assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001936215.1_ASM193621v1	NZ_CP018363	Mycobacterium avium subsp. hominissuis strain H87 chromosome, complete genome	1	54205-54289	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	CGCGCGTTTTACGCGCTCATCGCCCGGGGC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA,NA|114aa|down_2|NZ_CP018363.1_57144_57486_-	NA|461aa|up_9|NZ_CP018363.1_45610_46993_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|139aa|up_8|NZ_CP018363.1_47086_47503_-	pfam02467, Whib, Transcription factor WhiB	NA|263aa|up_7|NZ_CP018363.1_47645_48434_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|276aa|up_6|NZ_CP018363.1_48430_49258_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|121aa|up_5|NZ_CP018363.1_49306_49669_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|484aa|up_4|NZ_CP018363.1_49784_51236_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|106aa|up_3|NZ_CP018363.1_51286_51604_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|104aa|up_2|NZ_CP018363.1_51600_51912_+	pfam10904, DUF2694, Protein of unknown function (DUF2694)	NA|551aa|up_1|NZ_CP018363.1_52171_53824_+	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|106aa|up_0|NZ_CP018363.1_53880_54198_+	pfam10921, DUF2710, Protein of unknown function (DUF2710)	NA|424aa|down_0|NZ_CP018363.1_55106_56378_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|202aa|down_1|NZ_CP018363.1_56523_57129_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|114aa|down_2|NZ_CP018363.1_57144_57486_-	NA	NA|355aa|down_3|NZ_CP018363.1_57541_58606_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|970aa|down_4|NZ_CP018363.1_58790_61700_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|224aa|down_5|NZ_CP018363.1_61706_62378_-	PRK08219, PRK08219, SDR family oxidoreductase	NA|168aa|down_6|NZ_CP018363.1_62436_62940_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|249aa|down_7|NZ_CP018363.1_63006_63753_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|603aa|down_8|NZ_CP018363.1_63749_65558_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|247aa|down_9|NZ_CP018363.1_65608_66349_-	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_001936215.1_ASM193621v1	NZ_CP018363	Mycobacterium avium subsp. hominissuis strain H87 chromosome, complete genome	2	2381153-2381251	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	CCGCTCGGGGTCGGGCCGCAACCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA,NA	NA|228aa|up_9|NZ_CP018363.1_2369896_2370580_-	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|254aa|up_8|NZ_CP018363.1_2370792_2371554_+	PRK06500, PRK06500, SDR family oxidoreductase	NA|469aa|up_7|NZ_CP018363.1_2372809_2374216_+	pfam00668, Condensation, Condensation domain	NA|107aa|up_6|NZ_CP018363.1_2374269_2374590_-	pfam00226, DnaJ, DnaJ domain	NA|140aa|up_5|NZ_CP018363.1_2374902_2375322_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|up_4|NZ_CP018363.1_2375434_2375815_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|148aa|up_3|NZ_CP018363.1_2375875_2376319_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|410aa|up_2|NZ_CP018363.1_2376483_2377713_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|392aa|up_1|NZ_CP018363.1_2377709_2378885_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|492aa|up_0|NZ_CP018363.1_2378881_2380357_-	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|104aa|down_0|NZ_CP018363.1_2381396_2381708_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|134aa|down_1|NZ_CP018363.1_2381858_2382260_-	cd08355, TioX_like, Micromonospora sp	NA|281aa|down_2|NZ_CP018363.1_2382213_2383056_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|146aa|down_3|NZ_CP018363.1_2383279_2383717_+	pfam00553, CBM_2, Cellulose binding domain	NA|421aa|down_4|NZ_CP018363.1_2384438_2385700_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|218aa|down_5|NZ_CP018363.1_2386002_2386656_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|295aa|down_6|NZ_CP018363.1_2388637_2389522_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|198aa|down_7|NZ_CP018363.1_2389542_2390136_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|273aa|down_8|NZ_CP018363.1_2390243_2391062_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|388aa|down_9|NZ_CP018363.1_2391064_2392228_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase
