bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	3.1|836915|26|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.15	26	1	0	1	26	799877	799852	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	799852-799877	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	3.1|836915|26|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.15	26	1	0	1	26	2862244	2862269	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2862244-2862269	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	3.1|836915|26|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.15	26	1	0	1	26	2862300	2862325	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2862300-2862325	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	3.1|836915|26|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	92.31	26	2	0	1	26	799933	799908	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	799908-799933	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	3.1|836915|26|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	92.31	26	2	0	1	26	943024	942999	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	942999-943024	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	4.1|880238|34|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	100.00	34	0	0	1	34	1369231	1369198	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1369198-1369231	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	4.1|880238|34|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	100.00	34	0	0	1	34	1458390	1458423	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1458390-1458423	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5.1|943055|26|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.15	26	1	0	1	26	942999	943024	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	942999-943024	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5.1|943055|26|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	92.31	26	2	0	1	26	799852	799877	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	799852-799877	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5.1|943055|26|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	92.31	26	2	0	1	26	2862269	2862244	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2862244-2862269	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5.1|943055|26|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	92.31	26	2	0	1	26	2862325	2862300	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2862300-2862325	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5.3|943169|26|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.15	26	1	0	1	26	836996	836971	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	836971-836996	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	5.3|943169|26|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	92.31	26	2	0	1	26	394605	394630	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	394605-394630	CGGGGCCCCAACAAAGAAGCTGACGA	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7.1|2061918|33|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.97	33	1	0	1	33	836951	836983	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	836951-836983	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7.1|2061918|33|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.97	33	1	0	1	33	1161060	1161028	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1161028-1161060	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7.1|2061918|33|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.97	33	1	0	1	33	1369185	1369153	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1369153-1369185	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7.1|2061918|33|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.97	33	1	0	1	33	1683669	1683701	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1683669-1683701	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7.1|2061918|33|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	96.97	33	1	0	1	33	2696894	2696926	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2696894-2696926	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	7.1|2061918|33|NZ_CP009423|CRISPRCasFinder	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	1458436	1458468	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1458436-1458468	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.1|2420957|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	836951	836983	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	836951-836983	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.1|2420957|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	1161060	1161028	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1161028-1161060	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.1|2420957|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	1369185	1369153	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1369153-1369185	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.1|2420957|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	1458436	1458468	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1458436-1458468	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.1|2420957|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	2696894	2696926	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2696894-2696926	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.2|2421013|36|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	100.00	36	0	0	1	36	1161007	1160972	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1160972-1161007	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.2|2421013|36|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	97.22	36	1	0	1	36	1862159	1862124	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1862124-1862159	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.2|2421013|36|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	94.44	36	2	0	1	36	1683608	1683643	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1683608-1683643	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.2|2421013|36|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	94.44	36	2	0	1	36	2072721	2072756	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2072721-2072756	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.3|2421072|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	836951	836983	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	836951-836983	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.3|2421072|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	1161060	1161028	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1161028-1161060	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.3|2421072|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	1369185	1369153	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1369153-1369185	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP009423	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	9.3|2421072|33|NZ_CP009423|CRT	NZ_CP009423.1	Staphylococcus aureus subsp. aureus strain USA300_SUR1, complete genome	93.94	33	2	0	1	33	2696894	2696926	433272-433372|672252-672344|836885-836970|880214-880295|943025-943307|1076697-1076784|2061895-2061973|2297016-2297166|2420934-2421127	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2696894-2696926	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
