The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	329163	374073	2804759	terminase,integrase,head,tail,portal,protease,plate,capsid,holin	Staphylococcus_phage(77.61%)	67	329053:329070	375038:375055
329053:329070	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_031795352.1|329163_330369_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	1.6e-220
WP_000191466.1|330494_331109_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_074370993.1|331105_331252_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000449655.1|331341_331737_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_076050617.1|331765_332254_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	88.9	5.3e-21
WP_000524999.1|332271_332733_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	3.7e-85
WP_000429766.1|332745_333075_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|333235_333427_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_192929492.1|333514_333691_+	hypothetical protein	NA	B7T0F9	Staphylococcus_virus	96.6	9.7e-26
WP_148562283.1|333687_333927_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	97.5	5.7e-37
WP_001036299.1|333973_334189_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_031885219.1|334213_334477_+	helix-turn-helix domain-containing protein	NA	A0ZS16	Staphylococcus_virus	98.9	9.7e-46
WP_001285948.1|334489_334651_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|334729_335053_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|335067_335430_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000762545.1|335426_336593_+	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	99.7	7.0e-221
WP_000645045.1|336618_337176_+	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	100.0	1.8e-97
WP_076050776.1|337243_339196_+	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	99.7	0.0e+00
WP_000152769.1|339207_339363_+	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_031916945.1|339362_339548_+	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	95.1	7.8e-26
WP_000772917.1|339548_339806_+	helix-turn-helix transcriptional regulator	NA	Q9MBR5	Staphylococcus_prophage	100.0	5.4e-41
WP_031775798.1|339817_340180_+	phage protein	NA	B7T0B4	Staphylococcus_virus	78.3	2.4e-47
WP_015994745.1|340179_340437_+	DUF3310 domain-containing protein	NA	B7T0H1	Staphylococcus_virus	100.0	7.5e-43
WP_015994746.1|340439_340640_+	hypothetical protein	NA	B7T0H2	Staphylococcus_virus	100.0	3.7e-29
WP_015994747.1|340636_341326_+	N-6 DNA methylase	NA	B7T0H3	Staphylococcus_virus	100.0	6.1e-132
WP_015994748.1|341339_341546_+	hypothetical protein	NA	B7T0H4	Staphylococcus_virus	100.0	7.8e-35
WP_015994749.1|341548_341977_+	hypothetical protein	NA	B7T0H5	Staphylococcus_virus	100.0	1.0e-73
WP_000983951.1|341973_342168_+	hypothetical protein	NA	B7T0H6	Staphylococcus_virus	100.0	1.1e-27
WP_031918002.1|342164_342530_+	hypothetical protein	NA	A7YGS3	Staphylococcus_virus	95.9	6.6e-61
WP_031918001.1|342522_342771_+	DUF1024 family protein	NA	A7TWB0	Staphylococcus_phage	96.3	1.0e-36
WP_031913925.1|342763_343297_+	dUTP pyrophosphatase	NA	Q4ZDW8	Staphylococcus_virus	95.5	5.3e-91
WP_000120374.1|343333_343579_+	hypothetical protein	NA	A9CR89	Staphylococcus_phage	100.0	6.5e-28
WP_053865766.1|343575_343782_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	83.8	1.6e-24
WP_053865767.1|343778_343982_+	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	93.9	1.4e-28
WP_053865768.1|343974_344433_+	hypothetical protein	NA	A0A2I6PDM7	Staphylococcus_phage	80.3	1.2e-59
WP_031797327.1|344445_344598_+	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	98.0	2.6e-19
WP_000265251.1|344665_344866_+	DUF1514 family protein	NA	Q9B0E8	Staphylococcus_virus	100.0	3.8e-26
WP_076050619.1|344917_347365_+	virulence-associated E family protein	NA	M9QQL2	Staphylococcus_phage	98.9	0.0e+00
WP_076050621.1|347467_347572_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	97.1	2.3e-11
WP_000665203.1|347705_347996_+	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_001793488.1|347976_349344_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000513699.1|349356_349794_+	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_000160689.1|349950_350265_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000778932.1|350393_350699_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000153555.1|350688_352380_+|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_001100669.1|352384_353623_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_000061872.1|353606_354380_+|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	100.0	9.2e-137
WP_001142739.1|354391_355555_+|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_000050973.1|355623_355902_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395501.1|355913_356246_+	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000110020.1|356242_356644_+	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_001023802.1|356644_357040_+	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000807536.1|357074_357716_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169128.1|357807_358263_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000589167.1|358320_358671_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|358712_358871_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003425.1|358884_365085_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_001190533.1|365084_365909_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_076050624.1|365917_367501_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	99.8	3.5e-308
WP_000179860.1|367500_367791_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000429551.1|367806_369717_+	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000067155.1|369716_371183_+|plate	phage baseplate upper protein	plate	M1TB09	Staphylococcus_phage	100.0	2.7e-254
WP_001166599.1|371182_371572_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|371564_371729_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|371774_372074_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_031916949.1|372209_372647_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	96.6	5.9e-72
WP_076050626.1|372627_374073_+	SH3 domain-containing protein	NA	A0EWV1	Staphylococcus_virus	98.5	1.1e-292
375038:375055	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	764954	772774	2804759		Hokovirus(16.67%)	10	NA	NA
WP_000244416.1|764954_766010_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|766009_766696_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|766670_767144_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|767485_767926_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|768205_768790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|768888_769602_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|769605_770025_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_053865866.1|770026_770695_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_053865865.1|771045_771639_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	3.4e-38
