assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	1	731980-732079	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP019117.1_729917_730034_+,NA|230aa|down_3|NZ_CP019117.1_735824_736514_-,NA|130aa|down_5|NZ_CP019117.1_737150_737540_+,NA|100aa|down_6|NZ_CP019117.1_737677_737977_+	NA|336aa|up_9|NZ_CP019117.1_721713_722721_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP019117.1_723306_724104_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP019117.1_724464_725109_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP019117.1_725791_727942_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP019117.1_728087_728447_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP019117.1_728636_729353_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP019117.1_729352_729826_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP019117.1_729917_730034_+	NA	NA|215aa|up_1|NZ_CP019117.1_730178_730823_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP019117.1_730940_731807_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP019117.1_732096_733317_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|156aa|down_1|NZ_CP019117.1_733313_733781_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|down_2|NZ_CP019117.1_734023_735670_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|230aa|down_3|NZ_CP019117.1_735824_736514_-	NA	NA|148aa|down_4|NZ_CP019117.1_736640_737084_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_5|NZ_CP019117.1_737150_737540_+	NA	NA|100aa|down_6|NZ_CP019117.1_737677_737977_+	NA	NA|181aa|down_7|NZ_CP019117.1_738056_738599_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_8|NZ_CP019117.1_738693_739260_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_9|NZ_CP019117.1_739261_739720_-	PRK00124, PRK00124, YaiI/YqxD family protein
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2	819711-819795	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	819737-819769|819737-819769	NZ_CP019117.1_1059375-1059407|NZ_CP019117.1_2358186-2358154	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|33aa|up_1|NZ_CP019117.1_818151_818250_+,NA	NA|357aa|up_9|NZ_CP019117.1_808160_809231_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP019117.1_809548_810604_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP019117.1_810767_811409_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP019117.1_811552_812419_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP019117.1_812782_813865_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP019117.1_813857_814532_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP019117.1_814592_815165_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP019117.1_815578_818110_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP019117.1_818151_818250_+	NA	NA|370aa|up_0|NZ_CP019117.1_818424_819535_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP019117.1_820303_821143_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP019117.1_821316_821967_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP019117.1_821963_822200_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP019117.1_822468_824454_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP019117.1_824461_827308_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP019117.1_827918_828851_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP019117.1_828856_829699_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP019117.1_829706_830192_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP019117.1_830199_831639_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP019117.1_831705_832641_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	3	884107-884186	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|141aa|up_9|NZ_CP019117.1_873058_873481_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_8|NZ_CP019117.1_873628_874345_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_7|NZ_CP019117.1_874427_874967_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_6|NZ_CP019117.1_875116_875437_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_5|NZ_CP019117.1_875580_875937_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_4|NZ_CP019117.1_876094_876475_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_3|NZ_CP019117.1_878229_879315_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|633aa|up_2|NZ_CP019117.1_879311_881210_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|128aa|up_1|NZ_CP019117.1_881210_881594_+	pfam13569, DUF4132, Domain of unknown function (DUF4132)	NA|525aa|up_0|NZ_CP019117.1_881910_883485_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|129aa|down_0|NZ_CP019117.1_884443_884830_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP019117.1_884822_885119_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP019117.1_885368_886394_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP019117.1_886386_887082_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP019117.1_887099_887921_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP019117.1_888735_888930_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP019117.1_889163_890015_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP019117.1_890342_891104_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP019117.1_891201_892509_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP019117.1_892614_893865_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	4	933228-933313	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	933258-933283|933258-933283	NZ_CP019117.1_2101109-2101134|NZ_CP019117.1_2163210-2163235	