assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001941785.1_ASM194178v1	NZ_CP019030	Limosilactobacillus fermentum strain SNUV175 chromosome, complete genome	1	111023-111143	1	CRISPRCasFinder	no		cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	Orphan	GATCCTCCAATTTACTTCCTTAATTATACTAAATCAGAGTCTCTA	45	1	6	111068-111098|111068-111098|111068-111098|111068-111098|111068-111098|111068-111098	NZ_CP019030.1_180839-180869|NZ_CP019030.1_885852-885822|NZ_CP019030.1_1510640-1510670|NZ_CP019030.1_1577922-1577892|NZ_CP019030.1_1813758-1813728|NZ_CP019032.1_23674-23704	NA	1	1	Orphan	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	NA|122aa|up_2|NZ_CP019030.1_108621_108987_+,NA|106aa|down_7|NZ_CP019030.1_119708_120026_-	NA|280aa|up_9|NZ_CP019030.1_99442_100282_-	PRK08123, PRK08123, histidinol-phosphatase HisJ	NA|183aa|up_8|NZ_CP019030.1_101268_101817_-	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|429aa|up_7|NZ_CP019030.1_102197_103484_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|382aa|up_6|NZ_CP019030.1_103701_104847_-	PRK14276, PRK14276, chaperone protein DnaJ; Provisional	NA|619aa|up_5|NZ_CP019030.1_104958_106815_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|196aa|up_4|NZ_CP019030.1_106851_107439_-	PRK14162, PRK14162, heat shock protein GrpE; Provisional	NA|349aa|up_3|NZ_CP019030.1_107449_108496_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|122aa|up_2|NZ_CP019030.1_108621_108987_+	NA	NA|293aa|up_1|NZ_CP019030.1_109827_110706_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_0|NZ_CP019030.1_110729_111017_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|467aa|down_0|NZ_CP019030.1_111261_112662_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|443aa|down_1|NZ_CP019030.1_112951_114280_+	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|204aa|down_2|NZ_CP019030.1_114454_115066_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|118aa|down_3|NZ_CP019030.1_115078_115432_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|321aa|down_4|NZ_CP019030.1_115777_116740_-	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|321aa|down_5|NZ_CP019030.1_117238_118201_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|391aa|down_6|NZ_CP019030.1_118383_119556_-	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|106aa|down_7|NZ_CP019030.1_119708_120026_-	NA	NA|431aa|down_8|NZ_CP019030.1_120006_121299_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|329aa|down_9|NZ_CP019030.1_121454_122441_-	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_001941785.1_ASM194178v1	NZ_CP019030	Limosilactobacillus fermentum strain SNUV175 chromosome, complete genome	2	220638-220760	2	CRISPRCasFinder	no		cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	Orphan	TGATTGCTTGCTTCTGCCATTCGTCCCATTCTGCTTTAG	39	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	NA|211aa|up_9|NZ_CP019030.1_215408_216041_-,NA|197aa|up_6|NZ_CP019030.1_216992_217583_-,NA|151aa|up_4|NZ_CP019030.1_218459_218912_-,NA|68aa|up_3|NZ_CP019030.1_218940_219144_-,NA|49aa|up_0|NZ_CP019030.1_220459_220606_-,NA|53aa|down_0|NZ_CP019030.1_220811_220970_-,NA|118aa|down_3|NZ_CP019030.1_222563_222917_+,NA|63aa|down_7|NZ_CP019030.1_225748_225937_-	NA|211aa|up_9|NZ_CP019030.1_215408_216041_-	NA	NA|62aa|up_8|NZ_CP019030.1_216048_216234_-	cd16402, ParB_N_like_MT, ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain	NA|69aa|up_7|NZ_CP019030.1_216628_216835_+	pfam05532, CsbD, CsbD-like	NA|197aa|up_6|NZ_CP019030.1_216992_217583_-	NA	NA|162aa|up_5|NZ_CP019030.1_217800_218286_-	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|151aa|up_4|NZ_CP019030.1_218459_218912_-	NA	NA|68aa|up_3|NZ_CP019030.1_218940_219144_-	NA	NA|161aa|up_2|NZ_CP019030.1_219167_219650_-	pfam06356, DUF1064, Protein of unknown function (DUF1064)	NA|66aa|up_1|NZ_CP019030.1_219652_219850_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|49aa|up_0|NZ_CP019030.1_220459_220606_-	NA	NA|53aa|down_0|NZ_CP019030.1_220811_220970_-	NA	NA|264aa|down_1|NZ_CP019030.1_220972_221764_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|245aa|down_2|NZ_CP019030.1_221772_222507_-	pfam09524, Phg_2220_C, Conserved phage C-terminus (Phg_2220_C)	NA|118aa|down_3|NZ_CP019030.1_222563_222917_+	NA	NA|147aa|down_4|NZ_CP019030.1_223210_223651_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|283aa|down_5|NZ_CP019030.1_223651_224500_-	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799)	NA|337aa|down_6|NZ_CP019030.1_224492_225503_-	pfam03837, RecT, RecT family	NA|63aa|down_7|NZ_CP019030.1_225748_225937_-	NA	NA|86aa|down_8|NZ_CP019030.1_226098_226356_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|70aa|down_9|NZ_CP019030.1_226565_226775_-	pfam05339, DUF739, Protein of unknown function (DUF739)