WP_001217804.1|771622_772774_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 3
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	784745	798883	2804759		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663016.1|784745_785804_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|785962_786505_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|787056_787974_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|788064_788166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|788243_789749_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|790088_790589_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|790608_791475_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|792276_792675_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|792637_794743_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|794862_795834_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|796210_797182_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245566.1|797168_798125_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|798121_798883_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 4
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	974840	1023976	2804759	transposase,protease,holin,tRNA	Streptococcus_phage(25.0%)	42	NA	NA
WP_000121211.1|974840_975788_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_076050670.1|977422_978409_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	2.3e-15
WP_000593417.1|979383_980346_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|980357_981239_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|981327_982895_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_020967619.1|983190_984837_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.7	4.1e-291
WP_000448933.1|984863_985853_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|986147_986543_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|986913_987633_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|987753_988740_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_053865700.1|988787_990596_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	1.2e-46
WP_000896691.1|991055_991862_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214067.1|991884_992250_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224620.1|992353_992947_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|993132_993480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|993496_994132_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|994148_994958_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|994954_995809_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062404.1|995829_997215_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|997224_999069_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|999346_1000117_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1000312_1001398_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|1001739_1003308_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|1003450_1004209_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060544.1|1004374_1005100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355329.1|1005101_1005953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|1006695_1007205_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154224.1|1007317_1008508_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|1008485_1009661_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340133.1|1010092_1011577_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|1011557_1011818_+	YueH family protein	NA	NA	NA	NA	NA
WP_053865699.1|1011817_1013380_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.3	3.8e-36
WP_000928413.1|1013681_1014485_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001794169.1|1014703_1017028_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000021872.1|1017044_1018403_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|1018541_1020053_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1020541_1021111_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|1021320_1021539_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_076050673.1|1021619_1022606_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1022804_1022981_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1022995_1023598_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1023898_1023976_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 5
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	1060844	1069317	2804759		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861570.1|1060844_1061327_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|1061313_1062438_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|1062441_1063146_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|1063145_1063409_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|1063410_1064082_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032734.1|1064074_1066264_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483708.1|1066242_1067727_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_076050675.1|1067719_1068748_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|1068750_1069317_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 6
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	1618012	1626324	2804759	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1618012_1618798_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1618923_1619814_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1619823_1621170_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1621283_1622384_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624581.1|1622386_1623064_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1623194_1624301_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1624524_1626324_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 7
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	1695760	1704803	2804759	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1695760_1696279_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595001.1|1696300_1698574_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1698776_1701056_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1701330_1701591_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1701609_1702749_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1702771_1703797_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1703798_1704803_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	1827244	1895269	2804759	protease,tRNA	Staphylococcus_phage(93.02%)	63	NA	NA
