assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001922265.1_ASM192226v1	NZ_CP017291	Corynebacterium pseudotuberculosis strain MEX30 chromosome, complete genome	1	22345-22557	1,1,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	Type I-E	GGAACTACCTCCGCATACGCGGAGAAAAGT,CCTCCGCATACGCGGAGAAAAGT,GGAACTACCTCCGCATACGCGGAGAAAAG	30,23,29	0	0	NA	NA	I-C,I-E,II-B:NA:I-C,I-E,II-B	3,3,2	3	TypeI-E	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	NA|224aa|up_4|NZ_CP017291.1_17640_18312_-,NA|64aa|up_1|NZ_CP017291.1_20719_20911_+,NA|101aa|up_0|NZ_CP017291.1_21712_22015_-,NA	NA|260aa|up_9|NZ_CP017291.1_12426_13206_+	pfam14256, YwiC, YwiC-like protein	NA|172aa|up_8|NZ_CP017291.1_13532_14048_+	smart00112, CA, Cadherin repeats	NA|334aa|up_7|NZ_CP017291.1_14680_15682_+	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|362aa|up_6|NZ_CP017291.1_15678_16764_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|258aa|up_5|NZ_CP017291.1_16765_17539_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|224aa|up_4|NZ_CP017291.1_17640_18312_-	NA	NA|179aa|up_3|NZ_CP017291.1_18389_18926_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|257aa|up_2|NZ_CP017291.1_18987_19758_+	pfam01694, Rhomboid, Rhomboid family	NA|64aa|up_1|NZ_CP017291.1_20719_20911_+	NA	NA|101aa|up_0|NZ_CP017291.1_21712_22015_-	NA	cas2|124aa|down_0|NZ_CP017291.1_22574_22946_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|318aa|down_1|NZ_CP017291.1_22945_23899_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas3|896aa|down_2|NZ_CP017291.1_23901_26589_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas6e|237aa|down_3|NZ_CP017291.1_26609_27320_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas8e|538aa|down_4|NZ_CP017291.1_27530_29144_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|198aa|down_5|NZ_CP017291.1_29140_29734_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|356aa|down_6|NZ_CP017291.1_29733_30801_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|231aa|down_7|NZ_CP017291.1_30812_31505_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|347aa|down_8|NZ_CP017291.1_31579_32620_-	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|308aa|down_9|NZ_CP017291.1_33027_33951_+	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins
GCF_001922265.1_ASM192226v1	NZ_CP017291	Corynebacterium pseudotuberculosis strain MEX30 chromosome, complete genome	2	27371-27442	2	CRISPRCasFinder	no	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	Type I-E	TTCCTCGCGTCCTGCGGGGGTAG	23	0	0	NA	NA	NA	1	1	TypeI-E	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	NA|224aa|up_8|NZ_CP017291.1_17640_18312_-,NA|64aa|up_5|NZ_CP017291.1_20719_20911_+,NA|101aa|up_4|NZ_CP017291.1_21712_22015_-,NA	NA|258aa|up_9|NZ_CP017291.1_16765_17539_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|224aa|up_8|NZ_CP017291.1_17640_18312_-	NA	NA|179aa|up_7|NZ_CP017291.1_18389_18926_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|257aa|up_6|NZ_CP017291.1_18987_19758_+	pfam01694, Rhomboid, Rhomboid family	NA|64aa|up_5|NZ_CP017291.1_20719_20911_+	NA	NA|101aa|up_4|NZ_CP017291.1_21712_22015_-	NA	cas2|124aa|up_3|NZ_CP017291.1_22574_22946_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|318aa|up_2|NZ_CP017291.1_22945_23899_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas3|896aa|up_1|NZ_CP017291.1_23901_26589_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas6e|237aa|up_0|NZ_CP017291.1_26609_27320_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas8e|538aa|down_0|NZ_CP017291.1_27530_29144_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|198aa|down_1|NZ_CP017291.1_29140_29734_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|356aa|down_2|NZ_CP017291.1_29733_30801_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|231aa|down_3|NZ_CP017291.1_30812_31505_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|347aa|down_4|NZ_CP017291.1_31579_32620_-	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|308aa|down_5|NZ_CP017291.1_33027_33951_+	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins	NA|289aa|down_6|NZ_CP017291.1_34003_34870_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|329aa|down_7|NZ_CP017291.1_34878_35865_-	PRK10440, PRK10440, iron-enterobactin ABC transporter permease	NA|356aa|down_8|NZ_CP017291.1_35864_36932_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|351aa|down_9|NZ_CP017291.1_36978_38031_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD
