1|2752907_2753459_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|2753483_2754119_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_000361663.1|2754122_2755484_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_001048530.1|2755494_2756388_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000995703.1|2756503_2757352_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000684022.1|2757390_2758308_-	oxidoreductase	NA	NA	NA	NA	NA
WP_001276370.1|2758329_2759526_-	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_001022463.1|2759641_2760568_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
WP_001196290.1|2760605_2760866_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_000986043.1|2760977_2761358_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000818972.1|2761357_2762089_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000399380.1|2762100_2762829_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102232.1|2762840_2763746_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|2763742_2764423_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002559.1|2764696_2765671_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|2765687_2767487_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_010989047.1|2767891_2769385_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
WP_001542312.1|2769827_2769965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001526383.1|2770677_2770797_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001738443.1|2771549_2771762_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
WP_031620636.1|2771895_2772096_+	phage virulence factor PagK family protein	NA	NA	NA	NA	NA
WP_000143154.1|2772192_2772771_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
WP_000593433.1|2772760_2773585_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
WP_075146502.1|2773581_2775954_-|tail	prophage tail fiber N-terminal domain-containing protein	tail	A0A0K2FIZ6	Escherichia_phage	65.4	1.1e-90
WP_000178853.1|2776007_2776250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053299762.1|2776288_2779651_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.9	0.0e+00
WP_000246126.1|2779712_2780360_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
WP_000662739.1|2780257_2780995_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
WP_001152689.1|2781001_2781700_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
WP_000447369.1|2781709_2782039_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
WP_075146503.1|2782041_2785137_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.4	2.1e-280
WP_010989052.1|2785108_2785447_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2785443_2785839_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2785889_2786636_-	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2786643_2787045_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000817263.1|2787153_2788284_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
WP_001534814.1|2788332_2788911_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.7	1.7e-82
WP_000083294.1|2788938_2789322_-|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
WP_000201486.1|2789332_2789692_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522566.1|2789749_2790778_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2790832_2791180_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_075146504.1|2791192_2792689_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.4	6.2e-97
WP_000831821.1|2792678_2794259_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_000201415.1|2794255_2794459_-	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000623091.1|2794442_2796374_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
WP_001102153.1|2796345_2796891_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669690.1|2797177_2797579_+	PPC domain-containing protein	NA	NA	NA	NA	NA
WP_001533543.1|2797814_2798267_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_015701345.1|2798284_2798737_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
WP_001574216.1|2798720_2799050_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110783.1|2799325_2800012_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
WP_000657897.1|2800226_2800415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000211410.1|2800921_2801485_-	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_001097241.1|2801757_2802435_-	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
WP_000801757.1|2802431_2802572_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_001096550.1|2802568_2803180_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
WP_000929791.1|2803388_2803991_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_014343878.1|2804025_2804274_-	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001217669.1|2804390_2804624_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_000877757.1|2804866_2805499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664368.1|2805606_2806305_-	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
WP_000801764.1|2806318_2807014_-	hypothetical protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
WP_000024044.1|2807010_2807895_-	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
WP_010835408.1|2807986_2808361_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_000643689.1|2808320_2808563_-	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
WP_000660736.1|2808662_2809058_+	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
WP_001111772.1|2809116_2809956_+	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
WP_000356948.1|2809948_2810335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000950426.1|2810334_2810997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000917562.1|2811453_2811612_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
WP_001539619.1|2811633_2811984_+	hypothetical protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
WP_075146505.1|2812110_2815038_+	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
WP_077248255.1|2815000_2816158_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
WP_001237031.1|2816199_2816439_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_001670787.1|2816479_2816764_+	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
WP_001007939.1|2816741_2817971_-|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.4	2.9e-233
WP_000589087.1|2818468_2818948_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812017.1|2818944_2819901_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_001168374.1|2819900_2820551_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|2820582_2821158_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_014344135.1|2821154_2821319_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000989177.1|2821582_2823205_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083343.1|2823189_2823927_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2824057_2825392_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001526875.1|2825409_2826309_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023139269.1|2826411_2826999_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2827060_2827444_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|2827762_2828452_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|2828567_2829605_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
2837509:2837525	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 9
NZ_CP013702	Salmonella enterica subsp. enterica serovar Typhimurium strain RM10961 chromosome, complete genome	4856460	4420654	4441074	4856460	plate,tail,holin	Burkholderia_phage(45.0%)	26	NA	NA
WP_000587738.1|4420654_4421383_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
WP_010989092.1|4421579_4421870_-	membrane protein	NA	NA	NA	NA	NA
WP_000084331.1|4422118_4422574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001526208.1|4422570_4423176_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_023139145.1|4423180_4424926_-|tail	tail fiber protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	5.5e-52
WP_000359500.1|4424928_4425561_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
WP_000951736.1|4425553_4426669_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
WP_001093501.1|4426659_4427019_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4427182_4428730_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_023139146.1|4428729_4429659_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.4	2.0e-149
WP_000593182.1|4429655_4430018_-	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
WP_023139147.1|4430345_4431068_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
WP_000818154.1|4431077_4432121_-	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
WP_001269716.1|4432108_4432318_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271423.1|4432317_4433271_-	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262500.1|4433270_4435625_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
WP_001185654.1|4435721_4435850_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003642.1|4435809_4436127_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4436178_4436703_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001741803.1|4436702_4438130_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.7	1.5e-193
WP_000875314.1|4438119_4438317_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4438313_4438769_-	Gp37 family protein	NA	NA	NA	NA	NA
WP_000777266.1|4438928_4439243_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270441.1|4439255_4439861_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
WP_001226442.1|4439863_4440151_-|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
WP_000615248.1|4440726_4441074_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