WP_076050701.1|1827244_1833814_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.6	6.4e-295
WP_000836472.1|1834137_1834449_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001573995.1|1834470_1836888_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_001025064.1|1837176_1838358_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_053865681.1|1838467_1839421_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1839417_1839981_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_076050704.1|1840099_1840501_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1841073_1841901_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1841903_1842023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196351.1|1842134_1843136_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_001008553.1|1843257_1843722_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.1	4.9e-69
WP_001159032.1|1843734_1844916_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1844926_1845559_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_000077342.1|1845565_1846609_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.9e-195
WP_001261683.1|1847089_1848592_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1849234_1849549_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989104.1|1849548_1850841_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1850927_1851782_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1852057_1852282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1852480_1852951_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1853063_1853507_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030476.1|1853493_1853937_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001168914.1|1854234_1854870_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1855036_1855657_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1856114_1856828_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091444.1|1857086_1857389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1857643_1858009_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1858005_1858359_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_000453316.1|1858608_1859442_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000366165.1|1859653_1860562_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1860686_1861880_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1862251_1863844_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1864136_1864883_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1864887_1865361_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1865426_1865684_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1865680_1866682_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1866686_1868165_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1868323_1868779_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1869081_1869732_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_076050706.1|1869812_1870808_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	9.9e-75
WP_000669038.1|1870883_1871510_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1871550_1871895_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1871992_1872565_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_001093574.1|1872713_1874081_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|1874080_1874650_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1874842_1875289_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1875739_1875835_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1875957_1876059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037039.1|1876233_1876677_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731421.1|1876676_1877120_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182551.1|1878086_1880507_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001036447.1|1880632_1881010_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1881219_1881669_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001053714.1|1881711_1883322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|1883336_1883636_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_000072622.1|1885749_1886904_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_000028587.1|1886896_1888453_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.2e-286
WP_001038742.1|1888815_1889535_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_053865858.1|1889703_1890420_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	64.7	5.3e-86
WP_001038766.1|1890586_1891303_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1891426_1892146_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1893160_1893676_+	membrane protein	NA	NA	NA	NA	NA
WP_000711497.1|1893922_1895269_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.3	6.7e-66
>prophage 9
NZ_CP019117	Staphylococcus aureus strain SJTUF_J27 chromosome, complete genome	2804759	1930266	2004992	2804759	terminase,transposase,head,tRNA,tail,portal,protease,capsid,holin	Staphylococcus_phage(50.72%)	90	NA	NA
WP_000181394.1|1930266_1930737_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379980.1|1930741_1931869_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1932019_1932742_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649898.1|1932734_1934192_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_053865860.1|1934450_1935512_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1944395_1944842_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869463.1|1944938_1945889_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
WP_000939529.1|1945894_1946350_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011603.1|1946430_1947720_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1948012_1949107_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597238.1|1949297_1951034_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251252.1|1951324_1951867_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284755.1|1952169_1953207_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379102.1|1953358_1954336_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886472.1|1954596_1955433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535849.1|1955441_1956959_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1956973_1957288_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124422.1|1957265_1958084_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1958344_1959154_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163281.1|1959494_1960010_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1960139_1960301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107285502.1|1960627_1960735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076050708.1|1960747_1961689_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	6.7e-182
WP_107285502.1|1961736_1961844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076050710.1|1961931_1963104_-	hypothetical protein	NA	Q9MBN0	Staphylococcus_prophage	99.7	1.3e-214
WP_000273396.1|1963117_1963537_-	hypothetical protein	NA	Q9MBN1	Staphylococcus_prophage	100.0	8.7e-81
WP_000669582.1|1964066_1965035_-	bi-component leukocidin LukMF' subunit F'	NA	Q9MBN2	Staphylococcus_prophage	100.0	2.0e-181
WP_015980423.1|1965036_1965963_-	bi-component leukocidin LukMF' subunit M	NA	Q9MBN3	Staphylococcus_prophage	100.0	1.4e-176
WP_000861033.1|1966310_1967066_-	CHAP domain-containing protein	NA	Q9MBN4	Staphylococcus_prophage	100.0	3.4e-152
WP_000611513.1|1967077_1967332_-|holin	phage holin	holin	Q9MBN5	Staphylococcus_prophage	100.0	5.3e-41
WP_000539688.1|1967870_1968167_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1968224_1968512_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_053865854.1|1968558_1968711_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	2.0e-19
WP_015980422.1|1968700_1972486_-	hypothetical protein	NA	Q9MBN9	Staphylococcus_prophage	100.0	0.0e+00
WP_015980421.1|1972501_1973992_-|tail	phage tail family protein	tail	Q9MBP0	Staphylococcus_prophage	100.0	1.4e-298
WP_076050712.1|1973991_1978641_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	97.7	0.0e+00
WP_000571956.1|1978697_1978820_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442601.1|1978879_1979326_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570651.1|1979390_1980344_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	99.7	1.8e-174
WP_000611451.1|1980344_1980725_-	hypothetical protein	NA	Q9MBP5	Staphylococcus_prophage	100.0	3.4e-68
WP_000501244.1|1980721_1981099_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_053865856.1|1981098_1981398_-|head,tail	head-tail adaptor protein	head,tail	D2JLF1	Staphylococcus_phage	99.0	1.2e-52
WP_015980417.1|1981424_1983071_-|transposase	IS1182-like element ISSau3 family transposase	transposase	Q9MBP7	Staphylococcus_prophage	100.0	7.9e-295
WP_015980416.1|1983335_1983677_-|head,tail	phage head-tail connector protein	head,tail	Q9MBP8	Staphylococcus_prophage	100.0	6.9e-60
WP_001252099.1|1983685_1983844_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849952.1|1983879_1985127_-|capsid	phage major capsid protein	capsid	D2JLE8	Staphylococcus_phage	100.0	1.7e-201
WP_000032525.1|1985214_1985799_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511067.1|1985791_1987042_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
WP_000365300.1|1987047_1987248_-	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	100.0	1.0e-26
WP_053865850.1|1987261_1988956_-|terminase	phage terminase family protein	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000919026.1|1988958_1989426_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|1989555_1989900_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|1989915_1990368_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_053865849.1|1990482_1990944_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.6e-72
WP_000265043.1|1990966_1991167_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_015980412.1|1991166_1991316_-	hypothetical protein	NA	Q9MBQ7	Staphylococcus_prophage	100.0	3.7e-18
WP_001555739.1|1991315_1991702_-	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	100.0	3.0e-64
WP_000483477.1|1991691_1991928_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|1991952_1992189_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000185693.1|1992225_1992762_-	dUTP diphosphatase	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_015980411.1|1992754_1993003_-	DUF1024 family protein	NA	Q9MBR1	Staphylococcus_prophage	100.0	3.1e-38
WP_031918300.1|1992995_1993280_-	phage protein	NA	Q9MBR2	Staphylococcus_prophage	98.9	1.4e-45
WP_015980409.1|1993294_1993543_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	100.0	3.2e-43
WP_015980408.1|1993543_1993915_-	phi PVL ORF 50	NA	Q9MBR4	Staphylococcus_prophage	100.0	2.7e-54
WP_000772917.1|1993926_1994184_-	helix-turn-helix transcriptional regulator	NA	Q9MBR5	Staphylococcus_prophage	100.0	5.4e-41
WP_031916945.1|1994184_1994370_-	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	95.1	7.8e-26
WP_015980406.1|1994374_1994779_-	DUF1064 domain-containing protein	NA	Q9MBR7	Staphylococcus_prophage	100.0	5.4e-72
WP_000237154.1|1995024_1995186_-	hypothetical protein	NA	A0A0H4IU12	Staphylococcus_phage	100.0	1.0e-21
WP_053865848.1|1995179_1995953_-	ATP-binding protein	NA	C5I645	Staphylococcus_phage	99.2	1.5e-142
WP_000504986.1|1995962_1996766_-	phage replisome organizer N-terminal domain-containing protein	NA	Q9MBR9	Staphylococcus_prophage	100.0	1.5e-121
WP_015980404.1|1996737_1997433_-	hypothetical protein	NA	Q9MBS0	Staphylococcus_prophage	100.0	2.3e-134
WP_016187439.1|1997446_1997875_-	single-stranded DNA-binding protein	NA	A0A2H4JHI1	uncultured_Caudovirales_phage	98.6	2.5e-59
WP_001043063.1|1997874_1998513_-	ERF family protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
WP_000002517.1|1998512_1998992_-	siphovirus Gp157 family protein	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
WP_000291093.1|1999006_1999267_-	DUF1108 family protein	NA	Q9MBS4	Staphylococcus_prophage	100.0	1.5e-43
WP_000219664.1|1999360_1999681_-	hypothetical protein	NA	Q9MBS5	Staphylococcus_prophage	100.0	1.6e-55
WP_000048122.1|1999681_1999849_-	DUF1270 domain-containing protein	NA	Q9MBS6	Staphylococcus_prophage	100.0	6.2e-22
WP_000594788.1|1999841_2000063_-	hypothetical protein	NA	Q9MBS7	Staphylococcus_prophage	100.0	1.5e-31
WP_000395456.1|2000134_2000365_+	hypothetical protein	NA	Q9MBS8	Staphylococcus_prophage	100.0	3.0e-35
WP_015980402.1|2000531_2001329_-	phage antirepressor Ant	NA	Q9MBT0	Staphylococcus_prophage	100.0	1.7e-146
WP_000772137.1|2001385_2001595_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|2001587_2001728_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435360.1|2001742_2002186_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000548576.1|2002198_2002438_-	helix-turn-helix transcriptional regulator	NA	Q9MBT3	Staphylococcus_prophage	100.0	8.0e-39
WP_000094091.1|2002609_2003320_+	helix-turn-helix transcriptional regulator	NA	Q9MBT4	Staphylococcus_prophage	100.0	2.6e-130
WP_001049401.1|2003331_2003478_+	hypothetical protein	NA	U5U441	Staphylococcus_phage	100.0	4.3e-19
WP_000100503.1|2003474_2003660_+	hypothetical protein	NA	A0A1X9H0K5	Staphylococcus_phage	100.0	1.1e-24
WP_000449655.1|2003749_2004145_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_074370993.1|2004234_2004381_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000191466.1|2004377_2004992_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