GCF_001941785.1_ASM194178v1	NZ_CP019030	Limosilactobacillus fermentum strain SNUV175 chromosome, complete genome	3	458680-458768	3	CRISPRCasFinder	no		cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	Orphan	TCGCCCTTAGGGCCTTGAATGCCTTG	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	NA|78aa|up_8|NZ_CP019030.1_453642_453876_-,NA|107aa|up_5|NZ_CP019030.1_455561_455882_-,NA|141aa|up_2|NZ_CP019030.1_456558_456981_-,NA|144aa|up_0|NZ_CP019030.1_457970_458402_-,NA|150aa|down_6|NZ_CP019030.1_468104_468554_-,NA|170aa|down_7|NZ_CP019030.1_468605_469115_-	NA|169aa|up_9|NZ_CP019030.1_453146_453653_-	pfam10097, DUF2335, Predicted membrane protein (DUF2335)	NA|78aa|up_8|NZ_CP019030.1_453642_453876_-	NA	NA|371aa|up_7|NZ_CP019030.1_454016_455129_-	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|145aa|up_6|NZ_CP019030.1_455130_455565_-	pfam09682, Phage_holin_6_1, Bacteriophage holin of superfamily 6 (Holin_LLH)	NA|107aa|up_5|NZ_CP019030.1_455561_455882_-	NA	NA|48aa|up_4|NZ_CP019030.1_456032_456176_-	pfam09693, Phage_XkdX, Phage uncharacterized protein (Phage_XkdX)	NA|122aa|up_3|NZ_CP019030.1_456178_456544_-	PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase	NA|141aa|up_2|NZ_CP019030.1_456558_456981_-	NA	NA|291aa|up_1|NZ_CP019030.1_457085_457958_-	pfam10651, DUF2479, Domain of unknown function (DUF2479)	NA|144aa|up_0|NZ_CP019030.1_457970_458402_-	NA	NA|298aa|down_0|NZ_CP019030.1_458958_459852_-	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|342aa|down_1|NZ_CP019030.1_459742_460768_-	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|528aa|down_2|NZ_CP019030.1_460764_462348_-	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|269aa|down_3|NZ_CP019030.1_462359_463166_-	pfam05709, Sipho_tail, Phage tail protein	NA|1443aa|down_4|NZ_CP019030.1_463165_467494_-	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains	NA|181aa|down_5|NZ_CP019030.1_467508_468051_-	pfam06854, Phage_Gp15, Bacteriophage Gp15 protein	NA|150aa|down_6|NZ_CP019030.1_468104_468554_-	NA	NA|170aa|down_7|NZ_CP019030.1_468605_469115_-	NA	NA|133aa|down_8|NZ_CP019030.1_469131_469530_-	pfam12691, Minor_capsid_3, Minor capsid protein from bacteriophage	NA|132aa|down_9|NZ_CP019030.1_469519_469915_-	pfam11114, Minor_capsid_2, Minor capsid protein
GCF_001941785.1_ASM194178v1	NZ_CP019030	Limosilactobacillus fermentum strain SNUV175 chromosome, complete genome	4	1768888-1769099	4,1	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas14j	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	Type I-E	GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC	28,28	0	0	NA	NA	NA:NA	3,3	3	TypeV,TypeI-E	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	NA,NA	NA|476aa|up_9|NZ_CP019030.1_1757410_1758838_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|120aa|up_8|NZ_CP019030.1_1758958_1759318_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	cas3|929aa|up_7|NZ_CP019030.1_1759548_1762335_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|up_6|NZ_CP019030.1_1762315_1763974_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|195aa|up_5|NZ_CP019030.1_1763990_1764575_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|367aa|up_4|NZ_CP019030.1_1764583_1765684_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|NZ_CP019030.1_1765664_1766372_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|219aa|up_2|NZ_CP019030.1_1766384_1767041_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|up_1|NZ_CP019030.1_1767037_1767976_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|293aa|up_0|NZ_CP019030.1_1767979_1768858_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|150aa|down_0|NZ_CP019030.1_1771635_1772085_+	PRK05463, PRK05463, putative hydro-lyase	NA|322aa|down_1|NZ_CP019030.1_1772420_1773386_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|430aa|down_2|NZ_CP019030.1_1773385_1774675_+	PRK09357, pyrC, dihydroorotase; Validated	NA|361aa|down_3|NZ_CP019030.1_1774676_1775759_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1060aa|down_4|NZ_CP019030.1_1775758_1778938_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|306aa|down_5|NZ_CP019030.1_1778950_1779868_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|269aa|down_6|NZ_CP019030.1_1780099_1780906_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|458aa|down_7|NZ_CP019030.1_1781034_1782408_+	