assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001932935.1_ASM193293v1	NZ_CP013814	Piscirickettsia salmonis strain AY3864B plasmid p3PS11, complete sequence	1	10747-10886	1	PILER-CR	no			Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,DinG,csa3	NA|52aa|up_6|NZ_CP013814.1_6497_6653_-,NA|166aa|up_5|NZ_CP013814.1_6713_7211_-,NA|65aa|down_3|NZ_CP013814.1_13824_14019_-	NA|311aa|up_9|NZ_CP013814.1_2990_3923_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|214aa|up_8|NZ_CP013814.1_4124_4766_+	pfam00302, CAT, Chloramphenicol acetyltransferase	NA|311aa|up_7|NZ_CP013814.1_5439_6372_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|52aa|up_6|NZ_CP013814.1_6497_6653_-	NA	NA|166aa|up_5|NZ_CP013814.1_6713_7211_-	NA	NA|263aa|up_4|NZ_CP013814.1_7286_8075_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_3|NZ_CP013814.1_8132_8657_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|up_2|NZ_CP013814.1_8979_9516_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP013814.1_9630_9957_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP013814.1_10144_10384_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|406aa|down_0|NZ_CP013814.1_11336_12554_-	cd16398, KorB_N_like, ParB-like partition protein of low copy number plasmid RK2, N-terminal domain and related domains	NA|251aa|down_1|NZ_CP013814.1_12553_13306_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|105aa|down_2|NZ_CP013814.1_13309_13624_-	pfam16509, KORA, TrfB plasmid transcriptional repressor	NA|65aa|down_3|NZ_CP013814.1_13824_14019_-	NA	NA|332aa|down_4|NZ_CP013814.1_14392_15388_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|141aa|down_5|NZ_CP013814.1_15497_15920_-	pfam03230, Antirestrict, Antirestriction protein	NA|455aa|down_6|NZ_CP013814.1_16456_17821_-	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid	NA|104aa|down_7|NZ_CP013814.1_18005_18317_-	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	NA|247aa|down_8|NZ_CP013814.1_18722_19463_+	pfam05857, TraX, TraX protein	NA|216aa|down_9|NZ_CP013814.1_19462_20110_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme
GCF_001932935.1_ASM193293v1	NZ_CP013811	Piscirickettsia salmonis strain AY3864B, complete genome	1	544569-544664	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3	Orphan	CAGAGTGTCCTGAAGCCCCTTGAG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3	NA|61aa|up_9|NZ_CP013811.1_533997_534180_-,NA|436aa|up_8|NZ_CP013811.1_534728_536036_+,NA|126aa|up_7|NZ_CP013811.1_536495_536873_-,NA|47aa|up_4|NZ_CP013811.1_538830_538971_-,NA|66aa|up_3|NZ_CP013811.1_539171_539369_+,NA|307aa|down_9|NZ_CP013811.1_561267_562188_-	NA|61aa|up_9|NZ_CP013811.1_533997_534180_-	NA	NA|436aa|up_8|NZ_CP013811.1_534728_536036_+	NA	NA|126aa|up_7|NZ_CP013811.1_536495_536873_-	NA	NA|134aa|up_6|NZ_CP013811.1_537017_537419_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|260aa|up_5|NZ_CP013811.1_537983_538763_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|47aa|up_4|NZ_CP013811.1_538830_538971_-	NA	NA|66aa|up_3|NZ_CP013811.1_539171_539369_+	NA	NA|200aa|up_2|NZ_CP013811.1_539506_540106_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|491aa|up_1|NZ_CP013811.1_540288_541761_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|582aa|up_0|NZ_CP013811.1_542163_543909_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|648aa|down_0|NZ_CP013811.1_545722_547666_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|468aa|down_1|NZ_CP013811.1_547811_549215_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|210aa|down_2|NZ_CP013811.1_549334_549964_-	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains	NA|240aa|down_3|NZ_CP013811.1_550202_550922_-	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|1180aa|down_4|NZ_CP013811.1_551035_554575_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|277aa|down_5|NZ_CP013811.1_554641_555472_+	pfam04354, ZipA_C, ZipA, C-terminal FtsZ-binding domain	NA|680aa|down_6|NZ_CP013811.1_555458_557498_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|352aa|down_7|NZ_CP013811.1_557513_558569_+	PRK11778, PRK11778, putative inner membrane peptidase; Provisional	NA|177aa|down_8|NZ_CP013811.1_558579_559110_+	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|307aa|down_9|NZ_CP013811.1_561267_562188_-	NA
GCF_001932935.1_ASM193293v1	NZ_CP013811	Piscirickettsia salmonis strain AY3864B, complete genome	2	1102871-1102980	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3	Orphan	TATCTTTAAGTTGCTCCCAATCTCCT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3	NA|55aa|up_7|NZ_CP013811.1_1096171_1096336_-,NA|55aa|up_5|NZ_CP013811.1_1097503_1097668_-,NA|62aa|up_4|NZ_CP013811.1_1097847_1098033_-,NA|54aa|down_0|NZ_CP013811.1_1103677_1103839_+,NA|70aa|down_1|NZ_CP013811.1_1104373_1104583_-,NA|59aa|down_4|NZ_CP013811.1_1108467_1108644_+,NA|219aa|down_6|NZ_CP013811.1_1109488_1110145_+,NA|762aa|down_7|NZ_CP013811.1_1110133_1112419_-,NA|120aa|down_8|NZ_CP013811.1_1112692_1113052_-	NA|307aa|up_9|NZ_CP013811.1_1094058_1094979_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|292aa|up_8|NZ_CP013811.1_1095294_1096170_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|55aa|up_7|NZ_CP013811.1_1096171_1096336_-	NA	NA|292aa|up_6|NZ_CP013811.1_1096626_1097502_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|55aa|up_5|NZ_CP013811.1_1097503_1097668_-	NA	NA|62aa|up_4|NZ_CP013811.1_1097847_1098033_-	NA	NA|325aa|up_3|NZ_CP013811.1_1098076_1099051_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|434aa|up_2|NZ_CP013811.1_1099047_1100349_-	TIGR00361, Recombination_protein_2, DNA internalization-related competence protein ComEC/Rec2	NA|179aa|up_1|NZ_CP013811.1_1100366_1100903_+	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|302aa|up_0|NZ_CP013811.1_1101365_1102271_-	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional	NA|54aa|down_0|NZ_CP013811.1_1103677_1103839_+	NA	NA|70aa|down_1|NZ_CP013811.1_1104373_1104583_-	NA	NA|438aa|down_2|NZ_CP013811.1_1105698_1107012_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|382aa|down_3|NZ_CP013811.1_1107247_1108393_+	cd06234, M14_PaCCP-like, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar to Pseudomonas aerugnosa CCP (PaCCP)	NA|59aa|down_4|NZ_CP013811.1_1108467_1108644_+	NA	NA|211aa|down_5|NZ_CP013811.1_1108679_1109312_-	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]	NA|219aa|down_6|NZ_CP013811.1_1109488_1110145_+	NA	NA|762aa|down_7|NZ_CP013811.1_1110133_1112419_-	NA	NA|120aa|down_8|NZ_CP013811.1_1112692_1113052_-	NA	NA|212aa|down_9|NZ_CP013811.1_1113333_1113969_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]