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP019117.1_922117_923614_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP019117.1_923606_923948_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP019117.1_923947_924376_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP019117.1_924368_926774_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP019117.1_926904_927288_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP019117.1_927351_927945_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP019117.1_928359_928737_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP019117.1_929098_930226_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP019117.1_930533_931724_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP019117.1_931832_933077_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP019117.1_933470_934400_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP019117.1_934641_936021_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP019117.1_936010_937216_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP019117.1_937566_938898_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP019117.1_939223_939799_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP019117.1_939803_940328_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP019117.1_940343_940919_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP019117.1_941078_944555_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP019117.1_944555_948209_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP019117.1_948374_949277_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	5	2016090-2016172	5	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCTGTGTTGGGGCCCCGCCAACCTGCA	27	1	5	2016117-2016145|2016117-2016145|2016117-2016145|2016117-2016145|2016117-2016145	NZ_CP019117.1_2016348-2016376|NZ_CP019117.1_731920-731892|NZ_CP019117.1_1059421-1059449|NZ_CP019117.1_1085596-1085624|NZ_CP019117.1_1646393-1646421	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP019117.1_2010296_2010572_+,NA|129aa|up_1|NZ_CP019117.1_2014554_2014941_-,NA|138aa|down_1|NZ_CP019117.1_2017846_2018260_-,NA|37aa|down_2|NZ_CP019117.1_2018288_2018399_-,NA|31aa|down_6|NZ_CP019117.1_2021404_2021497_-	NA|419aa|up_9|NZ_CP019117.1_2008219_2009476_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP019117.1_2009478_2009679_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP019117.1_2009825_2010290_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP019117.1_2010296_2010572_+	NA	NA|406aa|up_5|NZ_CP019117.1_2010849_2012067_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP019117.1_2012179_2012809_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP019117.1_2012798_2013842_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP019117.1_2013838_2014540_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP019117.1_2014554_2014941_-	NA	NA|253aa|up_0|NZ_CP019117.1_2015157_2015916_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP019117.1_2016671_2017658_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP019117.1_2017846_2018260_-	NA	NA|37aa|down_2|NZ_CP019117.1_2018288_2018399_-	NA	NA|244aa|down_3|NZ_CP019117.1_2018484_2019216_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP019117.1_2019217_2020531_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP019117.1_2020822_2021323_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP019117.1_2021404_2021497_-	NA	DEDDh|185aa|down_7|NZ_CP019117.1_2021713_2022268_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP019117.1_2022334_2023405_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP019117.1_2023651_2024182_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	6	2026883-2027074	1	CRT	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	NNTCTTTGTTGGGGCNCCCACC	22	1	8	2026962-2026995|2026962-2026995|2026962-2026995|2026962-2026995|2026962-2026995|2026962-2026995|2026962-2026995|2026962-2026995	NZ_CP019117.1_271517-271484|NZ_CP019117.1_395720-395687|NZ_CP019117.1_786605-786572|NZ_CP019117.1_819776-819809|NZ_CP019117.1_1085531-1085564|NZ_CP019117.1_1765601-1765568|NZ_CP019117.1_2323798-2323831|NZ_CP019117.1_2463905-2463872	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|37aa|up_9|NZ_CP019117.1_2018288_2018399_-,NA|31aa|up_5|NZ_CP019117.1_2021404_2021497_-,NA|49aa|down_0|NZ_CP019117.1_2027378_2027525_-	NA|37aa|up_9|NZ_CP019117.1_2018288_2018399_-	NA	NA|244aa|up_8|NZ_CP019117.1_2018484_2019216_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP019117.1_2019217_2020531_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP019117.1_2020822_2021323_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP019117.1_2021404_2021497_-	NA	DEDDh|185aa|up_4|NZ_CP019117.1_2021713_2022268_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP019117.1_2022334_2023405_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP019117.1_2023651_2024182_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP019117.1_2024351_2025713_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP019117.1_2025793_2026741_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP019117.1_2027378_2027525_-	NA	NA|476aa|down_1|NZ_CP019117.1_2027563_2028991_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP019117.1_2029003_2030461_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP019117.1_2030462_2030765_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP019117.1_2031131_2032670_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP019117.1_2032758_2033958_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP019117.1_2033970_2035974_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP019117.1_2035977_2038170_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP019117.1_2038166_2038859_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP019117.1_2039041_2039344_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	