assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001931615.1_ASM193161v1	NZ_CP016412	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454, complete genome	1	1229509-1231125	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	25,26,26	26	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,c2c9_V-U4,cas14j	NA,NA|73aa|down_4|NZ_CP016412.1_1236361_1236580_-	NA|381aa|up_9|NZ_CP016412.1_1215304_1216447_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP016412.1_1216490_1219247_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP016412.1_1219304_1220600_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP016412.1_1220651_1222886_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP016412.1_1222969_1223326_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP016412.1_1223291_1223588_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP016412.1_1224358_1225159_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP016412.1_1225386_1227024_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP016412.1_1227106_1228405_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP016412.1_1228540_1229212_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP016412.1_1231222_1232020_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP016412.1_1232107_1232470_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP016412.1_1232893_1234693_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP016412.1_1234692_1236405_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|down_4|NZ_CP016412.1_1236361_1236580_-	NA	NA|245aa|down_5|NZ_CP016412.1_1236506_1237241_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|NZ_CP016412.1_1237453_1238407_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_7|NZ_CP016412.1_1238850_1241514_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_8|NZ_CP016412.1_1241525_1243082_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_9|NZ_CP016412.1_1243078_1243639_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCF_001931615.1_ASM193161v1	NZ_CP016412	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454, complete genome	2	1247407-1249303	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCNAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	30,30,27	30	TypeI-E	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,c2c9_V-U4,cas14j	NA,NA	NA|245aa|up_9|NZ_CP016412.1_1236506_1237241_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP016412.1_1237453_1238407_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP016412.1_1238850_1241514_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP016412.1_1241525_1243082_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP016412.1_1243078_1243639_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP016412.1_1243652_1244711_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP016412.1_1244721_1245468_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP016412.1_1245449_1246100_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP016412.1_1246096_1247017_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP016412.1_1247016_1247310_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP016412.1_1249317_1250364_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP016412.1_1250614_1251523_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP016412.1_1251532_1252972_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP016412.1_1252958_1253564_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP016412.1_1253581_1253938_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP016412.1_1254128_1254440_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP016412.1_1254458_1255169_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP016412.1_1255168_1255648_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP016412.1_1255644_1256694_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP016412.1_1256674_1257436_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001931615.1_ASM193161v1	NZ_CP016412	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454, complete genome	3	3335467-3335574	3	CRISPRCasFinder	no		cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh	Orphan	TGTTCATCGGATGGTTTATCGCATGGTTCATCGGGTGAA	39	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,DEDDh,c2c9_V-U4,cas14j	NA|79aa|up_9|NZ_CP016412.1_3331220_3331457_-,NA|134aa|up_7|NZ_CP016412.1_3331618_3332020_-,NA|67aa|up_4|NZ_CP016412.1_3332631_3332832_-,NA|94aa|up_3|NZ_CP016412.1_3332834_3333116_-,NA|70aa|up_2|NZ_CP016412.1_3333127_3333337_-,NA|87aa|down_0|NZ_CP016412.1_3335986_3336247_-,NA|121aa|down_6|NZ_CP016412.1_3339689_3340052_+,NA|148aa|down_7|NZ_CP016412.1_3340068_3340512_+	NA|79aa|up_9|NZ_CP016412.1_3331220_3331457_-	NA	NA|59aa|up_8|NZ_CP016412.1_3331449_3331626_-	pfam05810, NinF, NinF protein	NA|134aa|up_7|NZ_CP016412.1_3331618_3332020_-	NA	NA|59aa|up_6|NZ_CP016412.1_3332022_3332199_-	pfam05322, NinE, NINE Protein	NA|141aa|up_5|NZ_CP016412.1_3332206_3332629_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|67aa|up_4|NZ_CP016412.1_3332631_3332832_-	NA	NA|94aa|up_3|NZ_CP016412.1_3332834_3333116_-	NA	NA|70aa|up_2|NZ_CP016412.1_3333127_3333337_-	NA	NA|91aa|up_1|NZ_CP016412.1_3333346_3333619_-	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|459aa|up_0|NZ_CP016412.1_3333690_3335067_-	TIGR00665, DnaB, replicative DNA helicase	NA|87aa|down_0|NZ_CP016412.1_3335986_3336247_-	NA	NA|97aa|down_1|NZ_CP016412.1_3336268_3336559_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|76aa|down_2|NZ_CP016412.1_3336695_3336923_-	pfam13384, HTH_23, Homeodomain-like domain	NA|237aa|down_3|NZ_CP016412.1_3337000_3337711_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|340aa|down_4|NZ_CP016412.1_3337946_3338966_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|70aa|down_5|NZ_CP016412.1_3339112_3339322_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|121aa|down_6|NZ_CP016412.1_3339689_3340052_+	NA	NA|148aa|down_7|NZ_CP016412.1_3340068_3340512_+	NA	NA|211aa|down_8|NZ_CP016412.1_3340600_3341233_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|58aa|down_9|NZ_CP016412.1_3341426_3341600_+	pfam02061, Lambda_CIII, Lambda Phage CIII