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|152aa|down_8|NZ_CP019030.1_1782458_1782914_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|417aa|down_9|NZ_CP019030.1_1782987_1784238_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001941785.1_ASM194178v1	NZ_CP019030	Limosilactobacillus fermentum strain SNUV175 chromosome, complete genome	5	1769111-1770308	2,1,5	CRT,PILER-CR,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,cas14j	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	Type I-E	GTGCTCCCCATGTATATGGGGGTGATCCT,GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC	29,28,28	0	0	NA	NA	NA:NA:NA	19,18,18	19	TypeV,TypeI-E	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	NA,NA	NA|476aa|up_9|NZ_CP019030.1_1757410_1758838_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|120aa|up_8|NZ_CP019030.1_1758958_1759318_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	cas3|929aa|up_7|NZ_CP019030.1_1759548_1762335_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|553aa|up_6|NZ_CP019030.1_1762315_1763974_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|195aa|up_5|NZ_CP019030.1_1763990_1764575_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|367aa|up_4|NZ_CP019030.1_1764583_1765684_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|NZ_CP019030.1_1765664_1766372_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|219aa|up_2|NZ_CP019030.1_1766384_1767041_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|up_1|NZ_CP019030.1_1767037_1767976_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|293aa|up_0|NZ_CP019030.1_1767979_1768858_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|150aa|down_0|NZ_CP019030.1_1771635_1772085_+	PRK05463, PRK05463, putative hydro-lyase	NA|322aa|down_1|NZ_CP019030.1_1772420_1773386_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|430aa|down_2|NZ_CP019030.1_1773385_1774675_+	PRK09357, pyrC, dihydroorotase; Validated	NA|361aa|down_3|NZ_CP019030.1_1774676_1775759_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1060aa|down_4|NZ_CP019030.1_1775758_1778938_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|306aa|down_5|NZ_CP019030.1_1778950_1779868_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|269aa|down_6|NZ_CP019030.1_1780099_1780906_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|458aa|down_7|NZ_CP019030.1_1781034_1782408_+	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]	NA|152aa|down_8|NZ_CP019030.1_1782458_1782914_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|417aa|down_9|NZ_CP019030.1_1782987_1784238_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001941785.1_ASM194178v1	NZ_CP019033	Limosilactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence	1	21047-21148	1	CRISPRCasFinder	no			Orphan	GTCTATTTTTTAGACTTTCGCTCGTAGCAAGGGTTT	36	0	0	NA	NA	NA	1	1	Orphan	cas14j,DEDDh,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG	NA|86aa|up_9|NZ_CP019033.1_10416_10674_-,NA|172aa|up_8|NZ_CP019033.1_10655_11171_-,NA|76aa|up_3|NZ_CP019033.1_18185_18413_+,NA|86aa|up_2|NZ_CP019033.1_18458_18716_+,NA|92aa|down_0|NZ_CP019033.1_22175_22451_-	NA|86aa|up_9|NZ_CP019033.1_10416_10674_-	NA	NA|172aa|up_8|NZ_CP019033.1_10655_11171_-	NA	NA|983aa|up_7|NZ_CP019033.1_11151_14100_-	TIGR03929, T7_esaA_Nterm, type VII secretion protein EsaA, N-terminal domain	NA|99aa|up_6|NZ_CP019033.1_14209_14506_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|328aa|up_5|NZ_CP019033.1_14723_15707_+	pfam05257, CHAP, CHAP domain	NA|688aa|up_4|NZ_CP019033.1_15842_17906_-	pfam03389, MobA_MobL, MobA/MobL family	NA|76aa|up_3|NZ_CP019033.1_18185_18413_+	NA	NA|86aa|up_2|NZ_CP019033.1_18458_18716_+	NA	NA|308aa|up_1|NZ_CP019033.1_18705_19629_-	pfam06414, Zeta_toxin, Zeta toxin	NA|91aa|up_0|NZ_CP019033.1_19631_19904_-	pfam08998, Epsilon_antitox, Bacterial epsilon antitoxin	NA|92aa|down_0|NZ_CP019033.1_22175_22451_-	NA	NA|350aa|down_1|NZ_CP019033.1_22453_23503_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|87aa|down_2|NZ_CP019033.1_23877_24138_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|124aa|down_3|NZ_CP019033.1_24130_24502_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|192aa|down_4|NZ_CP019033.1_24613_25189_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|615aa|down_5|NZ_CP019033.1_25353_27198_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|401aa|down_6|NZ_CP019033.1_27360_28563_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|58aa|down_7|NZ_CP019033.1_28637_28811_-	cd18159, REC_OmpR_NsrR-like, phosphoacceptor receiver (REC) domain of Streptococcus agalactiae NsrR-like OmpR family response regulators	NA|NA	NA	NA|NA	NA
