assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	1	969564-970264	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,11,11	11	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|919aa|up_9|NZ_CP019213.2_956156_958913_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP019213.2_958969_960271_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP019213.2_960318_962553_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP019213.2_962630_962879_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP019213.2_962878_963214_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP019213.2_963284_964076_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP019213.2_964303_965941_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP019213.2_966028_967327_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP019213.2_967386_968259_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP019213.2_968552_969224_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP019213.2_971738_973217_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP019213.2_973243_974521_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP019213.2_974839_975625_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP019213.2_975694_977149_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP019213.2_977242_978580_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP019213.2_978557_979337_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP019213.2_979333_980194_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP019213.2_980341_980917_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP019213.2_980933_981194_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|122aa|down_9|NZ_CP019213.2_982533_982899_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	2	970277-971099	2,2,2	CRT,CRISPRCasFinder,PILER-CR	no	cas3	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,12,10	13	Unclear	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|919aa|up_9|NZ_CP019213.2_956156_958913_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP019213.2_958969_960271_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP019213.2_960318_962553_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP019213.2_962630_962879_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP019213.2_962878_963214_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP019213.2_963284_964076_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP019213.2_964303_965941_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP019213.2_966028_967327_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP019213.2_967386_968259_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP019213.2_968552_969224_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP019213.2_971738_973217_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP019213.2_973243_974521_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP019213.2_974839_975625_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP019213.2_975694_977149_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP019213.2_977242_978580_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP019213.2_978557_979337_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP019213.2_979333_980194_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP019213.2_980341_980917_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP019213.2_980933_981194_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|122aa|down_9|NZ_CP019213.2_982533_982899_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	3	996649-997653	3,3,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,TCGAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,31	0	0	NA	NA	I-E:I-E:I-E:I-E	11,16,16,11	16	TypeI-E	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|571aa|up_9|NZ_CP019213.2_985013_986726_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP019213.2_986799_987534_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP019213.2_987892_990559_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_6|NZ_CP019213.2_990973_992326_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP019213.2_992474_992957_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP019213.2_992969_994061_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP019213.2_994063_994738_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP019213.2_994724_995324_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP019213.2_995339_996257_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP019213.2_996258_996543_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP019213.2_997673_998711_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019213.2_998962_999871_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP019213.2_999872_1001300_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019213.2_1001299_1001905_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP019213.2_1001954_1002278_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019213.2_1002471_1002783_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019213.2_1002801_1003512_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019213.2_1003511_1003991_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019213.2_1003987_1005037_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019213.2_1005017_1005779_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	4	1533773-1533890	4	CRISPRCasFinder	no	cas14j	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	TypeV	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|397aa|up_9|NZ_CP019213.2_1522449_1523640_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|NZ_CP019213.2_1523636_1524896_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|NZ_CP019213.2_1524885_1526514_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|NZ_CP019213.2_1526786_1528145_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|360aa|up_5|NZ_CP019213.2_1528149_1529229_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|293aa|up_4|NZ_CP019213.2_1529273_1530152_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|397aa|up_3|NZ_CP019213.2_1530316_1531507_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP019213.2_1531587_1532238_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP019213.2_1532291_1532546_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP019213.2_1532545_1533676_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP019213.2_1533909_1536195_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP019213.2_1536890_1540649_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP019213.2_1540788_1541511_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP019213.2_1541657_1544285_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP019213.2_1544431_1546120_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP019213.2_1546116_1546740_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|NZ_CP019213.2_1546673_1551278_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP019213.2_1551278_1552928_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP019213.2_1552932_1553709_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_9|NZ_CP019213.2_1553983_1556833_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	