GCF_001936215.1_ASM193621v1	NZ_CP018363	Mycobacterium avium subsp. hominissuis strain H87 chromosome, complete genome	3	4041733-4041815	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	ACGGCGCGAGCAAGGAGGCGGACATTGG	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA,NA	NA|452aa|up_9|NZ_CP018363.1_4030784_4032140_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|361aa|up_8|NZ_CP018363.1_4032145_4033228_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|332aa|up_7|NZ_CP018363.1_4033232_4034228_-	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms	NA|217aa|up_6|NZ_CP018363.1_4034349_4035000_+	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|310aa|up_5|NZ_CP018363.1_4035008_4035938_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|595aa|up_4|NZ_CP018363.1_4036105_4037890_-	PRK05855, PRK05855, SDR family oxidoreductase	NA|303aa|up_3|NZ_CP018363.1_4037893_4038802_-	COG3687, COG3687, Predicted metal-dependent hydrolase [General function prediction only]	NA|154aa|up_2|NZ_CP018363.1_4038985_4039447_-	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|374aa|up_1|NZ_CP018363.1_4039558_4040680_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|342aa|up_0|NZ_CP018363.1_4040676_4041702_-	pfam03060, NMO, Nitronate monooxygenase	NA|441aa|down_0|NZ_CP018363.1_4041816_4043139_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|758aa|down_1|NZ_CP018363.1_4043176_4045450_-	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	NA|90aa|down_2|NZ_CP018363.1_4045860_4046130_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|325aa|down_3|NZ_CP018363.1_4046264_4047239_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|235aa|down_4|NZ_CP018363.1_4047352_4048057_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|419aa|down_5|NZ_CP018363.1_4048219_4049476_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|397aa|down_6|NZ_CP018363.1_4049483_4050674_-	PRK08256, PRK08256, lipid-transfer protein; Provisional	NA|294aa|down_7|NZ_CP018363.1_4050764_4051646_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|226aa|down_8|NZ_CP018363.1_4051642_4052320_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|322aa|down_9|NZ_CP018363.1_4052316_4053282_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]
GCF_001936215.1_ASM193621v1	NZ_CP018363	Mycobacterium avium subsp. hominissuis strain H87 chromosome, complete genome	4	5036400-5036544	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	CGCATCGTCGCCGGGCCTAAGCTGG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA,NA	NA|228aa|up_9|NZ_CP018363.1_5026143_5026827_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|410aa|up_8|NZ_CP018363.1_5026982_5028212_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|250aa|up_7|NZ_CP018363.1_5028376_5029126_-	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|169aa|up_6|NZ_CP018363.1_5029177_5029684_-	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|425aa|up_5|NZ_CP018363.1_5029680_5030955_-	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|445aa|up_4|NZ_CP018363.1_5031018_5032353_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|250aa|up_3|NZ_CP018363.1_5032531_5033281_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|447aa|up_2|NZ_CP018363.1_5033264_5034605_-	pfam17964, Big_10, Bacterial Ig domain	NA|373aa|up_1|NZ_CP018363.1_5034677_5035796_-	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|175aa|up_0|NZ_CP018363.1_5035822_5036347_+	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|353aa|down_0|NZ_CP018363.1_5037310_5038369_+	pfam11209, DUF2993, Protein of unknown function (DUF2993)	NA|224aa|down_1|NZ_CP018363.1_5038381_5039053_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|142aa|down_2|NZ_CP018363.1_5039049_5039475_-	pfam10783, DUF2599, Protein of unknown function (DUF2599)	NA|88aa|down_3|NZ_CP018363.1_5039479_5039743_-	pfam10724, DUF2516, Protein of unknown function (DUF2516)	NA|206aa|down_4|NZ_CP018363.1_5039855_5040473_-	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|139aa|down_5|NZ_CP018363.1_5040677_5041094_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|437aa|down_6|NZ_CP018363.1_5041177_5042488_-	COG2733, COG2733, Predicted membrane protein [Function unknown]	NA|236aa|down_7|NZ_CP018363.1_5042623_5043331_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|289aa|down_8|NZ_CP018363.1_5043466_5044333_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|287aa|down_9|NZ_CP018363.1_5044351_5045212_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase
GCF_001936215.1_ASM193621v1	NZ_CP018363	Mycobacterium avium subsp. hominissuis strain H87 chromosome, complete genome	5	5323359-5323490	5	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	CGCTCGCCGAGGGGCAGGCGCTCGC	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA|100aa|up_9|NZ_CP018363.1_5312386_5312686_-,NA|566aa|down_4|NZ_CP018363.1_5328956_5330654_+,NA|99aa|down_9|NZ_CP018363.1_5335294_5335591_-	NA|100aa|up_9|NZ_CP018363.1_5312386_5312686_-	NA	NA|385aa|up_8|NZ_CP018363.1_5313237_5314392_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|326aa|up_7|NZ_CP018363.1_5314407_5315385_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|123aa|up_6|NZ_CP018363.1_5315593_5315962_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|405aa|up_5|NZ_CP018363.1_5316002_5317217_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|310aa|up_4|NZ_CP018363.1_5317464_5318394_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|549aa|up_3|NZ_CP018363.1_5318433_5320080_-	PRK08322, PRK08322, acetolactate synthase large subunit	NA|473aa|up_2|NZ_CP018363.1_5320160_5321579_+	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|312aa|up_1|NZ_CP018363.1_5321645_5322581_-	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|228aa|up_0|NZ_CP018363.1_5322577_5323261_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|570aa|down_0|NZ_CP018363.1_5323497_5325207_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|327aa|down_1|NZ_CP018363.1_5325332_5326313_+	pfam02126, PTE, Phosphotriesterase family	NA|409aa|down_2|NZ_CP018363.1_5326343_5327570_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|419aa|down_3|NZ_CP018363.1_5327691_5328948_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|566aa|down_4|NZ_CP018363.1_5328956_5330654_+	NA	NA|389aa|down_5|NZ_CP018363.1_5330637_5331804_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|256aa|down_6|NZ_CP018363.1_5331885_5332653_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|494aa|down_7|NZ_CP018363.1_5332698_5334180_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|196aa|down_8|NZ_CP018363.1_5334705_5335293_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|99aa|down_9|NZ_CP018363.1_5335294_5335591_-	NA
GCF_001936215.1_ASM193621v1	NZ_CP018363	Mycobacterium avium subsp. hominissuis strain H87 chromosome, complete genome	6	5599542-5599636	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	ACCGCCGAACACCGCCGGCGAGGCCTGCG	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA|87aa|up_9|NZ_CP018363.1_5584728_5584989_+,NA|127aa|up_6|NZ_CP018363.1_5587010_5587391_+,NA|218aa|down_0|NZ_CP018363.1_5600725_5601379_-,NA|170aa|down_3|NZ_CP018363.1_5604017_5604527_-,NA|70aa|down_5|NZ_CP018363.1_5606410_5606620_-,NA|354aa|down_6|NZ_CP018363.1_5606584_5607646_+,NA|87aa|down_7|NZ_CP018363.1_5607744_5608005_+,NA|103aa|down_8|NZ_CP018363.1_5608012_5608321_+	NA|87aa|up_9|NZ_CP018363.1_5584728_5584989_+	NA	NA|219aa|up_8|NZ_CP018363.1_5585004_5585661_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|407aa|up_7|NZ_CP018363.1_5585657_5586878_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|127aa|up_6|NZ_CP018363.1_5587010_5587391_+	NA	NA|953aa|up_5|NZ_CP018363.1_5587383_5590242_+	TIGR00833, Putative_membrane_protein_ActII-3, Transport protein	NA|1404aa|up_4|NZ_CP018363.1_5590228_5594440_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|496aa|up_3|NZ_CP018363.1_5594443_5595931_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|279aa|up_2|NZ_CP018363.1_5595933_5596770_-	COG3953, COG3953, SLT domain proteins [General function prediction only]	NA|262aa|up_1|NZ_CP018363.1_5597050_5597836_-	PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated	NA|420aa|up_0|NZ_CP018363.1_5598080_5599340_-	pfam18645, DUF5631, Family of unknown function (DUF5631)	NA|218aa|down_0|NZ_CP018363.1_5600725_5601379_-	NA	NA|110aa|down_1|NZ_CP018363.1_5601539_5601869_-	pfam10817, DUF2563, Protein of unknown function (DUF2563)	NA|656aa|down_2|NZ_CP018363.1_5602003_5603971_-	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|170aa|down_3|NZ_CP018363.1_5604017_5604527_-	NA	NA|481aa|down_4|NZ_CP018363.1_5604551_5605994_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|70aa|down_5|NZ_CP018363.1_5606410_5606620_-	NA	NA|354aa|down_6|NZ_CP018363.1_5606584_5607646_+	NA	NA|87aa|down_7|NZ_CP018363.1_5607744_5608005_+	NA	NA|103aa|down_8|NZ_CP018363.1_5608012_5608321_+	NA	NA|250aa|down_9|NZ_CP018363.1_5608407_5609157_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily
