assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001932595.1_ASM193259v1	NZ_CP013757	Piscirickettsia salmonis strain AY6492A, complete genome	1	614658-614778	1	CRISPRCasFinder	no		RT,csa3,DEDDh,DinG,cas3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|158aa|up_9|NZ_CP013757.1_605770_606244_-,NA|71aa|up_5|NZ_CP013757.1_611645_611858_+,NA|137aa|up_2|NZ_CP013757.1_613136_613547_+,NA|141aa|up_1|NZ_CP013757.1_613790_614213_-,NA|47aa|up_0|NZ_CP013757.1_614245_614386_+,NA	NA|158aa|up_9|NZ_CP013757.1_605770_606244_-	NA	NA|420aa|up_8|NZ_CP013757.1_606376_607636_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_7|NZ_CP013757.1_608091_610173_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_6|NZ_CP013757.1_610476_611487_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|71aa|up_5|NZ_CP013757.1_611645_611858_+	NA	NA|122aa|up_4|NZ_CP013757.1_611919_612285_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_3|NZ_CP013757.1_612230_612806_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|137aa|up_2|NZ_CP013757.1_613136_613547_+	NA	NA|141aa|up_1|NZ_CP013757.1_613790_614213_-	NA	NA|47aa|up_0|NZ_CP013757.1_614245_614386_+	NA	NA|296aa|down_0|NZ_CP013757.1_616155_617042_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|132aa|down_1|NZ_CP013757.1_617725_618121_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_2|NZ_CP013757.1_618117_618912_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_3|NZ_CP013757.1_619090_619816_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_4|NZ_CP013757.1_620061_621249_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|243aa|down_5|NZ_CP013757.1_621580_622309_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|228aa|down_6|NZ_CP013757.1_622790_623474_+	pfam02661, Fic, Fic/DOC family	NA|195aa|down_7|NZ_CP013757.1_623477_624062_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|243aa|down_8|NZ_CP013757.1_624218_624947_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|296aa|down_9|NZ_CP013757.1_625332_626219_+	pfam13358, DDE_3, DDE superfamily endonuclease
GCF_001932595.1_ASM193259v1	NZ_CP013757	Piscirickettsia salmonis strain AY6492A, complete genome	2	779602-779731	2	CRISPRCasFinder	no		RT,csa3,DEDDh,DinG,cas3	Orphan	TTAAAAAATACAATAAAGAAAAACGATGCCTTCTCCTTACAGTTAT	46	1	41	779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685|779648-779685	NZ_CP013757.1_9440-9477|NZ_CP013757.1_88647-88610|NZ_CP013757.1_258570-258533|NZ_CP013757.1_280714-280677|NZ_CP013757.1_345983-346020|NZ_CP013757.1_349283-349246|NZ_CP013757.1_611857-611894|NZ_CP013757.1_681609-681646|NZ_CP013757.1_843454-843491|NZ_CP013757.1_876116-876079|NZ_CP013757.1_906942-906979|NZ_CP013757.1_949152-949189|NZ_CP013757.1_953824-953861|NZ_CP013757.1_1074194-1074157|NZ_CP013757.1_1084692-1084729|NZ_CP013757.1_1255840-1255803|NZ_CP013757.1_1259203-1259240|NZ_CP013757.1_1268957-1268994|NZ_CP013757.1_1466840-1466877|NZ_CP013757.1_1556970-1556933|NZ_CP013757.1_1643923-1643886|NZ_CP013757.1_1659950-1659913|NZ_CP013757.1_1777855-1777818|NZ_CP013757.1_1824401-1824438|NZ_CP013757.1_1881230-1881267|NZ_CP013757.1_2006388-2006351|NZ_CP013757.1_2022963-2023000|NZ_CP013757.1_2113823-2113786|NZ_CP013757.1_2184301-2184264|NZ_CP013757.1_2224819-2224782|NZ_CP013757.1_2571110-2571073|NZ_CP013757.1_2619963-2619926|NZ_CP013757.1_2622040-2622077|NZ_CP013757.1_2654013-2654050|NZ_CP013757.1_2809417-2809454|NZ_CP013757.1_2833551-2833588|NZ_CP013757.1_2875403-2875440|NZ_CP013757.1_528342-528379|NZ_CP013761.1_92541-92504|NZ_CP013761.1_103207-103244|NZ_CP013761.1_42515-42552	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|192aa|up_5|NZ_CP013757.1_775327_775903_-,NA|128aa|up_4|NZ_CP013757.1_776175_776559_-,NA|263aa|up_3|NZ_CP013757.1_776763_777552_-,NA|99aa|up_2|NZ_CP013757.1_777732_778029_-,NA|233aa|up_1|NZ_CP013757.1_778045_778744_-,NA|97aa|up_0|NZ_CP013757.1_778781_779072_-,NA|105aa|down_1|NZ_CP013757.1_780637_780952_+,NA|65aa|down_5|NZ_CP013757.1_784832_785027_+,NA|73aa|down_8|NZ_CP013757.1_787901_788120_+,NA|485aa|down_9|NZ_CP013757.1_788982_790437_+	NA|262aa|up_9|NZ_CP013757.1_771083_771869_-	TIGR03545, TIGR03545, TIGR03545 family protein	NA|315aa|up_8|NZ_CP013757.1_772173_773118_+	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|395aa|up_7|NZ_CP013757.1_773136_774321_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|278aa|up_6|NZ_CP013757.1_774436_775270_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|192aa|up_5|NZ_CP013757.1_775327_775903_-	NA	NA|128aa|up_4|NZ_CP013757.1_776175_776559_-	NA	NA|263aa|up_3|NZ_CP013757.1_776763_777552_-	NA	NA|99aa|up_2|NZ_CP013757.1_777732_778029_-	NA	NA|233aa|up_1|NZ_CP013757.1_778045_778744_-	NA	NA|97aa|up_0|NZ_CP013757.1_778781_779072_-	NA	