5	2208276-2208399	5	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|75aa|down_7|NZ_CP019213.2_2216984_2217209_-,NA|30aa|down_8|NZ_CP019213.2_2217295_2217385_+	NA|70aa|up_9|NZ_CP019213.2_2198385_2198595_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_8|NZ_CP019213.2_2199049_2199676_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_7|NZ_CP019213.2_2199696_2201799_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_6|NZ_CP019213.2_2201802_2202450_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_5|NZ_CP019213.2_2202513_2203182_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_4|NZ_CP019213.2_2203178_2203964_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_3|NZ_CP019213.2_2203967_2204780_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_2|NZ_CP019213.2_2204791_2206396_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_1|NZ_CP019213.2_2206521_2206827_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|405aa|up_0|NZ_CP019213.2_2206953_2208167_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|419aa|down_0|NZ_CP019213.2_2208713_2209970_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP019213.2_2210010_2211384_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP019213.2_2211598_2212240_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP019213.2_2212279_2213428_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP019213.2_2213718_2214930_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP019213.2_2215042_2215975_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP019213.2_2215971_2216997_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP019213.2_2216984_2217209_-	NA	NA|30aa|down_8|NZ_CP019213.2_2217295_2217385_+	NA	NA|390aa|down_9|NZ_CP019213.2_2217550_2218720_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	6	2936705-2936796	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA|64aa|up_9|NZ_CP019213.2_2925745_2925937_+,NA|70aa|up_8|NZ_CP019213.2_2925824_2926034_-,NA	NA|64aa|up_9|NZ_CP019213.2_2925745_2925937_+	NA	NA|70aa|up_8|NZ_CP019213.2_2925824_2926034_-	NA	NA|1321aa|up_7|NZ_CP019213.2_2926088_2930051_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP019213.2_2930090_2930729_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|383aa|up_5|NZ_CP019213.2_2930959_2932108_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP019213.2_2932107_2932800_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP019213.2_2932811_2933198_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_2|NZ_CP019213.2_2933205_2934006_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|165aa|up_1|NZ_CP019213.2_2934573_2935068_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP019213.2_2935088_2936417_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP019213.2_2937220_2937817_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP019213.2_2937837_2938065_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP019213.2_2938102_2939344_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP019213.2_2939636_2940893_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP019213.2_2941930_2942851_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP019213.2_2942850_2943156_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP019213.2_2943307_2943907_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP019213.2_2943903_2946450_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP019213.2_2946449_2947622_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP019213.2_2947751_2948444_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	7	3079305-3079388	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|92aa|down_0|NZ_CP019213.2_3079410_3079686_+	NA|431aa|up_9|NZ_CP019213.2_3064206_3065499_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP019213.2_3065589_3066933_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP019213.2_3066943_3067555_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1343aa|up_6|NZ_CP019213.2_3067709_3071738_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP019213.2_3071872_3072367_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP019213.2_3072911_3073877_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP019213.2_3073999_3075766_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP019213.2_3075766_3077488_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP019213.2_3077529_3078234_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP019213.2_3078518_3078737_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|92aa|down_0|NZ_CP019213.2_3079410_3079686_+	NA	NA|759aa|down_1|NZ_CP019213.2_3079600_3081877_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_2|NZ_CP019213.2_3081907_3082228_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_3|NZ_CP019213.2_3082550_3082775_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_4|NZ_CP019213.2_3082847_3084794_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_5|NZ_CP019213.2_3084790_3085906_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_6|NZ_CP019213.2_3086020_3087013_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_7|NZ_CP019213.2_3087009_3088668_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_8|NZ_CP019213.2_3089093_3089789_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_9|NZ_CP019213.2_3090283_3091183_+	COG2431, COG2431, Predicted membrane protein [Function unknown]