7	2226958-2227159	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|364aa|up_9|NZ_CP019117.1_2206835_2207927_+,NA|35aa|up_8|NZ_CP019117.1_2208368_2208473_-,NA|53aa|up_7|NZ_CP019117.1_2209152_2209311_+,NA	NA|364aa|up_9|NZ_CP019117.1_2206835_2207927_+	NA	NA|35aa|up_8|NZ_CP019117.1_2208368_2208473_-	NA	NA|53aa|up_7|NZ_CP019117.1_2209152_2209311_+	NA	NA|286aa|up_6|NZ_CP019117.1_2209969_2210827_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP019117.1_2210894_2211677_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP019117.1_2211908_2213714_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP019117.1_2214394_2215933_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP019117.1_2215967_2218100_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP019117.1_2218111_2218546_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP019117.1_2218545_2219652_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP019117.1_2227647_2229003_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP019117.1_2229029_2229962_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP019117.1_2229963_2230773_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP019117.1_2230962_2231871_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP019117.1_2238087_2239152_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP019117.1_2239299_2240742_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP019117.1_2240930_2241404_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP019117.1_2241525_2242869_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP019117.1_2243046_2243730_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP019117.1_2243748_2244936_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	8	2285490-2285615	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|56aa|up_8|NZ_CP019117.1_2275896_2276064_+,NA|61aa|up_1|NZ_CP019117.1_2284412_2284595_-,NA	NA|139aa|up_9|NZ_CP019117.1_2275237_2275654_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP019117.1_2275896_2276064_+	NA	NA|809aa|up_7|NZ_CP019117.1_2276060_2278487_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP019117.1_2278546_2279401_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP019117.1_2279611_2280427_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP019117.1_2280721_2281147_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP019117.1_2281537_2282242_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP019117.1_2282278_2283943_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP019117.1_2284412_2284595_-	NA	NA|60aa|up_0|NZ_CP019117.1_2285244_2285424_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP019117.1_2285672_2287109_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP019117.1_2287457_2287856_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP019117.1_2287869_2288307_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP019117.1_2288555_2289350_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP019117.1_2289354_2290161_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP019117.1_2290150_2291011_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP019117.1_2291007_2291817_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_7|NZ_CP019117.1_2292349_2292718_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_8|NZ_CP019117.1_2292734_2293679_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_9|NZ_CP019117.1_2293753_2294143_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated
GCF_001956755.1_ASM195675v1	NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	9	2798591-2798674	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	4	2798617-2798648|2798617-2798648|2798617-2798648|2798617-2798648	NZ_CP019117.1_2358154-2358123|NZ_CP019117.1_819769-819800|NZ_CP019117.1_1059465-1059496|NZ_CP019117.1_1855984-1855953	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|64aa|up_7|NZ_CP019117.1_2792542_2792734_+,NA|166aa|up_6|NZ_CP019117.1_2793820_2794318_-,NA	NA|253aa|up_9|NZ_CP019117.1_2789822_2790581_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|NZ_CP019117.1_2790570_2792451_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|NZ_CP019117.1_2792542_2792734_+	NA	NA|166aa|up_6|NZ_CP019117.1_2793820_2794318_-	NA	NA|250aa|up_5|NZ_CP019117.1_2794319_2795069_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_4|NZ_CP019117.1_2795087_2795891_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NZ_CP019117.1_2796374_2796575_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP019117.1_2796701_2797271_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP019117.1_2797523_2797919_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP019117.1_2797986_2798340_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP019117.1_2798892_2799732_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP019117.1_2799774_2800494_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP019117.1_2800493_2802371_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP019117.1_2802437_2803817_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP019117.1_2803960_2804314_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP019117.1_2804434_2804572_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