NA|192aa|down_0|NZ_CP013757.1_780021_780597_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|down_1|NZ_CP013757.1_780637_780952_+	NA	NA|192aa|down_2|NZ_CP013757.1_780897_781473_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|468aa|down_3|NZ_CP013757.1_781523_782927_-	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|354aa|down_4|NZ_CP013757.1_783088_784150_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|65aa|down_5|NZ_CP013757.1_784832_785027_+	NA	NA|329aa|down_6|NZ_CP013757.1_785164_786151_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|85aa|down_7|NZ_CP013757.1_786873_787128_-	PRK08116, PRK08116, hypothetical protein; Validated	NA|73aa|down_8|NZ_CP013757.1_787901_788120_+	NA	NA|485aa|down_9|NZ_CP013757.1_788982_790437_+	NA
GCF_001932595.1_ASM193259v1	NZ_CP013757	Piscirickettsia salmonis strain AY6492A, complete genome	3	2480500-2480606	3	CRISPRCasFinder	no		RT,csa3,DEDDh,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|154aa|up_7|NZ_CP013757.1_2469317_2469779_+,NA|53aa|up_5|NZ_CP013757.1_2472199_2472358_-,NA|62aa|up_4|NZ_CP013757.1_2472714_2472900_+,NA|105aa|up_2|NZ_CP013757.1_2477596_2477911_-,NA|87aa|up_1|NZ_CP013757.1_2478168_2478429_+,NA|86aa|down_0|NZ_CP013757.1_2481310_2481568_+,NA|204aa|down_4|NZ_CP013757.1_2485565_2486177_+,NA|87aa|down_5|NZ_CP013757.1_2486361_2486622_+,NA|67aa|down_7|NZ_CP013757.1_2488171_2488372_-	NA|602aa|up_9|NZ_CP013757.1_2466061_2467867_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_8|NZ_CP013757.1_2468350_2469148_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_7|NZ_CP013757.1_2469317_2469779_+	NA	NA|652aa|up_6|NZ_CP013757.1_2470077_2472033_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|53aa|up_5|NZ_CP013757.1_2472199_2472358_-	NA	NA|62aa|up_4|NZ_CP013757.1_2472714_2472900_+	NA	NA|330aa|up_3|NZ_CP013757.1_2473233_2474223_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP013757.1_2477596_2477911_-	NA	NA|87aa|up_1|NZ_CP013757.1_2478168_2478429_+	NA	NA|163aa|up_0|NZ_CP013757.1_2478448_2478937_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP013757.1_2481310_2481568_+	NA	NA|336aa|down_1|NZ_CP013757.1_2481567_2482575_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP013757.1_2482599_2484165_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP013757.1_2484371_2485199_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP013757.1_2485565_2486177_+	NA	NA|87aa|down_5|NZ_CP013757.1_2486361_2486622_+	NA	NA|318aa|down_6|NZ_CP013757.1_2486795_2487749_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP013757.1_2488171_2488372_-	NA	NA|269aa|down_8|NZ_CP013757.1_2488746_2489553_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP013757.1_2489658_2490630_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_001932595.1_ASM193259v1	NZ_CP013761	Piscirickettsia salmonis strain AY6492A plasmid p4PS1, complete sequence	1	110035-110546	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,DEDDh,DinG,cas3	NA|86aa|up_9|NZ_CP013761.1_101975_102233_-,NA|49aa|up_3|NZ_CP013761.1_105721_105868_+,NA|111aa|down_4|NZ_CP013761.1_115774_116107_-,NA|354aa|down_8|NZ_CP013761.1_118518_119580_+	NA|86aa|up_9|NZ_CP013761.1_101975_102233_-	NA	NA|336aa|up_8|NZ_CP013761.1_102301_103309_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|122aa|up_7|NZ_CP013761.1_103269_103635_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_6|NZ_CP013761.1_103580_104156_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|85aa|up_5|NZ_CP013761.1_104159_104414_-	pfam01527, HTH_Tnp_1, Transposase	RT|376aa|up_4|NZ_CP013761.1_104373_105501_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP013761.1_105721_105868_+	NA	NA|272aa|up_2|NZ_CP013761.1_106197_107013_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP013761.1_107258_107849_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP013761.1_108803_109823_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP013761.1_111034_111763_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP013761.1_111966_114543_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|52aa|down_2|NZ_CP013761.1_114837_114993_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|243aa|down_3|NZ_CP013761.1_115016_115745_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|111aa|down_4|NZ_CP013761.1_115774_116107_-	NA	NA|114aa|down_5|NZ_CP013761.1_116177_116519_-	COG5323, COG5323, Uncharacterized conserved protein [Function unknown]	NA|243aa|down_6|NZ_CP013761.1_116674_117403_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|189aa|down_7|NZ_CP013761.1_117609_118176_+	cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase	NA|354aa|down_8|NZ_CP013761.1_118518_119580_+	NA	NA|361aa|down_9|NZ_CP013761.1_119609_120692_-	pfam00665, rve, Integrase core domain