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	8	3210491-3210635	8	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA|60aa|up_1|NZ_CP019213.2_3208904_3209084_+,NA|70aa|down_8|NZ_CP019213.2_3221355_3221565_-	NA|303aa|up_9|NZ_CP019213.2_3199775_3200684_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_8|NZ_CP019213.2_3200875_3202897_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_7|NZ_CP019213.2_3203475_3204153_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_6|NZ_CP019213.2_3204145_3204901_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_5|NZ_CP019213.2_3204887_3206042_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_4|NZ_CP019213.2_3206038_3207079_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_3|NZ_CP019213.2_3207165_3208455_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_2|NZ_CP019213.2_3208513_3208990_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|60aa|up_1|NZ_CP019213.2_3208904_3209084_+	NA	NA|428aa|up_0|NZ_CP019213.2_3209141_3210425_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP019213.2_3210658_3212920_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|351aa|down_1|NZ_CP019213.2_3214611_3215664_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_2|NZ_CP019213.2_3215847_3216801_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP019213.2_3216841_3217837_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP019213.2_3217991_3218810_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP019213.2_3218810_3219869_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP019213.2_3219871_3220561_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP019213.2_3220560_3221334_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_8|NZ_CP019213.2_3221355_3221565_-	NA	NA|50aa|down_9|NZ_CP019213.2_3221500_3221650_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	9	3446931-3447027	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA	NA|347aa|up_9|NZ_CP019213.2_3434289_3435330_-	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH	NA|181aa|up_8|NZ_CP019213.2_3439638_3440181_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP019213.2_3440651_3441518_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP019213.2_3441519_3441732_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP019213.2_3441839_3442361_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP019213.2_3442396_3443782_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP019213.2_3443955_3444450_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP019213.2_3444452_3445175_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP019213.2_3445292_3445802_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP019213.2_3445798_3446866_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP019213.2_3447060_3447954_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP019213.2_3447950_3448766_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP019213.2_3448776_3450036_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP019213.2_3450045_3451713_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP019213.2_3452029_3453079_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP019213.2_3453100_3454336_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP019213.2_3454346_3455132_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP019213.2_3455359_3456505_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP019213.2_3456526_3457828_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP019213.2_3457884_3459246_-	PRK08044, PRK08044, allantoinase AllB
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	10	3587172-3587316	10	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA,NA|66aa|down_5|NZ_CP019213.2_3590993_3591191_-	NA|357aa|up_9|NZ_CP019213.2_3572310_3573381_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP019213.2_3573473_3574055_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|605aa|up_7|NZ_CP019213.2_3574059_3575874_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP019213.2_3576032_3577406_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP019213.2_3577481_3578801_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP019213.2_3579207_3580503_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP019213.2_3580560_3581250_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP019213.2_3581439_3582642_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP019213.2_3582638_3585785_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP019213.2_3585910_3587095_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP019213.2_3587339_3588248_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP019213.2_3588372_3589284_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|94aa|down_2|NZ_CP019213.2_3589441_3589723_-	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|95aa|down_3|NZ_CP019213.2_3589930_3590215_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP019213.2_3590286_3590964_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|66aa|down_5|NZ_CP019213.2_3590993_3591191_-	NA	NA|64aa|down_6|NZ_CP019213.2_3591221_3591413_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_7|NZ_CP019213.2_3591462_3591987_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_8|NZ_CP019213.2_3592163_3592628_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_9|NZ_CP019213.2_3592747_3593557_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed
GCF_001969285.2_ASM196928v3	NZ_CP019213	Escherichia coli strain WCHEC050613 chromosome, complete genome	11	4211403-4211523	11	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	Orphan	AAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCAT	40	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG	NA|72aa|up_7|NZ_CP019213.2_4202071_4202287_-,NA	NA|58aa|up_9|NZ_CP019213.2_4201649_4201823_-	pfam10753, Toxin_GhoT_OrtT, Toxin GhoT_OrtT	NA|99aa|up_8|NZ_CP019213.2_4201850_4202147_-	pfam11080, GhoS, Endoribonuclease GhoS	NA|72aa|up_7|NZ_CP019213.2_4202071_4202287_-	NA	NA|91aa|up_6|NZ_CP019213.2_4202373_4202646_-	COG2388, COG2388, Predicted acetyltransferase [General function prediction only]	NA|77aa|up_5|NZ_CP019213.2_4202657_4202888_-	COG3592, COG3592, Uncharacterized conserved protein [Function unknown]	NA|544aa|up_4|NZ_CP019213.2_4203068_4204700_+	PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional	NA|240aa|up_3|NZ_CP019213.2_4204696_4205416_+	PRK10430, PRK10430, two-component system response regulator DcuR	NA|447aa|up_2|NZ_CP019213.2_4205986_4207327_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|549aa|up_1|NZ_CP019213.2_4207404_4209051_+	PRK15389, PRK15389, fumarate hydratase; Provisional	NA|210aa|up_0|NZ_CP019213.2_4209173_4209803_+	PRK09867, PRK09867, hypothetical protein; Provisional	NA|452aa|down_0|NZ_CP019213.2_4212323_4213679_-	PRK15076, PRK15076, alpha-galactosidase; Provisional	NA|303aa|down_1|NZ_CP019213.2_4213961_4214870_+	PRK10371, PRK10371, transcriptional regulator MelR	NA|756aa|down_2|NZ_CP019213.2_4215068_4217336_+	PRK15029, PRK15029, arginine decarboxylase; Provisional	NA|254aa|down_3|NZ_CP019213.2_4217660_4218422_+	PRK09978, PRK09978, DNA-binding transcriptional regulator GadX; Provisional	NA|446aa|down_4|NZ_CP019213.2_4218558_4219896_+	PRK10644, PRK10644, arginine/agmatine antiporter	NA|548aa|down_5|NZ_CP019213.2_4219999_4221643_+	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional	NA|223aa|down_6|NZ_CP019213.2_4221639_4222308_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|364aa|down_7|NZ_CP019213.2_4222317_4223409_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|30aa|down_8|NZ_CP019213.2_4223384_4223474_-	NF033224, PmrR, LpxT activity modulator PmrR	NA|501aa|down_9|NZ_CP019213.2_4223585_4225088_-	PRK10642, PRK10642, proline/glycine betaine transporter ProP
