assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001941865.1_ASM194186v1	NZ_CP016162	Pseudomonas alcaliphila JAB1 chromosome, complete genome	1	2031486-2031779	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	GGCGGCGACGGCAACGACGTGATC	24	0	0	NA	NA	NA	4	4	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|105aa|up_8|NZ_CP016162.1_2018883_2019198_+,NA|158aa|up_6|NZ_CP016162.1_2021402_2021876_+,NA|186aa|down_9|NZ_CP016162.1_2056116_2056674_-	NA|114aa|up_9|NZ_CP016162.1_2018457_2018799_-	PRK11295, PRK11295, HNH nuclease family protein	NA|105aa|up_8|NZ_CP016162.1_2018883_2019198_+	NA	NA|681aa|up_7|NZ_CP016162.1_2019254_2021297_-	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|158aa|up_6|NZ_CP016162.1_2021402_2021876_+	NA	NA|149aa|up_5|NZ_CP016162.1_2021939_2022386_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|258aa|up_4|NZ_CP016162.1_2022390_2023164_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|175aa|up_3|NZ_CP016162.1_2023168_2023693_+	pfam11157, DUF2937, Protein of unknown function (DUF2937)	NA|448aa|up_2|NZ_CP016162.1_2023727_2025071_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|449aa|up_1|NZ_CP016162.1_2025072_2026419_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|580aa|up_0|NZ_CP016162.1_2026425_2028165_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|223aa|down_0|NZ_CP016162.1_2039734_2040403_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|488aa|down_1|NZ_CP016162.1_2040414_2041878_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|2060aa|down_2|NZ_CP016162.1_2042439_2048619_+	cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial family of heme peroxidases	NA|349aa|down_3|NZ_CP016162.1_2048831_2049878_+	pfam09935, DUF2167, Protein of unknown function (DUF2167)	NA|393aa|down_4|NZ_CP016162.1_2050000_2051179_-	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|282aa|down_5|NZ_CP016162.1_2051314_2052160_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|361aa|down_6|NZ_CP016162.1_2052305_2053388_-	pfam05359, DUF748, Domain of Unknown Function (DUF748)	NA|324aa|down_7|NZ_CP016162.1_2053515_2054487_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|194aa|down_8|NZ_CP016162.1_2054820_2055402_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|186aa|down_9|NZ_CP016162.1_2056116_2056674_-	NA
GCF_001941865.1_ASM194186v1	NZ_CP016162	Pseudomonas alcaliphila JAB1 chromosome, complete genome	2	3204939-3205043	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	AGCAGCTCGGCGTTACACGGATTTTCGGCG	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA|128aa|down_3|NZ_CP016162.1_3209283_3209667_+,NA|109aa|down_6|NZ_CP016162.1_3212267_3212594_-	NA|508aa|up_9|NZ_CP016162.1_3191990_3193514_+	TIGR03173, pbuX, xanthine permease	NA|287aa|up_8|NZ_CP016162.1_3193590_3194451_+	COG3248, Tsx, Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|489aa|up_7|NZ_CP016162.1_3195740_3197207_+	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain	NA|280aa|up_6|NZ_CP016162.1_3197211_3198051_-	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|332aa|up_5|NZ_CP016162.1_3198279_3199275_-	PRK13361, PRK13361, GTP 3',8-cyclase MoaA	NA|215aa|up_4|NZ_CP016162.1_3199487_3200132_+	pfam08362, TetR_C_3, YcdC-like protein, C-terminal region	NA|145aa|up_3|NZ_CP016162.1_3200411_3200846_-	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|592aa|up_2|NZ_CP016162.1_3201181_3202957_+	PRK11269, PRK11269, glyoxylate carboligase; Provisional	NA|261aa|up_1|NZ_CP016162.1_3203071_3203854_+	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase	NA|297aa|up_0|NZ_CP016162.1_3203996_3204887_+	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|424aa|down_0|NZ_CP016162.1_3205374_3206646_+	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|472aa|down_1|NZ_CP016162.1_3206642_3208058_+	PRK06247, PRK06247, pyruvate kinase; Provisional	NA|305aa|down_2|NZ_CP016162.1_3208321_3209236_+	