GCF_001922265.1_ASM192226v1	NZ_CP017291	Corynebacterium pseudotuberculosis strain MEX30 chromosome, complete genome	3	642421-642506	3	CRISPRCasFinder	no		cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	Orphan	TGTTGAGAACTCAATAGTGTGCCA	24	1	2	642445-642482|642445-642482	NZ_CP017291.1_642384-642421|NZ_CP017291.1_1059963-1060000	NA	1	1	Orphan	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	NA|126aa|up_5|NZ_CP017291.1_635851_636229_-,NA|133aa|down_0|NZ_CP017291.1_642545_642944_-	NA|164aa|up_9|NZ_CP017291.1_633509_634001_+	pfam01668, SmpB, SmpB protein	NA|131aa|up_8|NZ_CP017291.1_634567_634960_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|82aa|up_7|NZ_CP017291.1_634956_635202_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|137aa|up_6|NZ_CP017291.1_635089_635500_-	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain	NA|126aa|up_5|NZ_CP017291.1_635851_636229_-	NA	NA|241aa|up_4|NZ_CP017291.1_636923_637646_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|331aa|up_3|NZ_CP017291.1_638253_639246_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|322aa|up_2|NZ_CP017291.1_639362_640328_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|353aa|up_1|NZ_CP017291.1_640320_641379_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|252aa|up_0|NZ_CP017291.1_641375_642131_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|133aa|down_0|NZ_CP017291.1_642545_642944_-	NA	NA|390aa|down_1|NZ_CP017291.1_648316_649486_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|214aa|down_2|NZ_CP017291.1_649485_650127_-	pfam11580, DUF3239, Protein of unknown function (DUF3239)	NA|550aa|down_3|NZ_CP017291.1_650193_651843_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|833aa|down_4|NZ_CP017291.1_651957_654456_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|208aa|down_5|NZ_CP017291.1_654696_655320_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|131aa|down_6|NZ_CP017291.1_656143_656536_+	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|176aa|down_7|NZ_CP017291.1_656604_657132_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|314aa|down_8|NZ_CP017291.1_657160_658102_-	pfam05096, Glu_cyclase_2, Glutamine cyclotransferase	NA|245aa|down_9|NZ_CP017291.1_658158_658893_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_001922265.1_ASM192226v1	NZ_CP017291	Corynebacterium pseudotuberculosis strain MEX30 chromosome, complete genome	4	1843040-1843129	4	CRISPRCasFinder	no		cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	Orphan	CCTTTTCTCCGCGCACGCGGAGGTAGTTC	29	0	0	NA	NA	I-C,I-E,II-B	1	1	Orphan	cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	NA,NA|64aa|down_0|NZ_CP017291.1_1843635_1843827_+,NA|82aa|down_1|NZ_CP017291.1_1844178_1844424_+,NA|48aa|down_3|NZ_CP017291.1_1847055_1847199_+,NA|98aa|down_4|NZ_CP017291.1_1847326_1847620_+,NA|58aa|down_5|NZ_CP017291.1_1848109_1848283_+,NA|75aa|down_8|NZ_CP017291.1_1849642_1849867_+,NA|277aa|down_9|NZ_CP017291.1_1850007_1850838_+	NA|208aa|up_9|NZ_CP017291.1_1832297_1832921_-	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|245aa|up_8|NZ_CP017291.1_1832917_1833652_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|256aa|up_7|NZ_CP017291.1_1833690_1834458_-	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|298aa|up_6|NZ_CP017291.1_1834530_1835424_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|273aa|up_5|NZ_CP017291.1_1835497_1836316_-	pfam01694, Rhomboid, Rhomboid family	NA|179aa|up_4|NZ_CP017291.1_1836403_1836940_-	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|127aa|up_3|NZ_CP017291.1_1837034_1837415_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|453aa|up_2|NZ_CP017291.1_1837539_1838898_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|166aa|up_1|NZ_CP017291.1_1840968_1841466_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|428aa|up_0|NZ_CP017291.1_1841462_1842746_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|64aa|down_0|NZ_CP017291.1_1843635_1843827_+	NA	NA|82aa|down_1|NZ_CP017291.1_1844178_1844424_+	NA	NA|88aa|down_2|NZ_CP017291.1_1846774_1847038_-	cd02042, ParAB_family, partition proteins ParAB family	NA|48aa|down_3|NZ_CP017291.1_1847055_1847199_+	NA	NA|98aa|down_4|NZ_CP017291.1_1847326_1847620_+	NA	NA|58aa|down_5|NZ_CP017291.1_1848109_1848283_+	NA	NA|106aa|down_6|NZ_CP017291.1_1848921_1849239_-	pfam04796, RepA_C, Plasmid encoded RepA protein	NA|79aa|down_7|NZ_CP017291.1_1849256_1849493_-	pfam04796, RepA_C, Plasmid encoded RepA protein	NA|75aa|down_8|NZ_CP017291.1_1849642_1849867_+	NA	NA|277aa|down_9|NZ_CP017291.1_1850007_1850838_+	NA