pfam03253, UT, Urea transporter	NA|128aa|down_3|NZ_CP016162.1_3209283_3209667_+	NA	NA|289aa|down_4|NZ_CP016162.1_3209760_3210627_+	pfam00520, Ion_trans, Ion transport protein	NA|486aa|down_5|NZ_CP016162.1_3210711_3212169_+	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|109aa|down_6|NZ_CP016162.1_3212267_3212594_-	NA	NA|404aa|down_7|NZ_CP016162.1_3212590_3213802_-	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|164aa|down_8|NZ_CP016162.1_3213798_3214290_-	pfam03918, CcmH, Cytochrome C biogenesis protein	NA|181aa|down_9|NZ_CP016162.1_3214415_3214958_-	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif
GCF_001941865.1_ASM194186v1	NZ_CP016162	Pseudomonas alcaliphila JAB1 chromosome, complete genome	3	4287891-4288346	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no		csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	CGGTTCATCCCCGCTGGCGCGGGGAACAC,TCATCCCCGCTGGCGCGGGGAACAC,CGGTTCATCCCCGCTGGCGCGGGGAACAC	29,25,29	0	0	NA	NA	I-E:I-E:I-E	7,7,6	7	Orphan	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|241aa|up_1|NZ_CP016162.1_4285884_4286607_+,NA	NA|73aa|up_9|NZ_CP016162.1_4278337_4278556_+	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|131aa|up_8|NZ_CP016162.1_4278637_4279030_+	cd01040, Mb-like, myoglobin-like; M family globin domain	NA|190aa|up_7|NZ_CP016162.1_4279255_4279825_-	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|344aa|up_6|NZ_CP016162.1_4279999_4281031_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|148aa|up_5|NZ_CP016162.1_4281246_4281690_+	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|447aa|up_4|NZ_CP016162.1_4281892_4283233_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|324aa|up_3|NZ_CP016162.1_4283313_4284285_+	PRK06110, PRK06110, threonine dehydratase	NA|491aa|up_2|NZ_CP016162.1_4284286_4285759_-	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|241aa|up_1|NZ_CP016162.1_4285884_4286607_+	NA	NA|227aa|up_0|NZ_CP016162.1_4286912_4287593_-	pfam01891, CbiM, Cobalt uptake substrate-specific transmembrane region	NA|550aa|down_0|NZ_CP016162.1_4288430_4290080_-	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	NA|214aa|down_1|NZ_CP016162.1_4290076_4290718_-	PRK14996, PRK14996, TetR family transcriptional regulator; Provisional	NA|804aa|down_2|NZ_CP016162.1_4290943_4293355_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|297aa|down_3|NZ_CP016162.1_4293446_4294337_-	PRK10576, PRK10576, Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD	NA|659aa|down_4|NZ_CP016162.1_4294333_4296310_-	PRK10577, PRK10577, Fe(3+)-hydroxamate ABC transporter permease FhuB	NA|256aa|down_5|NZ_CP016162.1_4296312_4297080_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|255aa|down_6|NZ_CP016162.1_4297073_4297838_-	TIGR03950, hypothetical_protein, siderophore ferric iron reductase, AHA_1954 family	NA|387aa|down_7|NZ_CP016162.1_4297928_4299089_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|266aa|down_8|NZ_CP016162.1_4299232_4300030_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|210aa|down_9|NZ_CP016162.1_4300026_4300656_+	PRK00043, thiE, thiamine phosphate synthase
GCF_001941865.1_ASM194186v1	NZ_CP016162	Pseudomonas alcaliphila JAB1 chromosome, complete genome	4	5187599-5188406	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	CTTCACTGCCGAGTAGGCAGCTCAGAGA,CTTCACTGCCGAGTAGGCAGCTCAGAGA,CTTCACTGCCGAGTAGGCAGCTCAGA	28,28,26	0	0	NA	NA	I-F:I-F:I-F	12,13,13	13	TypeI-F	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|141aa|up_4|NZ_CP016162.1_5183674_5184097_-,NA	NA|853aa|up_9|NZ_CP016162.1_5176877_5179436_-	COG4666, COG4666, TRAP-type uncharacterized transport system, fused permease components [General function prediction only]	NA|324aa|up_8|NZ_CP016162.1_5179738_5180710_-	cd13568, PBP2_TAXI_TRAP_like_3, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|343aa|up_7|NZ_CP016162.1_5180880_5181909_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|334aa|up_6|NZ_CP016162.1_5182105_5183107_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|142aa|up_5|NZ_CP016162.1_5183189_5183615_+	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily	NA|141aa|up_4|NZ_CP016162.1_5183674_5184097_-	NA	NA|354aa|up_3|NZ_CP016162.1_5184221_5185283_+	pfam10023, Aminopep, Putative aminopeptidase	NA|77aa|up_2|NZ_CP016162.1_5185346_5185577_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|216aa|up_1|NZ_CP016162.1_5185651_5186299_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|324aa|up_0|NZ_CP016162.1_5186358_5187330_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	cas1|323aa|down_0|NZ_CP016162.1_5188460_5189429_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1117aa|down_1|NZ_CP016162.1_5189425_5192776_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|422aa|down_2|NZ_CP016162.1_5192881_5194147_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|114aa|down_3|NZ_CP016162.1_5194146_5194488_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas8f|454aa|down_4|NZ_CP016162.1_5195283_5196645_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|334aa|down_5|NZ_CP016162.1_5196637_5197639_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|down_6|NZ_CP016162.1_5197644_5198664_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|188aa|down_7|NZ_CP016162.1_5198666_5199230_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|163aa|down_8|NZ_CP016162.1_5200636_5201125_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|181aa|down_9|NZ_CP016162.1_5201133_5201676_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E
GCF_001941865.1_ASM194186v1	NZ_CP016162	Pseudomonas alcaliphila JAB1 chromosome, complete genome	5	5199361-5200529	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	18,19,19	19	TypeI-F	csa3,DEDDh,cas3,WYL,RT,DinG,PD-DExK,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|216aa|up_9|NZ_CP016162.1_5185651_5186299_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|324aa|up_8|NZ_CP016162.1_5186358_5187330_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	cas1|323aa|up_7|NZ_CP016162.1_5188460_5189429_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1117aa|up_6|NZ_CP016162.1_5189425_5192776_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|422aa|up_5|NZ_CP016162.1_5192881_5194147_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|114aa|up_4|NZ_CP016162.1_5194146_5194488_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas8f|454aa|up_3|NZ_CP016162.1_5195283_5196645_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|334aa|up_2|NZ_CP016162.1_5196637_5197639_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|340aa|up_1|NZ_CP016162.1_5197644_5198664_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|188aa|up_0|NZ_CP016162.1_5198666_5199230_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|163aa|down_0|NZ_CP016162.1_5200636_5201125_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|181aa|down_1|NZ_CP016162.1_5201133_5201676_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|683aa|down_2|NZ_CP016162.1_5201805_5203854_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|96aa|down_3|NZ_CP016162.1_5203850_5204138_+	pfam09526, DUF2387, Probable metal-binding protein (DUF2387)	NA|264aa|down_4|NZ_CP016162.1_5204360_5205152_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|329aa|down_5|NZ_CP016162.1_5205233_5206220_+	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|354aa|down_6|NZ_CP016162.1_5206296_5207358_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|243aa|down_7|NZ_CP016162.1_5207724_5208453_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|101aa|down_8|NZ_CP016162.1_5208574_5208877_-	smart00938, P-II, Nitrogen regulatory protein P-II	NA|314aa|down_9|NZ_CP016162.1_5208878_5209820_-	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily
